Gene

KWMTBOMO09772

Pre Gene Modal

BGIBMGA012924

Annotation

PREDICTED:_N-glycosylase/DNA_lyase_isoform_X2_[Amyelois_transitella]

Location

Bomo_Chr16(-):8919895-8924459      View in EpiBrowser

Location in the cell

Cytoplasmic   Reliability : 2.19 Nuclear   Reliability : 2.022

CDS

ATGGTGGAAAAGCTGTGCACAAATTATGGTGAAGAAATCTGTAAGCATGAAAATACTGTGCATTACTCCTTCCCTGATATTGAGAAATTGGAGTGCCCAAAAGTTGAAACACAACTAAGAAACCTAGGGTTTGGATACAGAGCGAAATTCATACAAAAATCAGCATCACAAATAGTTGAATGGGGTGGTGCGAAATGGTTTGATGGTCTTCAAAACATGAAGTACAAAGATGCTAAATGTGAACTCATGAAATTACACGGAATCGGACCTAAAGTCGCGGACTGCATTTGTCTTATGTCACTAAATCATCTCGAAGCACTGCCAGTGGACACGCATGTTTATCAGATAGCAGCCCAGAACTATTTACCACATTTACGAGGAAAGAAGAATGTAACAGAAAAGATGTACACAGAGATCGGAGATCATTTTAGAACGCTCTATGGTGATATGGCTGGGTGGGCTCACACTATTTTATTCTGCTCAGATTTAAAGAAATTCCAGCTTGGTGATAATTCTCAAGTAAATGAATGTTCAAAACCGAAAAGAAAAAGAAAAAAGTAA

Protein

MVEKLCTNYGEEICKHENTVHYSFPDIEKLECPKVETQLRNLGFGYRAKFIQKSASQIVEWGGAKWFDGLQNMKYKDAKCELMKLHGIGPKVADCICLMSLNHLEALPVDTHVYQIAAQNYLPHLRGKKNVTEKMYTEIGDHFRTLYGDMAGWAHTILFCSDLKKFQLGDNSQVNECSKPKRKRKK

Uniprot

H9JTR2   S4NSP3   A0A2A4JB61   A0A194PZR1   A0A3S2LHL9   A0A0N1IPC4   + More
A0A212FMB8   A0A0L7KXR5   A0A2W1BUI9   A0A067QHL1   A0A1B0CTL2   A0A2J7QV26   B0WKR6   D6WPN3   A0A182VQU7   A0A1B6EGV1   A0A1W4WYJ9   E9G475   A0A1S4FIL4   A0A182MJ91   Q7PYB2   A0A182TW63   Q16JX8   A0A182XBQ1   A0A182I0I7   A0A182VAG4   N6TPV9   A0A182RBY0   A0A0N7ZBT1   A0A0P5GBS8   A0A0P4W234   A0A0N8E0F8   A0A0P5DEN6   A0A0P5L7B5   A0A182N4Y3   A0A0N7ZPB2   A0A182IST3   A0A084VRR6   A0A0N8D442   A0A2S2NPN2   A0A0P6CMU1   A0A0P5AYI1   A0A0P5SMX4   A0A0P5Z1A3   A0A0P6E540   A0A0P6CPD8   H2CP63   A0A182YJX6   A0A182T7M4   A0A2H8TVZ3   A0A182K2E5   A0A182F6X6   A0A0P6DQX9   A0A0P5H3P3   J9K746   A0A2S2RAM6   E0VWU9   A0A0P5NUT1   A0A0P6J3Y6   A0A182PKC7   A0A0K8T7Y0   A0A0A9W576   W5JJN5   A0A210R1C6   A0A182KM85   A0A0N8DYP6   A0A182QC32   A0A0A9YQW9   A0A224XCP5   A0A0P6GPD2   A0A1B6MEG0   A0A0P5A7A0   A0A0P5HB12   A0A162NVS3   A0A0P5WFE9   K1RSU3   A0A023F2P9   B4JX36   A0A087UL83   A0A1B6GIX5   U4U8S6   A0A1I8P114   A0A1B6FIX7   A0A3G1VUD0   A0A1B6L4H6   A0A077X2A0   A0A1A8EB80   Q16ZM0   A0A1A8Q9B9   A0A1A9VEL7   A0A0L0C421   V9LDS9   A7SGZ3   A0A1I8N3R6   A0A0J7KEW5   B4MA54   W5UE69   A0A401P0C1   A0A2C9K4U8   A0A2B4RZ77  

