Gene

KWMTBOMO09788  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA013111

Annotation

cellular_retinoic_acid_binding_protein_[Bombyx_mori]

Location

Bomo_Chr16(-):9322823-9348664      View in EpiBrowser

Location in the cell

Cytoplasmic   Reliability : 3.476

CDS

ATGGAATTCGTAGGCAAGAAATACAAGATGACTTCCTCCGAGAACTTTGATGAGTTCATGAAGACCATCGGCGTGGGTCTGATCACCCGCAAAGCCGCCAACGCGGTCACCCCGACCGTGGAGCTCCGTAAGGATGGTGACGAATACAATTTAGTCACCTCTTCAACCTTCAAGACCACTGAGATGAAGTTCAAGCCCGGCGAAGAGTTCGAAGAGGACCGCGCTGACGGTGCTAAGGTGAAATCCGTATGCACATTCGAAGGCAACACCCTCAAGCAAGTCCAGAAGGCCCCCGACGGTCTTGAAGTCACTTACGTCAGGGAATTCGGCCCTGAGGAGATGAAAGCTGTGATGACAGCTAAGGACGTGACTTGCACCAGAGTCTACAAGGTCCAGTAA

Protein

MEFVGKKYKMTSSENFDEFMKTIGVGLITRKAANAVTPTVELRKDGDEYNLVTSSTFKTTEMKFKPGEEFEEDRADGAKVKSVCTFEGNTLKQVQKAPDGLEVTYVREFGPEEMKAVMTAKDVTCTRVYKVQ

Similarity

Belongs to the calycin superfamily. Fatty-acid binding protein (FABP) family.

Uniprot

Q2QEH2   O61236   A0A212FN10   Q0WX97   M4M9L0   A0A0K8SYG9   + More
B6CMG0   A0A2A4J1H5   A0A1E1WC74   A0A3G1T1H0   Q6F440   I4DJD9   I4DN38   A0A0A7BYM6   A0A0N1I4W9   A0A2A4AQU9   S4P8B4   A0A437BU53   A0A2H1V4G9   A0A0L7LQG2   A0A1W4WNF7   A0A195BSW7   A0A3L8D7Y7   F6MFX1   D5LXI1   V9IIS4   J3JTW6   A0A151XBY8   Q76LA4   A0A0L7R215   A0A139WGC8   F4WMC4   A0A0K8TL91   A0A2A3ERN5   A0A1W4WMG9   A0A088AE74   A0A158P294   A0A0J7L3Z2   K7IX95   A0A0N0U575   K7IX94   A0A0G3YKZ9   E2AWC1   E2BJH6   T1E383   A0A232EJI6   A0A411G7C2   D2A4Y9   R4V0J3   A0A1L8DZ33   A0A1B0EX54   R4WCU0   R4WCK5   A0A1B6KYE8   A0A0V0G2M9   T1HLW6   A0A1A9V645   A0A224XNU5   A0A0P4VYV4   B3P4J3   A0A023F8M4   A0A1B6DMS6   A0A0T6BBK9   A0A2S2PV04   A0A023EFS1   Q177Y4   T1DJZ8   A0A336N2B1   A0A182VXR6   A0A084WE60   A0A2M4AEI4   A0A2M4CU83   A0A182FP88   A0A2M3YZB1   A0A182PUC3   F5HLQ7   A0A1Q3F8S3   A0A1B6H6S1   A0A182IWT0   B0X309   A0A1B6GJK3   Q1M0X8   C4WXA0   T1J6K4   A0A2S2NIM3   A0A1B6LZC8   A0A195F346   Q8WR15   A0A443SL95   A0A1L8EC06   Q0PXX4   A0A1Y1NDG9   A0A026WE75   A0A336LH33   E9G4Z6   A0A1B6KEV6   A0A1S3DRQ9   A0A1I8M6S3  

