Gene

KWMTBOMO09794

Pre Gene Modal

BGIBMGA009948

Annotation

PREDICTED:_4-coumarate--CoA_ligase_1-like_[Bombyx_mori]

Location

Bomo_Chr16(+):9422935-9439390      View in EpiBrowser

Location in the cell

Cytoplasmic   Reliability : 3.393

CDS

ATGTCTTTCAACATTGACGACCCTCAATACCACATGGGACATCTATTTATGGACTGCATGAGAAGACGACCTGATTCAGTGTGCCAGATAGACGCAGCAACAGGGGAGACAGAGACAAACGCGTCAGTACTACAGCGGTCTGTGCGGTTAGCCAAGTACATGCGGACGCTCGGTCTTAAGCCGGGGGATGTACTGGCACTGGCGGGAAGAAACCACTTGGATCTTTATATACCATATTATGCTGCCTTAATGAATGGATATCCTATAACCGGCGTCGATCCACTATTCAAATTACATGAAATCAAAAGCTTTTTTAAATTGACGCAACCAAAAATAGCGTTTTGTCAACAAAATCAACGGGAAAATTACTTGGAAGCTGCCCGCGAACTAGGGCTTGACACCAGAGTCATCACATTTGACGGAGACGAGCCGATGTCCAAGTTACTAGCTGACTTCGCTGATGACGATATTGCTGATTTTCAGCCGGCCACTTTCGATTTAGACAAGGTTTACGTCTGGCTGATTAGCACTGGTGGCACATCAGGAGTTCTGAAAGTAGCTGCCATCAAACACAAAGTTTGGATTAGAAAAGCGAATTGTTTAACTTTGTGTCTGTTTGAATTAAAGGATAAAGATGATACGAGTCAAGTAATAGCTCTGAATCTGTCCCCAGTACAATGGGTGTCGGGACTTTTTAACGCAATGGGCATACCGCTTCTCAACCAAACAAAGGTACAGACGTCAGCGCTACTTACAATGGAACATGTCGTTGAGATCATAAACAAGTACAAGCCAAAAACCACAATGATGAACCCGTCGCTAGCTTCTAATTTGTTGGCCTATGAAAACTGTGACTTCAAATGCTTCAAAAGCCTAGTTTTAGGAGGCGGGAAATTACATAAGGATGTTATTTTGGCCCTAAAGAGTAGATTACGACATGACGCGTTACTGATCGAAGCGTACGGGCAGACAGAGAACATAGGACCGGTATTCGCAACGAACCATAAAACACCGATCAGTAGTTGCGGCAAAAGAGCGGACTCTGTTGAAGTTAAGTTAGTTGATCCTGAGAGCGGTCTAGAAATAACTGAACCGCATGTCCCGGGAGAATTGTGGACTAAAGGAGATTGTTTTACAGAGTACTACCTGAATCCAGAAGAAACTGCTAAGGCCTTCACAGCGGATGGCTGGTTTAAAACCGGGGATATTTTGTACAGAGACGAAGAGGACTTTTTCTATTTCGTCGAAAGAATGAGCATGCTCATCAAATATAGGAGCTACCATGTTATACCTGTCGAAATCGAAGGCGTGATCAGAACACACGAAGGAGTCTTGGATGTTAGTGTTACCAGTATACCTAGTGAAGAAGACGGCGAGCATCCCGTAGCGTGTGTGGTGAGACGGAAGGATGCCACCGTCACAGCAGAGGAGATAAAAGATCTTGTTGCCGATAAATTGTCGGATTCAAAAAGATTAAGAGGCGGAGTTATATTCATGGACGAATTACCGATGACATCCGTGGGAAAGGTGGCCCGCGCGAAATTACGACAATTGGCGCAAAACCTACCACGGGAATGA

Protein

MSFNIDDPQYHMGHLFMDCMRRRPDSVCQIDAATGETETNASVLQRSVRLAKYMRTLGLKPGDVLALAGRNHLDLYIPYYAALMNGYPITGVDPLFKLHEIKSFFKLTQPKIAFCQQNQRENYLEAARELGLDTRVITFDGDEPMSKLLADFADDDIADFQPATFDLDKVYVWLISTGGTSGVLKVAAIKHKVWIRKANCLTLCLFELKDKDDTSQVIALNLSPVQWVSGLFNAMGIPLLNQTKVQTSALLTMEHVVEIINKYKPKTTMMNPSLASNLLAYENCDFKCFKSLVLGGGKLHKDVILALKSRLRHDALLIEAYGQTENIGPVFATNHKTPISSCGKRADSVEVKLVDPESGLEITEPHVPGELWTKGDCFTEYYLNPEETAKAFTADGWFKTGDILYRDEEDFFYFVERMSMLIKYRSYHVIPVEIEGVIRTHEGVLDVSVTSIPSEEDGEHPVACVVRRKDATVTAEEIKDLVADKLSDSKRLRGGVIFMDELPMTSVGKVARAKLRQLAQNLPRE