Pubmed

19121390    23622113    26354079    22118469    26227816    28756777    + More
24845553    18362917    19820115    21292972    12364791    14747013    17210077    17510324    23537049    24438588    21983336    25244985    20566863    25401762    20920257    23761445    28812685    20966253    22992520    25474469    17994087    26108605    24402279    17615350    25315136    23127152    30297745    15562597   

EMBL

BABH01003421    GAIX01013992    JAA78568.1    NWSH01002123    PCG69089.1    KQ459582    + More
KPI98817.1    RSAL01000008    RVE54005.1    KQ460635    KPJ13434.1    AGBW02007651    OWR54898.1    JTDY01004729    KOB67824.1    KZ149898    PZC78659.1    KK853400    KDR07858.1    AJWK01027765    NEVH01010479    PNF32439.1    DS231975    EDS30008.1    KQ971354    EFA06198.1    GEDC01000177    JAS37121.1    GL732531    EFX85705.1    AXCM01003997    AAAB01008987    EAA01084.4    CH477987    EAT34590.1    APCN01002082    APGK01025891    KB740605    ENN80038.1    GDRN01078805    JAI62512.1    GDIQ01248445    JAK03280.1    GDRN01078806    JAI62511.1    GDIQ01074004    JAN20733.1    GDIP01158595    JAJ64807.1    GDIQ01173773    JAK77952.1    GDIP01225841    JAI97560.1    ATLV01015773    KE525036    KFB40660.1    GDIP01070711    JAM33004.1    GGMR01006516    MBY19135.1    GDIQ01090859    JAN03878.1    GDIP01192523    JAJ30879.1    GDIP01137740    JAL65974.1    GDIP01051594    JAM52121.1    GDIQ01082298    JAN12439.1    GDIP01011483    JAM92232.1    JN090125    AEM59540.1    GFXV01006658    MBW18463.1    GDIQ01074003    JAN20734.1    GDIQ01232543    GDIQ01076753    JAK19182.1    ABLF02037401    GGMS01017179    MBY86382.1    DS235824    EEB17855.1    GDIQ01137437    JAL14289.1    GDIQ01023563    JAN71174.1    GBRD01004177    GBRD01001421    JAG61644.1    GBHO01043584    GBHO01043583    GBHO01043582    GBHO01016662    GBHO01016661    GBHO01011680    GBHO01011678    JAG00020.1    JAG00021.1    JAG00022.1    JAG26942.1    JAG26943.1    JAG31924.1    JAG31926.1    ADMH02001329    ETN62979.1    NEDP02000938    OWF54701.1    GDIQ01078900    JAN15837.1    AXCN02000187    GBHO01011679    JAG31925.1    GFTR01007682    JAW08744.1    GDIQ01032680    GDIQ01032288    JAN62449.1    GEBQ01005702    JAT34275.1    GDIP01206638    JAJ16764.1    GDIQ01232544    JAK19181.1    LRGB01000531    KZS18307.1    GDIP01086907    JAM16808.1    JH817012    EKC37606.1    GBBI01003254    JAC15458.1    CH916376    EDV95312.1    KK120364    KFM78122.1    GECZ01007506    JAS62263.1    KB632095    ERL88758.1    GECZ01019618    JAS50151.1    MH143575    AYK27449.1    GEBQ01021411    JAT18566.1    LK023379    CDS13398.1    HAEA01014713    SBQ43193.1    CH477488    EAT40106.1    HAEG01011581    SBR90131.1    JRES01000940    KNC26986.1    JW878229    AFP10746.1    DS469656    EDO37002.1    LBMM01008506    KMQ88819.1    CH940655    EDW66113.1    JT413520    AHH40281.1    BFAA01001508    GCB66554.1    LSMT01000197    PFX23764.1   

Proteomes

UP000005204    UP000218220    UP000053268    UP000283053    UP000053240    UP000007151    + More
UP000037510    UP000027135    UP000092461    UP000235965    UP000002320    UP000007266    UP000075920    UP000192223    UP000000305    UP000075883    UP000007062    UP000075902    UP000008820    UP000076407    UP000075840    UP000075903    UP000019118    UP000075900    UP000075884    UP000075880    UP000030765    UP000076408    UP000075901    UP000075881    UP000069272    UP000007819    UP000009046    UP000075885    UP000000673    UP000242188    UP000075882    UP000075886    UP000076858    UP000005408    UP000001070    UP000054359    UP000030742    UP000095300    UP000078200    UP000037069    UP000001593    UP000095301    UP000036403    UP000008792    UP000221080    UP000288216    UP000076420    UP000225706   

