Gene

KWMTBOMO09748  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA012903

Annotation

PREDICTED:_ubiquitin_fusion_degradation_protein_1_homolog_isoform_X1_[Amyelois_transitella]

Location

Bomo_Chr16(+):8694131-8699767      View in EpiBrowser

Location in the cell

Cytoplasmic   Reliability : 1.717 Nuclear   Reliability : 1.268

CDS

ATGTTTCAATTCGGATTCAATATGTTTCACGAAATATCTAGGCCATTTAATATGACTTATAGATGCTATTCAGTCTCTATGTTACCTGGGAATGAGAGACAGGACGTTGAAAGAGGTGGTAAAATAATTATGCCCCCATCGGCATTAGAACAACTCACAAGACTCAATATAGAATATCCTATGATATTCAAGTTGACAAATAAGAAATCAAAGAGGCTCACTCATTGTGGTGTGCTAGAGTTTGTAGCTGATGAAGGAAGAGTGTATCTGCCACATTGGATGATGGCAAATCTTGTTCTAGAAGAAGGAGCTTTAATACAAATTGAAAGTGTATCACTACCTGTAGCAACATTCTCTAAGTTCCAACCTTTATCAGAAGATTTTTTGGACATTACAAATCCGAAAGCTGTATTGGAAAATTGTTTGCGTAACTTCTCATGTTTAACAACCGGTGATGTCATCGCTATAAAGTACAACTCAAAAGTCTACGAGCTGTGTGTCCTGGAGACCAAACCCGGGAATGCTGTCATCATTATAGAGTGCGATATGAATGTAGAATTTGCTCCACCAGTCGGGTATAAGGAACAAGATCACGTGTCAAGGTCAAATGATGGAGCAGTAGAAGGTATGGATGAAGATCCTGCTGCGATGATGCCCGAATCTAGTGGCTTCAGGGCGTTTAGCGGCGAAGGCAACCGCCTCGATGGAAAGAAAAAGAAGTTGATCAGCGAGAGTGATTCCGAACCGGGAACTTCGCAACCCCGCCAGTCATATGTACGAGGCATTCCGGATTACGACTTTGTGATTGGTACACTGCGATTTATCAGAAATTCAAGACCAGCCAAAGACCCTAAAGAGGAGGCTCAAACCGAACCTTTTCAAGCATTTACAGGCGAAGGATTTACATTGCGTACTGCCAAGTCTAAGAACTAA

Protein

MFQFGFNMFHEISRPFNMTYRCYSVSMLPGNERQDVERGGKIIMPPSALEQLTRLNIEYPMIFKLTNKKSKRLTHCGVLEFVADEGRVYLPHWMMANLVLEEGALIQIESVSLPVATFSKFQPLSEDFLDITNPKAVLENCLRNFSCLTTGDVIAIKYNSKVYELCVLETKPGNAVIIIECDMNVEFAPPVGYKEQDHVSRSNDGAVEGMDEDPAAMMPESSGFRAFSGEGNRLDGKKKKLISESDSEPGTSQPRQSYVRGIPDYDFVIGTLRFIRNSRPAKDPKEEAQTEPFQAFTGEGFTLRTAKSKN

Uniprot

A0A2A4K305   A0A2H1V4U7   A0A212FMJ2   H9JTP1   S4PSD6   A0A1E1WP70   + More
A0A3S2PKI1   A0A194R2Z9   A0A194Q1F6   A0A1W4WF51   A0A2J7PMF2   A0A067R875   A0A0C9RI63   J3JWH4   A0A232F3L0   K7IRD7   E2B893   J9K1H9   C4WSF6   A0A2A3E7J7   A0A026VW06   A0A0M8ZUU9   A0A0J7KGH1   J9K462   A0A0K8RER8   A0A3L8D5S9   A0A154PE11   A0A151WSS0   A0A088A4B3   Q16WZ2   A0A023EQA0   A0A195CB84   A0A195FQP1   A0A1S3DL21   E0VMM4   Q16WZ1   A0A1S4FLI4   A0A182G4B6   A0A1E1XD09   A0A310SI08   A0A023FJT4   A0A1L8DT77   T1E370   L7M0E6   A0A131YTQ6   G3MHI1   A0A023GIB4   A0A1B0GHH7   A0A195BXD7   A0A2M4AKE4   A0A1Q3FBW4   A0A224Z338   A0A2R5L842   A0A2M4AK94   A0A182FRK6   A0A182K4E4   B0X5P5   A0A2M4BUZ0   W5J4X4   F4WXI7   A0A336M2W5   A0A2M4AKC8   A0A1B6E2B3   A0A2M4BV17   T1IT12   A0A131XGQ6   A0A182JG89   U5EN67   A0A182QHR6   A0A182PTR9   A0A182TZQ0   A0A182L8T6   Q7PUB8   A0A182HKJ1   A0A182VL45   A0A084VXV4   E2AHS1   A0A1Z5L6N8   A0A182X9K8   A0A0A9WCH1   A0A0P5RSA7   A0A0K8T3H3   A0A2L2YBJ6   A0A0P6C3X7   A0A182NR77   A0A0P4ZER3   A0A182YBD9   A0A0P5WQJ1   E9GNJ9   A0A0N8EHB2   A0A182VVT3   A0A0P5AX32   T1KMP3   A0A182RNJ8   A0A0P5Z195   A0A1B6LNQ4   A0A0A9WG80   A0A3S3NUU7   A0A182LTH9   A0A1B6HJF9  

