SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO09761
Pre Gene Modal
BGIBMGA012908
Annotation
PREDICTED:_peripheral-type_benzodiazepine_receptor-associated_protein_1_isoform_X5_[Bombyx_mori]
Location
Bomo_Chr16(+):8831510-8845643      View in EpiBrowser
Location in the cell
Nuclear   Reliability : 3.52
 

Sequence

CDS
ATGGATGTTCGAAATTCACTTTACATGAACGGGGCATCCGCTGAAACGGTGGACATGTTGGATATTCCCGGACGAGGCCGTTGTTGCGTTTACATAGCACGTTTCTCCTACGACCCTCCGGAAATCGAAAGCGCAGAGGGCGAATTATCGATTTCGGCGGGTGATTATTTATTAGTATGGGGCGCGCCGGATCCAAATGTAACAATGTTGGAAGCGGAAATGTTAGACGGGCGTCGCGGTCTTGTGCCAGTTAATTTTGTTCAGAGACTAGTGGGAGAGGATCTTTTAGACTTCCATCAAGCTGTGGTGACGTCGATGCGAGATGTTGATGAGTCTGCGACGACTGCGGTCAGTGAATTGTCTCTTAGTAGGGACGTCGCTCGACTTAGTGAAACGGCGGACATTAATGAGGGTCCTGAAGATGACGACAATGTGCCCGCGCCGCGGCAGCTCAACCTCGAGAGGCAATTGAATAAGTCCGTGCTGATCAGCTGGATCGCGCCGGACGGAGTTCAACAGGCGAACATCGAGAGCTATCACGTGTATGTCGATGGAGTCCTCAAAACTACTGTGAAAGCTACAGAACGCACGAGGGCCCTTGTCGAAGGAGTCGATGCTGGTCGCCCTCATAGAATAAGCGTGCGTTCCGTAACTGCTTCACGGAGGACATCACGTGATGCTGCTTGCACGATGGTCATAGGAAAGGAGACTGTTAACATGGGCCCAACTTGTGTCAGGGCTAGTGGAGTGACTTGTTCTCAAGCCGTCATTTCCTGGTTGCCTGCCAATTCTAATCAGCAGCACATAGTTTGCGTTAACAATGTTGAGGTGCGGCTAGTGAAAGCAGGTGTCTATCGGCATACCATTACGGGACTTTCACCCAGTACTCAGTACAGAGTAACAGTACGGGCCAAAAATGGGAAGACTCTCCAGCCTTCGGGAATACCCGCAGAAGAAGCTCCAGGCGCTTACACGGACTTTAGGACTCTACCCAAAGGCTTACCGGATCCGCCCAATGAAATAATGGTGGAGGCCGGCCCGCAAGACGGCACTCTGCTGGTGACGTGGCAGCCGGTACAGCGTCCGCCCGCCTCTGGACCTGTAACCGGATACGCTGTATACGCTGACGGAAAAAAGGTCACGGACGTAGACTCGCCGACCGGTGACCACGCTCTCATCGATATCGGCAAACTGATCGGCCTCAATCCCAAATGTGTTACCGTTCGTACAAAATCGCGCGACAGCCAATCCAGTGATAGTGTACCGACGCCTATTCCGCCTGCGGTATTACGGGGCGTCGTATCGAGAATGCCTCGTGGTGCAGTCGCGCCGGTCTCGATTCAGCCGGGCACGTACAGGGGCCCTCAGCGACCGCAGCCCTATCAGCAACAGCAACAAGTCATTGAGCATGACGAAAATTTATCAGATAAGGAAATATTCCCAAACAATAACCGCCACGATCAGCAGCCAGCCCAGCAACCGTCCCAACCGGCGCAGGCGTCGCAACCGCCTTCGGGTCAGCAGTACCCGAATACACCAGCGTACCATGGCACGCAGCAACCGCCGTATCCTCAAGTCGCCCAGCTCCCAAGTAACCAGCAGGGTCAGTACCCTAACCAGCCGCAGCAGTACCAGAATCCACCACCAAGGACACACCACGAAAGAGGACGACCACCGAATCCTCAGCAGCACGGGCAGCCAAGCGGGATGCAATTGCAAGGACGAGGGGCAGCGGCTGCGGGTGGCGCGGTACCTCGTGGCCCGCAACCGGGTCAACGTCATGGACCCCAGAGCCACGCTCAATCCAAACGCAGCCGCTTCTTCATCGCGCTCTTTGATTACGATCCAGTTACAATGAGTCCGAATCCAGAGAGTTGTGACGAAGAATTGCCCTTCAGCGAGGGTGACACAATAAAGGTATGGGGGGACAAAGACGCTGACGGTTTCTACTGGGGCGAGTGCCGAGGCCGACGCGGATATGTGCCGCACAACATGGTTATGGAAGTTTCCGAACAAGAGGCCACGGGGCAACCTGCCGCCAAGCCAAGAGACCGATGGACCGACGCCTATGCTAATCAACCCGTTCGAAGAATGGTCGCTCTCTATGACTATGATCCGCAAGAGCTGAGCCCCAATGTAGATGCCGATGCGGAATTAAGTTTCCAGACTGGTCAAATTATCCACGTTTACGGTGATATGGATGATGACGGTTTCTACATGGCTGAAATCGACGGAGTCCGAGGACTGGTCCCCAGCAATTTCCTCACTGACGCCAACGAACAGTATACCAATGCCGGACAGAGTAGTCAAGTTGGCGGCCCAAATATGCGCGGATCGGGCGGGGTCGCAGGGCGCGGTAGGGGCATGGGCCCGGGGGCGTCCGGGGGGCCAGGGGGCTCTGGGCCGCCGGGACCGGGGGCGCGCGGGCCCCCTCCCCCTCCGAGAGACAATGTTGCCCCCGCGCCCCGCAACCATCACCGTAAGACAGATGCCTGCCCTCTTCCCCCTTCTCAATTAGACCACAACACATGCGCCAGTAATCCAGAACAGGCGAATTCTCAGGCGAGGGGGAGAGGCGCGTCGAGCGGACAGCCCCCGAACACGATCGCGCGAACGAGCGCTGGTAATGCGGGCACCCCCACCGTCCAGTCGCCCGGCAACGCACCCCCCAGCGGACCCCCCACCTCCAACAACTCCGCGAGCACTCCGCTTAATGCGACCGGGCCCACTAGCACAACGACGGGGGGTCCTACGGCGCAAACAACTACCAGACGCGGAGGTCCAGCGGTCGTGCCTTCCGCGCAGCCCCTCACGCCGGCGCAGCCCCCCTCATCCCAGCCCAACCTGATGCAGAAGTTCTCCGAAATGACGGCACCCGGTGGCGACATTCTTAGTAAAGGCAAAGAACTGATCTTCATGAAATTCGGTCTCGGTGGTAAATAA
Protein
MDVRNSLYMNGASAETVDMLDIPGRGRCCVYIARFSYDPPEIESAEGELSISAGDYLLVWGAPDPNVTMLEAEMLDGRRGLVPVNFVQRLVGEDLLDFHQAVVTSMRDVDESATTAVSELSLSRDVARLSETADINEGPEDDDNVPAPRQLNLERQLNKSVLISWIAPDGVQQANIESYHVYVDGVLKTTVKATERTRALVEGVDAGRPHRISVRSVTASRRTSRDAACTMVIGKETVNMGPTCVRASGVTCSQAVISWLPANSNQQHIVCVNNVEVRLVKAGVYRHTITGLSPSTQYRVTVRAKNGKTLQPSGIPAEEAPGAYTDFRTLPKGLPDPPNEIMVEAGPQDGTLLVTWQPVQRPPASGPVTGYAVYADGKKVTDVDSPTGDHALIDIGKLIGLNPKCVTVRTKSRDSQSSDSVPTPIPPAVLRGVVSRMPRGAVAPVSIQPGTYRGPQRPQPYQQQQQVIEHDENLSDKEIFPNNNRHDQQPAQQPSQPAQASQPPSGQQYPNTPAYHGTQQPPYPQVAQLPSNQQGQYPNQPQQYQNPPPRTHHERGRPPNPQQHGQPSGMQLQGRGAAAAGGAVPRGPQPGQRHGPQSHAQSKRSRFFIALFDYDPVTMSPNPESCDEELPFSEGDTIKVWGDKDADGFYWGECRGRRGYVPHNMVMEVSEQEATGQPAAKPRDRWTDAYANQPVRRMVALYDYDPQELSPNVDADAELSFQTGQIIHVYGDMDDDGFYMAEIDGVRGLVPSNFLTDANEQYTNAGQSSQVGGPNMRGSGGVAGRGRGMGPGASGGPGGSGPPGPGARGPPPPPRDNVAPAPRNHHRKTDACPLPPSQLDHNTCASNPEQANSQARGRGASSGQPPNTIARTSAGNAGTPTVQSPGNAPPSGPPTSNNSASTPLNATGPTSTTTGGPTAQTTTRRGGPAVVPSAQPLTPAQPPSSQPNLMQKFSEMTAPGGDILSKGKELIFMKFGLGGK

