Gene

KWMTBOMO09793

Pre Gene Modal

BGIBMGA013110

Annotation

PREDICTED:_SHC_SH2_domain-binding_protein_1_isoform_X2_[Amyelois_transitella]

Location

Bomo_Chr16(+):9403605-9416245      View in EpiBrowser

Location in the cell

Cytoplasmic   Reliability : 1.761 Nuclear   Reliability : 1.083

CDS

ATGCCTTCCGTCTATACATTTTCCCGGAGTGATAACGAGATACTTCAAGAGTTGCTGAAGGTATTTAACACGGCAAGGGGCACAGCACGAGAACAGTGGTCCATACAGGCCGAGCTGTTAGTGGAACCAGTTGGATGGGATGCGCTTTGGAAATTATCAAAAGAATTTTGTAAGAAATTCGAAGTTCGCTACCCTTGCATAGCATATGTCACAGTCACTTCAGTGGACTTTGAGAACTTGTCGTCATCTGTCGATGTACTAAGCGTGCAGCATGAAGCAGTCACTCTCCCGGAGTCAGTTGTCGATGTTCCACTAGTGGAATTGTGGCCAACCACAAAACAACGTGAACAATGTGTGAATGCTGCAACCACTGCAGAGTTCATTGATCTACTCAGATTTTATTACAACGACATTTGGATGCCATGGGATGATCAGGATGATAAGATCCTATTACCGAACACGGTAGAAGACCGTATGCAGCTCTGGTCTGACATGCACAATGGGACCATACAACACTGTGTAGCACGATCTATAACATTACTGAGAAGTAGTGCAATAGATGCACACAATAAACTAAATGTTTTAGATTCTTCACTGTGTGAAGAGGATGTGGAAAATGATGATGATTCACTTCTACCCCCGAACTACATATCACAATGTGCAGAGTTAAATGCTCGTTTAGACGGGCTTATGTCGCAGTGGACACTGTATGAAAACCCTCTGATCAGAGAACAGTATTTGGCCAAAATGAAACACAAATGGCAAAAAAAGAAAAGTAAGAAAAATGTGGTAGCTCTCTGGCAAGGAGGTTCAATATTTGAATTCGACGAGATCTCTAAATTCCTTCGTTCTCGTCTCACCAATGAATGCACCTTGACCGTAATGGTCTCGGCAGAAGACGGCCTCACTCTCGAACCGGAGGAAGTCGTGGTGTGCAGCAAACATTACGAAATACCAGAAATGCCTCTTCTTCAAATATCTATATGCAGTTATAAAGGCGCGACCCTAAGGGCGACCGACATGCGTTCGTGGCTGCTGATGCTAAGTGAGGACTGTCGTCTGCGCGACCTGACCCTGCACTGCGCCCTAGTCAACACCGTGCTGCTGATGCGAGCCGGGACGTTGCATATAACCAATTGCGCCTTCCTGGATGATTCAAAAAATGCACAGAGTGATTTTGCGCAAGGCATAGTTGCCATGTCGGGTGCTAAGATCCTGATCGAAGACTGTACATTTGATAATTTCTATTCCGGCATAGTCGTACATAATGGGGCTCAGGTGGAGCTTCGTAACTGCATCATCAAACGTTGCGGCGTCGGGATCCAGATGTATTGGGGCGCGCGCGTCGAGCTGAGCGCCACCACGATCATGGACTGCGCCGAGAACAGCATACGTTGCGAGGTGGAAGCCGGCGCTTGTTCGAAATACACTGATGTGAAAGGTCTACAAATTAAGACGAATTGCAGAATCGGTAGCGGAAACCTTTCGAAGGAGGTACTTGTCGTCGGACAAGAAGCGACGATCATTTGA