Pubmed

17966127    9618497    22118469    18760362    28756777    22651552    + More
26354079    23622113    26227816    30249741    22516182    23537049    14745104    18362917    19820115    21719571    26369729    21347285    20075255    25702953    20798317    24330624    28648823    23691247    27129103    17994087    25474469    24945155    26483478    17510324    24438588    12364791    14747013    17210077    12034496    28004739    24508170    21292972    25315136   

EMBL

DQ109670    DQ311348    DQ539018    EF112401    AB262579    AAZ82096.1    + More
ABD36292.1    ABG20590.1    ABK97427.1    BAE96009.1    U75307    AAC24317.1    AGBW02007650    OWR55117.1    AB267808    BAF02663.1    KC127672    AGG56524.1    GBRD01007489    JAG58332.1    EU325560    KZ149898    ACB54950.1    PZC78673.1    NWSH01003893    PCG65719.1    GDQN01006476    JAT84578.1    MG992392    AXY94830.1    AB180450    BAD26694.1    AK401407    KQ459582    BAM18029.1    KPI98807.1    AK402706    BAM19328.1    KC966936    AHV85210.1    KQ461183    KPJ07543.1    NWMT01000107    PCC99322.1    GAIX01006016    JAA86544.1    RSAL01000008    RVE53998.1    ODYU01000601    SOQ35676.1    JTDY01000327    KOB77682.1    KQ976418    KYM89450.1    QOIP01000012    RLU16018.1    JF815103    AEG74454.1    GU980922    ADE27971.1    JR049662    AEY61033.1    APGK01053973    BT126675    KB741240    KB632257    AEE61638.1    ENN72097.1    ERL90786.1    KQ982315    KYQ57859.1    AB083010    BAC54131.1    KQ414666    KOC64879.1    KQ971345    KYB27002.1    GL888217    EGI64768.1    GDAI01002486    JAI15117.1    KZ288192    PBC34398.1    ADTU01001164    LBMM01000937    KMQ97189.1    AAZX01000617    AAZX01000618    KQ435794    KOX73671.1    KM507112    AKM28436.1    GL443280    EFN62281.1    GL448571    EFN84133.1    GALA01000600    JAA94252.1    NNAY01003987    OXU18530.1    MH366001    QBB01810.1    EFA05702.1    KC632308    AGM32122.1    GFDF01002361    JAV11723.1    AJWK01030958    AJWK01030959    AJWK01030960    AJWK01030961    AK416989    BAN20204.1    AK416948    BAN20163.1    GEBQ01023515    JAT16462.1    GECL01003738    JAP02386.1    ACPB03014789    GFTR01002259    JAW14167.1    GDKW01001862    JAI54733.1    CH954181    EDV49508.1    GBBI01000966    JAC17746.1    GEDC01010368    JAS26930.1    LJIG01002210    KRT84730.1    GGMS01000088    MBY69291.1    JXUM01012309    JXUM01012310    GAPW01005897    KQ560351    JAC07701.1    KXJ82893.1    CH477369    EAT42473.1    GAMD01001196    JAB00395.1    UFQT01006868    SSX36141.1    ATLV01023157    KE525341    KFB48504.1    GGFK01005717    MBW39038.1    GGFL01004726    MBW68904.1    GGFM01000835    MBW21586.1    AAAB01008904    EGK97217.1    EGK97218.1    GFDL01011093    JAV23952.1    GECU01037290    JAS70416.1    DS233316    DS232304    EDS29395.1    EDS39511.1    GECZ01014401    GECZ01007162    JAS55368.1    JAS62607.1    AY792955    AAX33735.1    ABLF02030056    AK342527    BAH72520.1    JH431878    GGMR01004411    MBY17030.1    GEBQ01010987    JAT28990.1    KQ981855    KYN34806.1    AF458289    AAL68638.1    NCKV01001465    RWS28297.1    GFDG01002529    JAV16270.1    DQ673412    ABG81985.1    GEZM01006856    JAV95618.1    KK107261    EZA53971.1    UFQS01003764    UFQT01003764    SSX15925.1    SSX35267.1    GL732532    EFX85386.1    GEBQ01029975    JAT10002.1   