PRIDE

H9JTR2   

Pfam

PF00730   HhH-GPD        + More
PF07934   OGG_N
PF00633   HHH
PF07890   Rrp15p

Interpro

IPR023170   HTH_base_excis_C        + More
IPR003265   HhH-GPD_domain       
IPR012904   OGG_N       
IPR011257   DNA_glycosylase       
IPR000445   HhH_motif       
IPR012459   Rrp15       
IPR003583   Hlx-hairpin-Hlx_DNA-bd_motif       

SUPFAM

SSF48150   SSF48150       

Gene 3D

1.10.1670.10    

CDD

cd00056  ENDO3c

ProteinModelPortal

H9JTR2   S4NSP3   A0A2A4JB61   A0A194PZR1   A0A3S2LHL9   A0A0N1IPC4   + More
A0A212FMB8   A0A0L7KXR5   A0A2W1BUI9   A0A067QHL1   A0A1B0CTL2   A0A2J7QV26   B0WKR6   D6WPN3   A0A182VQU7   A0A1B6EGV1   A0A1W4WYJ9   E9G475   A0A1S4FIL4   A0A182MJ91   Q7PYB2   A0A182TW63   Q16JX8   A0A182XBQ1   A0A182I0I7   A0A182VAG4   N6TPV9   A0A182RBY0   A0A0N7ZBT1   A0A0P5GBS8   A0A0P4W234   A0A0N8E0F8   A0A0P5DEN6   A0A0P5L7B5   A0A182N4Y3   A0A0N7ZPB2   A0A182IST3   A0A084VRR6   A0A0N8D442   A0A2S2NPN2   A0A0P6CMU1   A0A0P5AYI1   A0A0P5SMX4   A0A0P5Z1A3   A0A0P6E540   A0A0P6CPD8   H2CP63   A0A182YJX6   A0A182T7M4   A0A2H8TVZ3   A0A182K2E5   A0A182F6X6   A0A0P6DQX9   A0A0P5H3P3   J9K746   A0A2S2RAM6   E0VWU9   A0A0P5NUT1   A0A0P6J3Y6   A0A182PKC7   A0A0K8T7Y0   A0A0A9W576   W5JJN5   A0A210R1C6   A0A182KM85   A0A0N8DYP6   A0A182QC32   A0A0A9YQW9   A0A224XCP5   A0A0P6GPD2   A0A1B6MEG0   A0A0P5A7A0   A0A0P5HB12   A0A162NVS3   A0A0P5WFE9   K1RSU3   A0A023F2P9   B4JX36   A0A087UL83   A0A1B6GIX5   U4U8S6   A0A1I8P114   A0A1B6FIX7   A0A3G1VUD0   A0A1B6L4H6   A0A077X2A0   A0A1A8EB80   Q16ZM0   A0A1A8Q9B9   A0A1A9VEL7   A0A0L0C421   V9LDS9   A7SGZ3   A0A1I8N3R6   A0A0J7KEW5   B4MA54   W5UE69   A0A401P0C1   A0A2C9K4U8   A0A2B4RZ77  

PDB

1KO9     E-value=1.36378e-35,     Score=370

KEGG

101741017    K03660 N-glycosylase/DNA lyase [EC:3.2.2.- 4.2.99.18] | (RefSeq) N-glycosylase/DNA lyase

PATHWAY

03410    Base excision repair - Bombyx mori (domestic silkworm)

GO

GO:0003684   GO:0006284   GO:0006289   GO:0008534   GO:0016829   GO:0003824   GO:0006285   GO:0034039   GO:0005634   GO:0006364   GO:0016021   GO:0140078   GO:0003677   GO:0007004   GO:0070987   GO:0005739   GO:0031518   GO:0007420   GO:0055013   GO:0043524   GO:0003313   GO:0010975   GO:0006281   GO:0004222   GO:0016638   GO:0005488   GO:0005515   GO:0009258   GO:0016155  

Length:

186

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.01362

Exp number, first 60 AAs:

0.00011

Total prob of N-in:

0.52661

inside

1  -  186

 

 

Pi

187.893035

Theta

144.24008

Tajima's D

1.162793

CLR

0.027293

CSRT

0.700314984250787

Interpretation

Uncertain