Uniprot

A0A2H1VGY5   A0A2H1VH10   A0A2A4JUE1   A0A2H1WMC6   A0A2A4JW63   A0A212FBQ7   + More
A0A1B3TNX7   A0A1B3TP16   A0A1B3TP03   A0A1B3TNX0   A0A3S2NR21   A0A1B3TNY1   A0A1B3TNZ1   A0A1B3TP17   A0A194R1S6   A0A194Q101   A0A1B3TNX1   A0A1B3TNX8   A0A2W1BJT9   A0A2H1VAR1   A0A2A4JFU1   A0A2A4JE16   A0A2H1V5T4   A0A2W1BGF2   A0A2H1VV91   A0A2A4J4G8   A0A1B3TP04   A0A1B3TNX4   A0A2A4J5M1   A0A2W1BLY3   A0A1B3TNY4   A0A2H1VFT6   A0A3S2N8I8   A0A1B3TNZ3   A0A1B3TP14   A0A2H1V5V8   A0A2W1BJK0   A0A212FBS4   A0A194Q0P0   A0A194R232   A0A194R1K6   A0A194Q640   A0A194PZW6   A0A2A4JCF3   A0A194PZY0   A0A1B3TNZ0   A0A1B3TP07   A0A1B3TP05   A0A1B3TNZ4   A0A1B3TP22   A0A194Q1K5   A0A1B3TNX2   A0A2A4JKH2   A0A3S2PGQ8   A0A2A4JDK9   A0A1B3TNX9   A0A1B3TP12   A0A212FN15   A0A2H1W204   A0A1B3TNZ2   A0A1B3TP24   A0A1B3TP11   A0A2H1VKR7   A0A1B3TNY0   A0A1B3TNW9   A0A2H1V0G3   A0A1B3TP10   A0A1B3TNX3   A0A1B3TP01   A0A1B3TNZ5   A0A1B3TP25   A0A2H1V297   A0A194R6T5   A0A1B3TNZ6   A0A0N0BEN0   A0A0C9S0A1   A0A2A3E406   A0A0C9RSL7   A0A2J7QLX8   A0A0C9Q8B8   A0A088A4S5   A0A310S5G2   A0A154PJT2   E2BM40   A0A0L7R9D1   B0XJH9   A0A158NQ87   A0A026WKQ4   A0A158NQ89   A0A3L8DBM4   A0A1B3TP09   E9IN72   D6WA83  

Pubmed

22118469    27553646    26354079    28756777    20798317    21347285    + More
24508170    30249741    21282665    18362917    19820115   

EMBL

ODYU01002515    SOQ40110.1    SOQ40108.1    NWSH01000564    PCG75621.1    ODYU01009613    + More
SOQ54167.1    PCG75622.1    AGBW02009293    OWR51172.1    KU925727    AOG75352.1    KU925770    AOG75395.1    KU925755    AOG75380.1    KU925717    AOG75342.1    RSAL01000342    RVE42388.1    KU925740    AOG75365.1    KU925741    AOG75366.1    KU925771    AOG75396.1    KQ460878    KPJ11647.1    KQ459582    KPI99003.1    KU925718    AOG75343.1    KU925728    AOG75353.1    KZ150128    PZC73096.1    ODYU01001291    SOQ37304.1    NWSH01001632    PCG70636.1    NWSH01001926    PCG69652.1    ODYU01000839    SOQ36210.1    KZ150081    PZC73878.1    ODYU01004651    SOQ44755.1    NWSH01003054    PCG67037.1    KU925757    AOG75382.1    KU925719    AOG75344.1    PCG67036.1    PZC73876.1    KU925729    AOG75354.1    ODYU01002332    SOQ39697.1    RSAL01000205    RVE44356.1    KU925742    AOG75367.1    KU925772    AOG75397.1    ODYU01000840    SOQ36211.1    PZC73875.1    OWR51173.1    KPI98873.1    KPJ11574.1    KPJ11572.1    KPI98875.1    KPI98872.1    NWSH01001893    PCG69777.1    KPI98876.1    KU925745    AOG75370.1    KU925761    AOG75386.1    KU925756    AOG75381.1    KU925743    AOG75368.1    KU925773    AOG75398.1    KPI98874.1    KU925720    AOG75345.1    NWSH01001271    PCG71900.1    RSAL01000040    RVE50945.1    PCG69778.1    KU925730    AOG75355.1    KU925758    AOG75383.1    AGBW02007648    OWR55128.1    ODYU01005841    SOQ47125.1    KU925733    AOG75358.1    KU925775    AOG75400.1    KU925759    AOG75384.1    ODYU01003084    SOQ41396.1    KU925732    AOG75357.1    KU925721    AOG75346.1    ODYU01000111    SOQ34327.1    KU925762    AOG75387.1    KU925722    AOG75347.1    KU925744    AOG75369.1    KU925746    AOG75371.1    KU925774    AOG75399.1    ODYU01000351    SOQ34963.1    KPJ11571.1    KU925747    AOG75372.1    KQ435828    KOX71864.1    GBYB01013941    JAG83708.1    KZ288417    PBC26022.1    GBYB01010471    JAG80238.1    NEVH01013241    PNF29548.1    GBYB01010473    JAG80240.1    KQ769940    OAD52754.1    KQ434938    KZC12085.1    GL449129    EFN83246.1    KQ414627    KOC67444.1    DS233521    EDS30382.1    ADTU01022957    KK107167    EZA56246.1    ADTU01022960    QOIP01000010    RLU17736.1    KU925760    AOG75385.1    GL764290    EFZ17963.1    KQ971312    EEZ98040.2   

