SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO09796  Validated by peptides from experiments
Pre Gene Modal
BGIBMGA013112
Annotation
PREDICTED:_myb-binding_protein_1A-like_protein_[Amyelois_transitella]
Location
Bomo_Chr16(+):9489055-9499394      View in EpiBrowser
Location in the cell
Nuclear   Reliability : 2.943
 

Sequence

CDS
ATGAAAGACGAAAGTGAAGAGAACAAGCCTCAAACGCAGGCCAAAGTAACTTCTTTTGTGCTAGAATCGTTTGATTTACTTAAAGCTGCGAAAGACGATGCTAGATTAACAGGAGGTACCAAAATTATAACACAGTTGCAAGACAATGAGAATGAAAAAGACGTACAATATGTATTGAAAAGGCTAGTTCGAAGCTTAGGCGCGAATGTACCGGATATGAGGACGGGATATTTCGCCACCCTGGTCGCATTGCTAACAAAATTCGATCAGATCACCGTAACAAAGCTCCTGGAACTAGTGAAAAAAGAATTGCATGCTAATGGCTCTTCAAAAAGTGAAGTAGGAGATGTCGCTCTGGGACAGATATTAGTGTGTGGAGCTGTTTTCCGATCTGGATTAATAATGAAATGCACGACTGAAGAACAAACTGAAATTATTAAGCTCTTAATGAGTGCAAGCAAAAAAAAAACATATTTAAGCACTGTTGCTTATCTTATTTTCCTGGATTTCATCAATGGATTAGATGTTGAAAATTTCACTTCAATTGTTTGGTCAAACATAAAACAAGATTTCAAGAAAGAATTATCCGAACATACTCTCGACTCTCTATACTTTCTTATGGTTGCAAACAAAAAGTTTCCAGATGTAGTAAAACTCCGGAAATTAATTGGCACTTCTGAAATACTGTGTGAAGATAATATCCAACCAGTATGTGAGAAACTAATGACCGGTGTTGATTTTTCTTCACTGAACCATCCTATCTACAAAGAGATAGGAGCACAAATAGCAAACTCACCACATTTGCAACTTTTCTGGTTATCGGGTATTGACAGTCAACTCACAAAACACAATCGTAACAGAGAACTGGTCGCTGTTAACATACTAACTACGATATTCAACAACATTGAAAACAATCATGAGGTCTTGCCGGAATTGATAAGTCGCAATTTTTTCAAACTTTTTATTGATTGGTTCAAAGGCTTGCAGACAGCTAGTAAAATAAGAAATAAAAAGGACAATGAGGATGACAATAAAATTATGATTAAGAAACAAAAAGAACTTCTGAATTCACTCTCAAAGGCATTGAAGTCTGAGAAAGTTGAGGGAAAAACAAGAGTTGAAATATTAAAGAAACTACTTTTCAATCCTGGAGAGATGAATTTCATTGAGATAACAGGCACCTCTGTGGTTAAAATCATTATCTCTGATTTAGACAAGGATGGTGTTAAGAAAATGGCCAAGCTATTCAAAGGAGTATTATTGAATTCTTCGAAGAAATTCATCAGGGAAGGTACAGAGAGAATCTGGTATAATAATGAAAGGGTGAAAGCAGCTGAAATGCTATCTTATTTAGTAAGTCACGAGGTAGTTAAAGACGACGTAGATTTTAAATTAACATACATGAAACTCCTCATGTGTTTTGGCTTCTTCAAAATTGGTGGTGATGAAAATGTTGCTATCAGTATAGATTTATCAGTGGCAATAAAATCCTGTTTCTATCGTTGCTTCACATCCCGATTCTCAAACGTCGATAACTTAGTCTCTGTATTATCATCACTTTGTGACTTCATCCGAAATTTACTTGAAAAAGAACAAATACGCTCCAAACTCGAAAAACAGTTCCCCGAAGAAAATATGGAATGCTGGAAAATGCTAATGGAGGTCTGCTCGAATATAGAAAAGAATAACTCAAAGTCCAAAGTAGAGAATGTATTTCTTATATTACTCTATCAGCTTGGTTTGTTTCTATTTTCTGAACCCACACATGTAAAAATTGCAACAAGTTCTATAAAGGAGTTAAGGAGTTGTTATGAACACTACAAAAAAGGTAAAAAGAAAAAGAAAGTTATGAAGGATACTGACATTAATGGGAATCTAGAGTGGATTGAAGTCTTAGTGGAAGTTTTGCTATCGATACTGTCAGCTGAGTCAAGTGTACTGAGATCAGTAGTACAGTGCGTATTTAGGCTTTTATGGGAGTATTTAACACCATCAGCTATCGAACAGATTGTATCCGTGTTAGACCCCGAAAGTGAATCTAATCCATTGACTCAGGATAGCGAATCTGAAGCCGAAGAATCAGATGGAGAGGAGAACGTTGAAGAAAACAGTGACGATGAAAGTGATAGTGAAGTAGACGATGAAAATGATGAGGAGGAAATGAAAACGCCAGATCAATTACGGATGGCAGTTCAAAAAGCATTAGGAGCAGCCGCCACAAGCTCTGATACGGAAAGCGTGGACGCAGATATGCTCGATGAAGAAGAAGGCAAGAAATTAGACGAAGCTCTCGCGGAAGCATTCAAACAATACCAGCAAGGTAAAACAAAGAAAACAAAAAAGGACCGTAAAGATAAAAAAGCGCTTTCAGACTTTCGAATACGCGTCTTAGACTTGATAGATATATATTTGGAGAAGGACCCATCTATGGATATTTGTCTAGCGATGATCGCGCCGTTGACAAGATGCCTCGAATTTTGCTTACAGGACAACCAGTTGAGTGAGCTCGAAAACCGCGTAAGGAAAACTATTAAAAATCTGACGAAAATAAGGAAGTTTTCTTCGACAAATGATGTTACTGCAGAAATACTCAGCGACTATCTGAGATCGAACCGCAGTTGCTTGTTACCAATCATTCTGTTTCACAACGTTCTACAAATGGAATGGGAAGGAATTTATGAGTTAGCCCCGATCGTAATCGAGAATGTGTTCAATCCCGAAGTTAGACAGTTCCGGCGCAACGAGGGATTGGAACTTTTGGCGGGCCTGTATCGAGCCTTGAAGAGAAACAAACCCGAAACGGATAAAGCGCTCGCTTGCCTAGATAATTTGGAAAATAAATTTGATATTACATTAAGAAAAACACTGAAGGGGCAACAGCAATTGGCTGTCAAAAACAATTTCTTCCTATTACTAAAAAAATTGATAAACAGCATGAAAATTTTCCACGAGAGCTGCCATGTTAAATAGCCACAGTCTTCGCTTTTATTAAAAAAGCAATTAGCTGAACTGAACAAAAACCCAGTAGAAGGCTTTTCTGCTGGCTTAATAGATGACAATGATATATACAAATGGGAAGTCCTCATTATTGGTCCCCCAGACACACTATACGAGGGAGGTTTCTTTAAAGCACATTTAAATTTTCCCAAGGAATATCCTTTGAGACCACCCCGGATGAAATTTGTGACTGAAATATGGCATCCAAATATTGATAAAAATGGTGATGTCTGCATATCAATACTTCACGAGCCAGGTGATGACAAATGGGGTTATGAAAAAGCTTCAGAACGATGGTTACCTGTGCACACAGTTGAGACTATACTGATCAGTGTCATTTCAATGCTCGCTGATCCAAATGATGAGAGTCCCGCTAATGTTGATGCTGCAAAAGAATGGAGAGAACGATATTCGGAATTCAAAAAGAAAGTTGCCAGATGTGTTAGGAAAAGTCAAGAAGATTGCTTCTAG
Protein
MKDESEENKPQTQAKVTSFVLESFDLLKAAKDDARLTGGTKIITQLQDNENEKDVQYVLKRLVRSLGANVPDMRTGYFATLVALLTKFDQITVTKLLELVKKELHANGSSKSEVGDVALGQILVCGAVFRSGLIMKCTTEEQTEIIKLLMSASKKKTYLSTVAYLIFLDFINGLDVENFTSIVWSNIKQDFKKELSEHTLDSLYFLMVANKKFPDVVKLRKLIGTSEILCEDNIQPVCEKLMTGVDFSSLNHPIYKEIGAQIANSPHLQLFWLSGIDSQLTKHNRNRELVAVNILTTIFNNIENNHEVLPELISRNFFKLFIDWFKGLQTASKIRNKKDNEDDNKIMIKKQKELLNSLSKALKSEKVEGKTRVEILKKLLFNPGEMNFIEITGTSVVKIIISDLDKDGVKKMAKLFKGVLLNSSKKFIREGTERIWYNNERVKAAEMLSYLVSHEVVKDDVDFKLTYMKLLMCFGFFKIGGDENVAISIDLSVAIKSCFYRCFTSRFSNVDNLVSVLSSLCDFIRNLLEKEQIRSKLEKQFPEENMECWKMLMEVCSNIEKNNSKSKVENVFLILLYQLGLFLFSEPTHVKIATSSIKELRSCYEHYKKGKKKKKVMKDTDINGNLEWIEVLVEVLLSILSAESSVLRSVVQCVFRLLWEYLTPSAIEQIVSVLDPESESNPLTQDSESEAEESDGEENVEENSDDESDSEVDDENDEEEMKTPDQLRMAVQKALGAAATSSDTESVDADMLDEEEGKKLDEALAEAFKQYQQGKTKKTKKDRKDKKALSDFRIRVLDLIDIYLEKDPSMDICLAMIAPLTRCLEFCLQDNQLSELENRVRKTIKNLTKIRKFSSTNDVTAEILSDYLRSNRSCLLPIILFHNVLQMEWEGIYELAPIVIENVFNPEVRQFRRNEGLELLAGLYRALKRNKPETDKALACLDNLENKFDITLRKTLKGQQQLAVKNNFFLLLKKLINSMKIFHESCHVKXPQSSLLLKKQLAELNKNPVEGFSAGLIDDNDIYKWEVLIIGPPDTLYEGGFFKAHLNFPKEYPLRPPRMKFVTEIWHPNIDKNGDVCISILHEPGDDKWGYEKASERWLPVHTVETILISVISMLADPNDESPANVDAAKEWRERYSEFKKKVARCVRKSQEDCF