Protein

MPSVYTFSRSDNEILQELLKVFNTARGTAREQWSIQAELLVEPVGWDALWKLSKEFCKKFEVRYPCIAYVTVTSVDFENLSSSVDVLSVQHEAVTLPESVVDVPLVELWPTTKQREQCVNAATTAEFIDLLRFYYNDIWMPWDDQDDKILLPNTVEDRMQLWSDMHNGTIQHCVARSITLLRSSAIDAHNKLNVLDSSLCEEDVENDDDSLLPPNYISQCAELNARLDGLMSQWTLYENPLIREQYLAKMKHKWQKKKSKKNVVALWQGGSIFEFDEISKFLRSRLTNECTLTVMVSAEDGLTLEPEEVVVCSKHYEIPEMPLLQISICSYKGATLRATDMRSWLLMLSEDCRLRDLTLHCALVNTVLLMRAGTLHITNCAFLDDSKNAQSDFAQGIVAMSGAKILIEDCTFDNFYSGIVVHNGAQVELRNCIIKRCGVGIQMYWGARVELSATTIMDCAENSIRCEVEAGACSKYTDVKGLQIKTNCRIGSGNLSKEVLVVGQEATII

Uniprot

A0A2A4JW47   A0A3S2NAD1   A0A212FBQ1   A0A2W1B8K1   A0A194Q1D7   S4PAE8   + More
A0A0N0PAP9   A0A2H1VH86   A0A2J7QBL5   K7IM45   A0A232FG39   A0A1J1HS36   A0A088A1B9   A0A067QNE5   A0A0L7R5P8   A0A0M9A026   A0A0C9QWR0   A0A310SJF3   A0A2A3EM40   A0A1A9WEX0   A0A151I693   A0A154P6V9   A0A195FWM9   A0A195E3S2   A0A026WVV6   A0A151XA95   A0A158NNB7   F4WLG8   D6WKG0   A0A195AUI8   N6U0L2   A0A0J7P2B6   U4TY03   A0A2J7QBL1   A0A182JM71   A0A182HFI6   E9IUG5   A0A0K8W6D6   A0A182MRN2   A0A182P4V8   A0A1Y1M6F4   A0A084VND7   A0A0T6AVE5   A0A182F615   Q17JG4   A0A182W7A4   A0A182Q578   A0A182GSK8   E1ZZV0   A0A182RC82   A0A1W4WNU1   A0A182WU99   A0A182L1Q6   A0A182HUW7   B0W7M5   A0A2P8Z2J0   A0A182USE2   A0A1S4HDJ6   A0A182TIB1   A0A1B6FCS6   A0A1Q3EXJ2   A0A1B6KS84   E2C3T7   A0A1B6DZD4   A0A0A1XA85   A0A1Y1M2V5   A0A182Y021   A0A336LQZ3  

Pubmed

22118469    28756777    26354079    23622113    20075255    28648823    + More
24845553    24508170    21347285    21719571    18362917    19820115    23537049    26483478    21282665    28004739    24438588    17510324    20798317    20966253    29403074    12364791    25830018    25244985   

EMBL

NWSH01000564    PCG75620.1    RSAL01000342    RVE42387.1    AGBW02009293    OWR51171.1    + More
KZ150230    PZC72012.1    KQ459582    KPI98804.1    GAIX01005056    JAA87504.1    KQ461183    KPJ07546.1    ODYU01002515    SOQ40111.1    NEVH01016296    PNF25972.1    NNAY01000259    OXU29662.1    CVRI01000020    CRK90829.1    KK853129    KDR10984.1    KQ414652    KOC66139.1    KQ435803    KOX73133.1    GBYB01008169    GBYB01011596    JAG77936.1    JAG81363.1    KQ764881    OAD54316.1    KZ288215    PBC32767.1    KQ978495    KYM93637.1    KQ434819    KZC06928.1    KQ981208    KYN44722.1    KQ979685    KYN19825.1    KK107109    EZA59229.1    KQ982351    KYQ57295.1    ADTU01021203    GL888208    EGI64904.1    KQ971342    EFA03585.1    KQ976738    KYM75846.1    APGK01054197    KB741247    ENN72067.1    LBMM01000319    KMR01387.1    KB631740    ERL85697.1    PNF25973.1    JXUM01134344    KQ568107    KXJ69138.1    GL765974    EFZ15786.1    GDHF01005677    JAI46637.1    AXCM01001558    GEZM01039091    JAV81419.1    ATLV01014737    KE524984    KFB39481.1    LJIG01022701    KRT79168.1    CH477232    EAT46876.1    AXCN02000801    JXUM01017001    KQ560472    KXJ82232.1    GL435529    EFN73290.1    APCN01002480    DS231854    EDS38060.1    PYGN01000224    PSN50703.1    AAAB01008964    GECZ01021750    JAS48019.1    GFDL01015127    JAV19918.1    GEBQ01025689    JAT14288.1    GL452364    EFN77323.1    GEDC01006301    JAS30997.1    GBXI01006647    JAD07645.1    GEZM01042507    JAV79811.1    UFQS01000114    UFQT01000114    SSW99855.1    SSX20235.1   

