SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO09787
Pre Gene Modal
BGIBMGA012918
Annotation
PREDICTED:_unconventional_myosin-XVIIIa?_partial_[Bombyx_mori]
Location in the cell
Nuclear   Reliability : 4.456
 

Sequence

CDS
ATGTTCAACTTTATGAAAAAGTCCACCGTGCTGGCTGGAGGCGACAACGGTGGCTACGATGATCGCGACGGAGAGAAAGAACGAAGAAAGAAAGAGAAGAAGGAGAGGAAGGAACGAGAGAAGAGAGAGAGGATCGCAGCTGGCCTCGAAGAGCCTCTCCGACTTGAGGAGGTCCGACGATCGCTCAAATTGCGGGGTAAACGCAAGGAAAAGGAAAAGTTGCCTTCTGGTATCACCGCTGACTACACCGCCTCGCTGTTCGCCCATCTGGAACACGATTCCAATTATTCGAACTACCCGCTGATTTCCAACTCCGGTTCGAATTCGAACTTGAGCGACGAGACAAACCATTTGTCGCCGAGCTTCCCCACAACGCACACGTGGGGCAAAAAAGAAAGCATTCTACAGTCGGATAGTTCAGAGACCTCTCTAAATTCTTTGAATAACCCAAATAATATTAACAACACCAGTCCACGACAACCGCCGAATCTACCTCCGATTCCACCTCGACCTCCGAAACGAGGAATCCTTAAAGGCCCTCGTCTAAGCAATACTAGTTCGAATTCTCAAGAGAGTAACGTTAATAATGCCGATGTAGTGGACCATGTGACCAACGGTCAAGATTCTAACCTGTTGGCACGTAACACGCAACAAAACGAAACCGTGTCTTATGGTATTTCTGCATCGAAGAGTACTTCGTCCAGTGATGACTTGCAACACGTTCAAAACTTTACAAAGAAAGTCATTCACAGTCCCGTGGAGATGCAAAGCAAAAATTATAAAAACAACTCCGCCAATCCAACAATCACAACGCAAGATGTTGACGCAGCGCCAAAGACGAACGGAAACAGTTACATGGGAATAACATCCACTTCTCCCAGCGCTGATTCCTTGACCGACACCACGACAAATTCCTCATTTGCTACACCACCGTTTTCTACGTCGCCCGTTGGTGAATCTCAGGGTTTCCACAGATGGTCACGAACCAGTAACTTTGACGATACCTACCTACCATTACCGGCCATAATGCCAGTTCAACTGCCGAAGCCGAGAACATTAACGATTCAAAGGCAAAAAGCACCGCGTAACGACTTCGGATTCAGTTTACGAAGGGCAATGGTCCAAGAAAGAATATTCATAGGCGATCTAAATAGTCACGGAAATGGCTTAACGAACGGGGACAACAAATGTAGTGGCACCACTAATTTGATCAGCAAATTGATTTACAAGGCCGTTATCCTAGCAGAGCCCGGCTCTTATCCTGGAGCCAGCGAGACGGGCCTATTACCCGGTGACAGATTGCTCGAAGTTAATGGTATCAGCGTTGAGGAAAAAAGCAGAGAAGAGGTCATCGATCTGATTAAGGGCAGCCAAGATTACGTTACTATCAAGGTAAGCCAATCAGCAGTAATGTTATACACATTAATTTGA
Protein
MFNFMKKSTVLAGGDNGGYDDRDGEKERRKKEKKERKEREKRERIAAGLEEPLRLEEVRRSLKLRGKRKEKEKLPSGITADYTASLFAHLEHDSNYSNYPLISNSGSNSNLSDETNHLSPSFPTTHTWGKKESILQSDSSETSLNSLNNPNNINNTSPRQPPNLPPIPPRPPKRGILKGPRLSNTSSNSQESNVNNADVVDHVTNGQDSNLLARNTQQNETVSYGISASKSTSSSDDLQHVQNFTKKVIHSPVEMQSKNYKNNSANPTITTQDVDAAPKTNGNSYMGITSTSPSADSLTDTTTNSSFATPPFSTSPVGESQGFHRWSRTSNFDDTYLPLPAIMPVQLPKPRTLTIQRQKAPRNDFGFSLRRAMVQERIFIGDLNSHGNGLTNGDNKCSGTTNLISKLIYKAVILAEPGSYPGASETGLLPGDRLLEVNGISVEEKSREEVIDLIKGSQDYVTIKVSQSAVMLYTLI

Summary

Similarity
Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.
Pfam
PF17820   PDZ_6        + More
PF00063   Myosin_head
Interpro
IPR001478   PDZ        + More
IPR036034   PDZ_sf       
IPR041489   PDZ_6       
IPR027417   P-loop_NTPase       
IPR036961   Kinesin_motor_dom_sf       
IPR001609   Myosin_head_motor_dom       
SUPFAM
SSF50156   SSF50156        + More
SSF52540   SSF52540       
Gene 3D
PDB
4PQW     E-value=0.000337226,     Score=105

Ontologies

Topology

Length:
476
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.00052
Exp number, first 60 AAs:
0
Total prob of N-in:
0.00452
outside
1  -  476
 
 

Population Genetic Test Statistics

Pi
258.870521
Theta
174.260675
Tajima's D
1.557843
CLR
0.149817
CSRT
0.803309834508275
Interpretation
Uncertain
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