Proteomes

UP000007151    UP000218220    UP000053268    UP000053240    UP000243750    UP000283053    + More
UP000037510    UP000192223    UP000078540    UP000279307    UP000019118    UP000030742    UP000075809    UP000053825    UP000007266    UP000007755    UP000242457    UP000005203    UP000005205    UP000036403    UP000002358    UP000053105    UP000000311    UP000008237    UP000215335    UP000092461    UP000015103    UP000078200    UP000008711    UP000069940    UP000249989    UP000008820    UP000075920    UP000030765    UP000069272    UP000075885    UP000007062    UP000075880    UP000002320    UP000007819    UP000078541    UP000288716    UP000079169    UP000053097    UP000000305    UP000095301   

PRIDE

Q2QEH2    Q76LA4   

Pfam

PF00061   Lipocalin

Interpro

IPR000566   Lipocln_cytosolic_FA-bd_dom        + More
IPR000463   Fatty_acid-bd       
IPR012674   Calycin       
IPR031259   ILBP       

SUPFAM

SSF50814   SSF50814       

Gene 3D

2.40.128.20    

ProteinModelPortal

Q2QEH2   O61236   A0A212FN10   Q0WX97   M4M9L0   A0A0K8SYG9   + More
B6CMG0   A0A2A4J1H5   A0A1E1WC74   A0A3G1T1H0   Q6F440   I4DJD9   I4DN38   A0A0A7BYM6   A0A0N1I4W9   A0A2A4AQU9   S4P8B4   A0A437BU53   A0A2H1V4G9   A0A0L7LQG2   A0A1W4WNF7   A0A195BSW7   A0A3L8D7Y7   F6MFX1   D5LXI1   V9IIS4   J3JTW6   A0A151XBY8   Q76LA4   A0A0L7R215   A0A139WGC8   F4WMC4   A0A0K8TL91   A0A2A3ERN5   A0A1W4WMG9   A0A088AE74   A0A158P294   A0A0J7L3Z2   K7IX95   A0A0N0U575   K7IX94   A0A0G3YKZ9   E2AWC1   E2BJH6   T1E383   A0A232EJI6   A0A411G7C2   D2A4Y9   R4V0J3   A0A1L8DZ33   A0A1B0EX54   R4WCU0   R4WCK5   A0A1B6KYE8   A0A0V0G2M9   T1HLW6   A0A1A9V645   A0A224XNU5   A0A0P4VYV4   B3P4J3   A0A023F8M4   A0A1B6DMS6   A0A0T6BBK9   A0A2S2PV04   A0A023EFS1   Q177Y4   T1DJZ8   A0A336N2B1   A0A182VXR6   A0A084WE60   A0A2M4AEI4   A0A2M4CU83   A0A182FP88   A0A2M3YZB1   A0A182PUC3   F5HLQ7   A0A1Q3F8S3   A0A1B6H6S1   A0A182IWT0   B0X309   A0A1B6GJK3   Q1M0X8   C4WXA0   T1J6K4   A0A2S2NIM3   A0A1B6LZC8   A0A195F346   Q8WR15   A0A443SL95   A0A1L8EC06   Q0PXX4   A0A1Y1NDG9   A0A026WE75   A0A336LH33   E9G4Z6   A0A1B6KEV6   A0A1S3DRQ9   A0A1I8M6S3  

PDB

3PPT     E-value=1.80225e-25,     Score=281

KEGG

692775    no KO assigned | (RefSeq) Crabp; cellular retinoic acid binding protein

GO

GO:0008289   GO:0005215   GO:0006810   GO:0030131   GO:0005488   GO:0008565   GO:0015031   GO:0009258   GO:0016155   GO:0003824  

PANTHER

PTHR11955  

Length:

132

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00055

Exp number, first 60 AAs:

0.00055

Total prob of N-in:

0.35821

outside

1  -  132

 

 

Pi

250.208437

Theta

184.114904

Tajima's D

1.455159

CLR

0.343012

CSRT

0.781010949452527

Interpretation

Uncertain