Proteomes

UP000218220    UP000283053    UP000007151    UP000053268    UP000053240    UP000235965    + More
UP000002358    UP000215335    UP000183832    UP000005203    UP000027135    UP000053825    UP000053105    UP000242457    UP000091820    UP000078542    UP000076502    UP000078541    UP000078492    UP000053097    UP000075809    UP000005205    UP000007755    UP000007266    UP000078540    UP000019118    UP000036403    UP000030742    UP000075880    UP000069940    UP000249989    UP000075883    UP000075885    UP000030765    UP000069272    UP000008820    UP000075920    UP000075886    UP000000311    UP000075900    UP000192223    UP000076407    UP000075882    UP000075840    UP000002320    UP000245037    UP000075903    UP000075902    UP000008237    UP000076408   

Pfam

PF13229   Beta_helix        + More
PF05048   NosD
PF12708   Pectate_lyase_3
PF02269   TFIID-18kDa
PF05485   THAP

Interpro

IPR039448   Beta_helix        + More
IPR011050   Pectin_lyase_fold/virulence       
IPR012334   Pectin_lyas_fold       
IPR006626   PbH1       
IPR007742   NosD_dom       
IPR024535   Pectate_lyase_SF_prot       
IPR003195   TFIID_TAF13       
IPR009072   Histone-fold       
IPR006612   THAP_Znf       

SUPFAM

SSF51126   SSF51126        + More
SSF47113   SSF47113       

Gene 3D

2.160.20.10     1.10.20.10    

CDD

cd07978  TAF13

ProteinModelPortal

A0A2A4JW47   A0A3S2NAD1   A0A212FBQ1   A0A2W1B8K1   A0A194Q1D7   S4PAE8   + More
A0A0N0PAP9   A0A2H1VH86   A0A2J7QBL5   K7IM45   A0A232FG39   A0A1J1HS36   A0A088A1B9   A0A067QNE5   A0A0L7R5P8   A0A0M9A026   A0A0C9QWR0   A0A310SJF3   A0A2A3EM40   A0A1A9WEX0   A0A151I693   A0A154P6V9   A0A195FWM9   A0A195E3S2   A0A026WVV6   A0A151XA95   A0A158NNB7   F4WLG8   D6WKG0   A0A195AUI8   N6U0L2   A0A0J7P2B6   U4TY03   A0A2J7QBL1   A0A182JM71   A0A182HFI6   E9IUG5   A0A0K8W6D6   A0A182MRN2   A0A182P4V8   A0A1Y1M6F4   A0A084VND7   A0A0T6AVE5   A0A182F615   Q17JG4   A0A182W7A4   A0A182Q578   A0A182GSK8   E1ZZV0   A0A182RC82   A0A1W4WNU1   A0A182WU99   A0A182L1Q6   A0A182HUW7   B0W7M5   A0A2P8Z2J0   A0A182USE2   A0A1S4HDJ6   A0A182TIB1   A0A1B6FCS6   A0A1Q3EXJ2   A0A1B6KS84   E2C3T7   A0A1B6DZD4   A0A0A1XA85   A0A1Y1M2V5   A0A182Y021   A0A336LQZ3  

KEGG

101743179    no KO assigned | (RefSeq) uncharacterized LOC101743179

GO

GO:0006366   GO:0046982   GO:0016021   GO:0003677  

PANTHER

PTHR11380  

Length:

509

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.01241

Exp number, first 60 AAs:

0.00022

Total prob of N-in:

0.00174

outside

1  -  509

 

 

Pi

286.671115

Theta

173.89764

Tajima's D

2.100065

CLR

0.260394

CSRT

0.897755112244388

Interpretation

Uncertain