Summary

Similarity
Belongs to the ubiquitin-conjugating enzyme family.
Uniprot
H9JUA0   A0A1E1WFH1   A0A194QIM9   A0A2H1VE70   A0A194RJ57   A0A3S2M3S2   + More
A0A212FMQ7   A0A0L7L926  
Pubmed
19121390    26354079    22118469    26227816   
EMBL
BABH01038605    BABH01038606    BABH01038607    GDQN01005320    JAT85734.1    KQ458756    + More
KPJ05254.1    ODYU01002091    SOQ39160.1    KQ460323    KPJ15976.1    RSAL01000051    RVE50248.1    AGBW02007651    OWR55017.1    JTDY01002148    KOB71997.1   
Proteomes
UP000005204    UP000053268    UP000053240    UP000283053    UP000007151    UP000037510    + More
PRIDE
H9JUA0   
Pfam
PF04931   DNA_pol_phi        + More
PF00179   UQ_con
Interpro
IPR023313   UBQ-conjugating_AS        + More
IPR007015   DNA_pol_V/MYBBP1A       
IPR016135   UBQ-conjugating_enzyme/RWD       
IPR000608   UBQ-conjugat_E2       
IPR016024   ARM-type_fold       
SUPFAM
SSF54495   SSF54495        + More
SSF48371   SSF48371       
Gene 3D
3.10.110.10    
CDD
cd00195  UBCc
ProteinModelPortal
H9JUA0   A0A1E1WFH1   A0A194QIM9   A0A2H1VE70   A0A194RJ57   A0A3S2M3S2   + More
A0A212FMQ7   A0A0L7L926  
PDB
2AWF     E-value=2.82175e-77,     Score=739

Ontologies

KEGG
101746052    K02331 DNA polymerase phi [EC:2.7.7.7] | (RefSeq) DNA polymerase V
GO
GO:0016740   GO:0005524   GO:0008134   GO:0005730   GO:0003677   GO:0006355   GO:0003887   GO:0006351   GO:0030131   GO:0005488   GO:0008565   GO:0015031   GO:0009258   GO:0016155   GO:0003824  
PANTHER
PTHR13213  

Topology

Length:
1155
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.483930000000001
Exp number, first 60 AAs:
0
Total prob of N-in:
0.01967
outside
1  -  1155
 
 

Population Genetic Test Statistics

Pi
150.327411
Theta
190.831625
Tajima's D
-0.697286
CLR
292.506102
CSRT
0.1980400979951
Interpretation
Possibly Positive selection
Peptides ×
Source Sequence Identity Evalue
25044914 FVTDTITIAIIR 100.00 0.010
28556443 TYDFISSSLETPEPHQEK 100.00 0.010
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