Summary

Uniprot
H9JTP6   A0A2W1BYG1   A0A2A4JHV1   A0A3Q0IST1  
Pubmed
19121390    28756777   
EMBL
BABH01003428    KZ149898    PZC78634.1    NWSH01001518    PCG71000.1   
Proteomes
UP000005204    UP000218220    UP000079169   
PRIDE
H9JTP6   
Pfam
PF07653   SH3_2        + More
PF14604   SH3_9
PF00041   fn3
Interpro
IPR035755   RIM-BP_SH3_3        + More
IPR001452   SH3_domain       
IPR036116   FN3_sf       
IPR040325   RIMBP1/2/3       
IPR036028   SH3-like_dom_sf       
IPR035753   RIM-BP_SH3_2       
IPR013783   Ig-like_fold       
IPR003961   FN3_dom       
SUPFAM
SSF50044   SSF50044        + More
SSF49265   SSF49265       
Gene 3D
2.60.40.10    
CDD
cd12012  SH3_RIM-BP_2
 cd00063  FN3
 cd12013  SH3_RIM-BP_3
ProteinModelPortal
H9JTP6   A0A2W1BYG1   A0A2A4JHV1   A0A3Q0IST1  
PDB
4Z89     E-value=5.43691e-27,     Score=305

Ontologies

KEGG
101746770    K17591 RIMS-binding protein 2 | (RefSeq) peripheral-type benzodiazepine receptor-associated protein
GO
GO:0005515   GO:0006508   GO:0008270   GO:0004222   GO:0016638   GO:0005488   GO:0009258   GO:0016155   GO:0003824  
PANTHER
PTHR14234  

Topology

Length:
980
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.000600000000000001
Exp number, first 60 AAs:
0.00018
Total prob of N-in:
0.00005
outside
1  -  980
 
 

Population Genetic Test Statistics

Pi
279.307993
Theta
205.486337
Tajima's D
0.781535
CLR
0
CSRT
0.599470026498675
Interpretation
Uncertain
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