SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO09780
Pre Gene Modal
BGIBMGA001112
Annotation
reverse_transcriptase_[Danaus_plexippus]
Location
Bomo_Chr16(+):9125135-9130789      View in EpiBrowser
Location in the cell
Nuclear   Reliability : 1.545
 

Sequence

CDS
ATGGGAAGCGGGGGCTCCTGCCTTTACTGGTCGGAGCCGCGAGGACGCAAACCTCTTCAAAAATGCCCCAATCTCAAGCTCGACACCCGGCGATGGGATGTATGGCTGGAGGGTTTCCAGTCCCGAGGGTGTCGTAGATCCCAGGGGACCAAACCCCTGGTTAATAAAAAAGGAATAAATAGAAATGATGGACAATTGTACAAAGTTAGTACCCCAGGAGGGTACCGCCCGCGAGTCGGGCGGAGAATCCCTCCGTGCTTCCACCTCAGTGGAAGCACGCTGCCCCACGTATTCTGGGGGGGCAACAATTGCCAGGATGAAGGAGGCTGTGCGACGGGCAGCGGAATTCCCGTCGAACTGAGGCGCTCCCCGATCGCCGGCTCGATGCGCTCTGCGCTCGCCAGCGACTCGGGTGCGGTCAACCCCACCAGACCATCGGTGGGGAAAAAAAGGGGGCGAAGGAAGACCCCACTATCAACGTCCGACGACGGCGGCGCGTCATCCTCCAGCACCGAGGTGCCGGAAAAGACGATGGCCATCGAGGAGGTGGCTCCGGTGGTTGCGGGGCCTGCCGCAAAGAAAGAGACGATGCCCGCTCCCCAGTGGGCACCAGTAAGGAGGAGGGGCGCAGTGTCACCAGCGACGTCGGTGGAGTCGATGTCGACGTCGGCCGCGTCCCTGGCTAGCGGGGACGAGGCATTCCGCGACCTCGACCTTGCGCTGGTCAATCTGGCTAAGCTGCTGTCGACCGTGGCTGCCAAGGGCGCCGAGCCAGGCAGCAGCTACCGGAAAAGGCTCCGGGAGGGAGCGGCTATGGAACTCCCCCGTCTTGCAAGAGGGGACTCCCTTGTCGCCGATGCCTGCGCTGGCACACTCTGGGCCTCCCGCGAGGAAGATGGATACCAGCGTGCCCTCACGACCCGTGATGAGTGTGGCGGCGCCCATGCCAGCGCCTACTTCTGTGGCCCCTGTTCCACGAGTGCCTACTCCCGCGCTCCCTCACCCCCGCGGAGGGTTGAGTTGAGGCCTGCGCCGCCTCCCCAAATATCGGCCACCCCTGCATCCGTACAAAGAGGAAGGTTAAGGCCTGCGCCAGCGCAGGCTGAAGACATCCGTTCGCCACTGGCGAGGATGATAGACGAGTGGCCGGCGCTGCCGCGGCCCAGGCCTGCAGAGCCGCCAAGCAGAGAGGAAATGGCGGCCTGCATCTCGCGGGCGGTGGCGGTTGAGGTCCGCAAACACTTTGCCGGCCTCGAGGAGATGCTCCGCTCCTCGATTGGTTCCGGAGATGGCGTCCCGGCACCAACAGCCACGACCGCTTTACGGGATCAGGCCGCCCAGCCGACTTCCACTCCTGCCCCATCCGCAAGGGTGGCACGACGTGGAGGCCGGAATATCAGAGGTGCGGGTGCCCAGAATCCCGGCCCGCGATCCCAACCACAGCCTCGCCCCCTTCCTCCGCCCCCGTTAAGCATGGACGAGGGCTGGACAGAAGTGGTGAAGCGGGGCACCACAGCACGGCGACAGATAGCAGCTCTGGCAGCTCCCCGAGGGGGTCGAGCGCCGACCGCTACATCCCGAAACACAGCGCTGGCGGCCGTGACTGCTCCCCGCGAGGGTCGAGCACCGGCCGTTGGCAAAAAGAAAAACAAAAGGAAGAAGCCGCGCGCAGCGGGGTCGGCTGCCGTGGTAGTGACTTTGCTGCCGGCCGCTGCCGAAAAGGGCCTCACCTATAATGAGGTGATGGCCCGGGCGCGTGCAGCTGTAAACTTGACCGAAATCGGGGCAGAGGAAGGTCTACGCTTCCGGCACACCGCCAATGGGGCGAAAATGCTGGAGTGTCCCGGTGCCGATAGTTCTGGCATCGCGGACAAACTAGTGGCGACGCTCCGCGTGGCATTGCCGGAGGAAGAGGTGCGCGTGCACAGGCCGGTGAGGATGGCCGAGATTAGGATCACCGGCCTGGACGACTGCGCCACCAAGGAAGAGGTGGCAGCCGCGATAGCCGCCCAGGGGGGATGTGCTCCGGAGAGCGTGACCGTGGGCGAACTTCGCTCAGGGTACTCCGGGGCCAGATCGGCGTGGGCGCGCTGCCCTGTGGAGGCGGCCACTTCCTTGGCCACCCCTCCACCGGGAAGATCGACGGGGGATCCGGGGAGACTGCGCGTGGGCTGGATAGCGGCCCACGTGCGTCTCCAAGAACCACGTGCCTGGCGATGCCTCCGATGTTTTAGCACGGGGCACGGCCTCGCTAGGTGCACCAGCTCGGTTGACCGCAGCGGTCTTTGTTTCCGTTGCGGCCAGCCGGGCCACAAAGCAGCGTCCTGCACGGCCACCCCGCACTGCGCTCTGTGCGCTGCGGCCGGGCGCAGGGCAAACCACCGAGCGGGAGGCAAGGCGTGTTTCCCGTCCGGTAACAACACCGAACGAAACCGGCGCCGGAGATCAAAGCGCCGGCAAAAGAGAAGGTTGGCCAGAGGAGCACTGGCCAACGCTGTAATCCCCGTTGCGGCGCCGGTGCCGGAGGGCGGGGGCAGCAGTGAAAGGGAGGGGGCGATGGATGACATGCTGTCTCAGAGCATGGCGGAGTGGTCCATAGATGTGGCTGTGGTCGCCGAGCCGTACTTCGTTCCCCCGGCAAATGATTGCTGGTTTGGGGACGACGGCGGCCTGGCGGCCATAGTCATAAGAAGGGACGCGGCGATCCCCCCCCTGGCGATGGTGACCAGGGGCCAAGGGTTCGTCGCGGTGAAGCTGGAAGAGACCGTCGTGATCGGGGCATACTTCTCTCCGAACAGGCCTACCGTCGAGTTCGGGCATTTCCTGGGCGGGATCGGGGCGATTGCTCGCCGCCTCGCTCCTCGTCCAGTGATTCTCGCGGGGGACCTAAATGCGAAATCTGTCGCATGGGGCTCCCCCCGCTCGGACGCTCGTGGTAGGCTACTGGAGAGGTGGGCGAACGCGGCCGGCCTCTGTTTGTTGAATAGAGGGTCGGTTGCGACGTGCGTGCGGTGGCAAGGCGAGTCTATTGTGGACGTTACGTTCGCGAGCCCGGCCATCGCGCGTCGTATCCGCGACTGGAGGGTTTTGGAGGGGGCGGAGACACTGTCCGATCACCGATATATTCGGTTTGATCTCTCCGCCCGCTCCGCAGTCGCGGACGCCCACAGGGATTACCCACGTGGTGCGCCCCGGTCATTCCCCAGGTGGGCACTGAAGCGCCTGAATAAGGCGCTACTGATGGAAGCCTCTACGGTGGCGGCGTGGGCGCCCATGCGTCCACATCCGGTTGAGGTCGAGGGCGAAGCGGGGTGGTTCCGGGACACGATGCGTCGCATCTGCGACGTATCGATGCCCCGGATCAGCCCTCGGTCTCCCAATCGCCAGGCGTACTGGTGGTCGTCCGAAATCGCGCAACTCCGCGTGGAGTGCGTTCGGGCGAGGCGCGAGTGCGCTAGGCATCGCCGCCGTCGCCTGCCGCGTCGCAACGATCCGGTTGCGTTCGCGCTGGTGGAGGCCCGGCTGTACGGCGCATTTCGCGTCGCGCAGAGGGCTTTGCAGCTGGCCATCAGAAGAGCCAAGGATCAACACATGGAGGGTCTCTTGGAGACGCTCGATGGGGATCCGTGGGGGCGACCCTATCATATGCCTCAGCAGCTGCGGGAAATCGTCTCGGCGCTGTTTCCGCAGGAGCGGGAGGGATTTGTCGCTCCCGCTATGGACCCCCCGTCAGAATACGACGGCGACGTCCCTGCTGAGGTGCCCCATATAACGGGGGCGGAGCTCCATGTGGCAGTGCGTAAAATGTGCGCGAAGGACACTGCACCCGGCCCGGACGGCGTCCATGGCCGGGTTTGGGCCTTGGCTCTTGGTGCCCTGGGGGACCGACTCTTGAGGCTTTACAACTCCTGCCTCGAGTCGGGACGGTTTCCTTCATCGTGGAGGACGGGCAGACTCGTGCTGTTGAGAAAGGAGGGGCGCCCGGCGGATACTGCCGCTGGGTACCGTCCCATCGTGTTGCTGGATGAGGTGGGCAAGCTGCTGGAACGCATTCTGGCAGCCCGCATCATCCAGCATCTAGTCATGGTGGGACCCGATCTGTCGGCGGAGCAGTATGGCTTCCGAGAGGGCCGCTCAACGGTAGACGCGATCCTTCGCGTGCGGTCCCTCTCGGATGAGGCCGTCTCCGGGGGTGGGGTGGCTTTGGCGGTGTCACTCGATATCGCCAATGCGTTCAACACCCTGCCCTGGTCCGTGATAGGGGGGGCGCTGGAACGACACGGAGTGCCCCCTACCTTCGCCGGCTGGTGGGTTCCTACTTGGAAGACAGATCGGTCACGTGTACCGGACACGGTGGGATCGTGCACCGGTTCCCGGTCGTGCGCGGTGTTCCACAGGGACGACACGTTGGTCGTGGCCCGGGGGGGGAGTTTTGCTGAGTCTGCCCGTCTTGCTACGGCTGGGGTGGCGCATGTCGTCGGCAAAATCAGGAGATTGGGCCTCGACGTGGCGCTCAGTAAATCCGAGGCCATGTGGTTCCACAGGCCCCGGAGAGTGCCACCTGTCGATGCCCATATCGTGGTTGGAGGCGTCCGTATCGGGGTCGGGGTGCAGTTGAAGTACCTCGGCCTCATTCTGGACAGTCGTTGGACCTTCCGTGCTCACTTTCAGAATCTGGTCCCTCGTTTGTTGGGGGTGGCCGGCGCGTTAAGCCGGCTCCTTCCCAATGTCGGGGGGCCTGACCAGGTGACGCGCCGTCTCTATACAGGGGTGGTGCGATCAATGGCCCTATACGGGGCGCCCGTGTGGGGCCAGTCCCTGGCCGTGGGGGTAGCGAAGCTGCTGCAACGGCCGCAACGCACCATCGCGGTCAGGGTCATCCGTGGTTATCGCACCATCTCTTTCGAGGCGGCGTGTGTACTGGCTGGGACGCCGCCTTGGGTCCTGGAGGCGGAGGCGCTCGCTGCTGACTATCAGTGGCGGGCTGACCAGCCCCAGTGTGGTCAGAGCGCGGAGGGCCCAATCTCGGCGGTCCGTGCTGGAGGCATGGTCCAGACGGCTGGCCGATCCTTCGGCTGGTCGTAG
Protein
MGSGGSCLYWSEPRGRKPLQKCPNLKLDTRRWDVWLEGFQSRGCRRSQGTKPLVNKKGINRNDGQLYKVSTPGGYRPRVGRRIPPCFHLSGSTLPHVFWGGNNCQDEGGCATGSGIPVELRRSPIAGSMRSALASDSGAVNPTRPSVGKKRGRRKTPLSTSDDGGASSSSTEVPEKTMAIEEVAPVVAGPAAKKETMPAPQWAPVRRRGAVSPATSVESMSTSAASLASGDEAFRDLDLALVNLAKLLSTVAAKGAEPGSSYRKRLREGAAMELPRLARGDSLVADACAGTLWASREEDGYQRALTTRDECGGAHASAYFCGPCSTSAYSRAPSPPRRVELRPAPPPQISATPASVQRGRLRPAPAQAEDIRSPLARMIDEWPALPRPRPAEPPSREEMAACISRAVAVEVRKHFAGLEEMLRSSIGSGDGVPAPTATTALRDQAAQPTSTPAPSARVARRGGRNIRGAGAQNPGPRSQPQPRPLPPPPLSMDEGWTEVVKRGTTARRQIAALAAPRGGRAPTATSRNTALAAVTAPREGRAPAVGKKKNKRKKPRAAGSAAVVVTLLPAAAEKGLTYNEVMARARAAVNLTEIGAEEGLRFRHTANGAKMLECPGADSSGIADKLVATLRVALPEEEVRVHRPVRMAEIRITGLDDCATKEEVAAAIAAQGGCAPESVTVGELRSGYSGARSAWARCPVEAATSLATPPPGRSTGDPGRLRVGWIAAHVRLQEPRAWRCLRCFSTGHGLARCTSSVDRSGLCFRCGQPGHKAASCTATPHCALCAAAGRRANHRAGGKACFPSGNNTERNRRRRSKRRQKRRLARGALANAVIPVAAPVPEGGGSSEREGAMDDMLSQSMAEWSIDVAVVAEPYFVPPANDCWFGDDGGLAAIVIRRDAAIPPLAMVTRGQGFVAVKLEETVVIGAYFSPNRPTVEFGHFLGGIGAIARRLAPRPVILAGDLNAKSVAWGSPRSDARGRLLERWANAAGLCLLNRGSVATCVRWQGESIVDVTFASPAIARRIRDWRVLEGAETLSDHRYIRFDLSARSAVADAHRDYPRGAPRSFPRWALKRLNKALLMEASTVAAWAPMRPHPVEVEGEAGWFRDTMRRICDVSMPRISPRSPNRQAYWWSSEIAQLRVECVRARRECARHRRRRLPRRNDPVAFALVEARLYGAFRVAQRALQLAIRRAKDQHMEGLLETLDGDPWGRPYHMPQQLREIVSALFPQEREGFVAPAMDPPSEYDGDVPAEVPHITGAELHVAVRKMCAKDTAPGPDGVHGRVWALALGALGDRLLRLYNSCLESGRFPSSWRTGRLVLLRKEGRPADTAAGYRPIVLLDEVGKLLERILAARIIQHLVMVGPDLSAEQYGFREGRSTVDAILRVRSLSDEAVSGGGVALAVSLDIANAFNTLPWSVIGGALERHGVPPTFAGWWVPTWKTDRSRVPDTVGSCTGSRSCAVFHRDDTLVVARGGSFAESARLATAGVAHVVGKIRRLGLDVALSKSEAMWFHRPRRVPPVDAHIVVGGVRIGVGVQLKYLGLILDSRWTFRAHFQNLVPRLLGVAGALSRLLPNVGGPDQVTRRLYTGVVRSMALYGAPVWGQSLAVGVAKLLQRPQRTIAVRVIRGYRTISFEAACVLAGTPPWVLEAEALAADYQWRADQPQCGQSAEGPISAVRAGGMVQTAGRSFGWS

Summary

Uniprot
NA  
ProteinModelPortal
NA  
PDB
1WDU     E-value=2.06394e-11,     Score=172

Ontologies

KEGG
105841474    no KO assigned | (RefSeq) uncharacterized LOC105841474
GO
GO:0003676   GO:0008270   GO:0030117   GO:0030131   GO:0005488   GO:0008565   GO:0015031   GO:0009258   GO:0016155   GO:0003824  

Topology

Length:
1694
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.561759999999999
Exp number, first 60 AAs:
0
Total prob of N-in:
0.00007
outside
1  -  1694
 
 

Population Genetic Test Statistics

Pi
15.958352
Theta
105.96741
Tajima's D
0
CLR
203.829372
CSRT
0.362581870906455
Interpretation
Uncertain

Multiple alignment of Orthologues

 
 

Gene Tree

 
 
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