Proteomes

UP000218220    UP000007151    UP000283053    UP000053240    UP000053268    UP000053105    + More
UP000242457    UP000235965    UP000005203    UP000076502    UP000008237    UP000053825    UP000002320    UP000005205    UP000053097    UP000279307    UP000007266   

Pfam

PF00501   AMP-binding        + More
PF13193   AMP-binding_C

Interpro

IPR025110   AMP-bd_C        + More
IPR042099   AMP-dep_Synthh-like_sf       
IPR000873   AMP-dep_Synth/Lig       
IPR020845   AMP-binding_CS       

Gene 3D

3.40.50.12780    

ProteinModelPortal

A0A2H1VGY5   A0A2H1VH10   A0A2A4JUE1   A0A2H1WMC6   A0A2A4JW63   A0A212FBQ7   + More
A0A1B3TNX7   A0A1B3TP16   A0A1B3TP03   A0A1B3TNX0   A0A3S2NR21   A0A1B3TNY1   A0A1B3TNZ1   A0A1B3TP17   A0A194R1S6   A0A194Q101   A0A1B3TNX1   A0A1B3TNX8   A0A2W1BJT9   A0A2H1VAR1   A0A2A4JFU1   A0A2A4JE16   A0A2H1V5T4   A0A2W1BGF2   A0A2H1VV91   A0A2A4J4G8   A0A1B3TP04   A0A1B3TNX4   A0A2A4J5M1   A0A2W1BLY3   A0A1B3TNY4   A0A2H1VFT6   A0A3S2N8I8   A0A1B3TNZ3   A0A1B3TP14   A0A2H1V5V8   A0A2W1BJK0   A0A212FBS4   A0A194Q0P0   A0A194R232   A0A194R1K6   A0A194Q640   A0A194PZW6   A0A2A4JCF3   A0A194PZY0   A0A1B3TNZ0   A0A1B3TP07   A0A1B3TP05   A0A1B3TNZ4   A0A1B3TP22   A0A194Q1K5   A0A1B3TNX2   A0A2A4JKH2   A0A3S2PGQ8   A0A2A4JDK9   A0A1B3TNX9   A0A1B3TP12   A0A212FN15   A0A2H1W204   A0A1B3TNZ2   A0A1B3TP24   A0A1B3TP11   A0A2H1VKR7   A0A1B3TNY0   A0A1B3TNW9   A0A2H1V0G3   A0A1B3TP10   A0A1B3TNX3   A0A1B3TP01   A0A1B3TNZ5   A0A1B3TP25   A0A2H1V297   A0A194R6T5   A0A1B3TNZ6   A0A0N0BEN0   A0A0C9S0A1   A0A2A3E406   A0A0C9RSL7   A0A2J7QLX8   A0A0C9Q8B8   A0A088A4S5   A0A310S5G2   A0A154PJT2   E2BM40   A0A0L7R9D1   B0XJH9   A0A158NQ87   A0A026WKQ4   A0A158NQ89   A0A3L8DBM4   A0A1B3TP09   E9IN72   D6WA83  

PDB

6AAA     E-value=3.38405e-49,     Score=493

KEGG

101741600    no KO assigned | (RefSeq) 4-coumarate--CoA ligase 1-like

GO

GO:0003824   GO:0004497   GO:0016874   GO:0008152   GO:0020037   GO:0030131   GO:0005488   GO:0008565   GO:0015031   GO:0009258   GO:0016155  

Length:

525

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.613679999999999

Exp number, first 60 AAs:

0.00017

Total prob of N-in:

0.01399

outside

1  -  525

 

 

Pi

255.335153

Theta

156.51159

Tajima's D

2.06968

CLR

0.941725

CSRT

0.890855457227139

Interpretation

Uncertain