Pubmed

22118469    19121390    23622113    26354079    24845553    22516182    + More
28648823    20075255    20798317    24508170    30249741    17510324    24945155    20566863    26483478    28503490    24330624    25576852    26830274    22216098    28797301    20920257    23761445    21719571    28049606    20966253    12364791    14747013    17210077    24438588    28528879    25401762    26823975    26561354    25244985    21292972   

EMBL

NWSH01000188    PCG78627.1    ODYU01000678    SOQ35861.1    AGBW02007651    OWR54910.1    + More
BABH01003438    BABH01003439    GAIX01000025    JAA92535.1    GDQN01002259    JAT88795.1    RSAL01000008    RVE54020.1    KQ460878    KPJ11620.1    KQ459582    KPI98824.1    NEVH01024021    PNF17513.1    KK852677    KDR18679.1    GBYB01007945    JAG77712.1    BT127592    AEE62554.1    NNAY01001120    OXU25068.1    GL446286    EFN88095.1    ABLF02021668    AK340169    BAH70826.1    KZ288344    PBC27685.1    KK107727    EZA47978.1    KQ435840    KOX71427.1    LBMM01007874    KMQ89344.1    ABLF02031546    GADI01004222    JAA69586.1    QOIP01000013    RLU15521.1    KQ434874    KZC09654.1    KQ982769    KYQ50896.1    CH477549    EAT39129.1    GAPW01002864    JAC10734.1    KQ978023    KYM97960.1    KQ981335    KYN42617.1    DS235317    EEB14630.1    EAT39130.1    JXUM01000125    JXUM01055969    KQ561891    KQ560101    KXJ77245.1    KXJ84562.1    GFAC01002048    JAT97140.1    KQ766043    OAD53769.1    GBBK01003048    JAC21434.1    GFDF01004422    JAV09662.1    GALA01000099    JAA94753.1    GACK01008485    JAA56549.1    GEDV01006642    JAP81915.1    JO841332    AEO32949.1    GBBM01001721    JAC33697.1    AJWK01005168    KQ976401    KYM92611.1    GGFK01007881    MBW41202.1    GFDL01010043    JAV25002.1    GFPF01013091    MAA24237.1    GGLE01001550    MBY05676.1    GGFK01007831    MBW41152.1    DS232391    EDS40982.1    GGFJ01007759    MBW56900.1    ADMH02002105    ETN59006.1    GL888425    EGI61057.1    UFQT01000280    SSX22717.1    GGFK01007924    MBW41245.1    GEDC01005238    JAS32060.1    GGFJ01007758    MBW56899.1    JH431454    GEFH01003735    JAP64846.1    GANO01000716    JAB59155.1    AXCN02001469    AAAB01008987    EAA01785.3    APCN01000833    ATLV01018208    KE525224    KFB42798.1    GL439579    EFN67000.1    GFJQ02004112    JAW02858.1    GBHO01038100    GDHC01017509    JAG05504.1    JAQ01120.1    GDIQ01102512    GDIP01047873    JAL49214.1    JAM55842.1    GBRD01005757    JAG60064.1    IAAA01011635    LAA05532.1    GDIP01007354    JAM96361.1    GDIP01227050    JAI96351.1    GDIP01095616    JAM08099.1    GL732555    EFX78783.1    GDIQ01026772    JAN67965.1    GDIP01192904    JAJ30498.1    CAEY01000248    GDIP01050517    JAM53198.1    GEBQ01014679    JAT25298.1    GBHO01038101    GDHC01017188    JAG05503.1    JAQ01441.1    NCKU01004103    RWS06446.1    AXCM01001747    GECU01033427    GECU01032908    GECU01020467    GECU01018266    JAS74279.1    JAS74798.1    JAS87239.1    JAS89440.1   

Proteomes

UP000218220    UP000007151    UP000005204    UP000283053    UP000053240    UP000053268    + More
UP000192223    UP000235965    UP000027135    UP000215335    UP000002358    UP000008237    UP000007819    UP000242457    UP000053097    UP000053105    UP000036403    UP000279307    UP000076502    UP000075809    UP000005203    UP000008820    UP000078542    UP000078541    UP000079169    UP000009046    UP000069940    UP000249989    UP000092461    UP000078540    UP000069272    UP000075881    UP000002320    UP000000673    UP000007755    UP000075880    UP000075886    UP000075885    UP000075902    UP000075882    UP000007062    UP000075840    UP000075903    UP000030765    UP000000311    UP000076407    UP000075884    UP000076408    UP000000305    UP000075920    UP000015104    UP000075900    UP000285301    UP000075883   

PRIDE

H9JTP1   

Pfam

PF03152   UFD1        + More
PF01042   Ribonuc_L-PSP

Interpro

IPR042299   Ufd1-like_Nn        + More
IPR004854   Ufd1-like       
IPR035959   RutC-like_sf       
IPR006056   RidA       
IPR006175   YjgF/YER057c/UK114       

SUPFAM

SSF55298   SSF55298       

Gene 3D

2.40.40.50     3.30.1330.40    

ProteinModelPortal

A0A2A4K305   A0A2H1V4U7   A0A212FMJ2   H9JTP1   S4PSD6   A0A1E1WP70   + More
A0A3S2PKI1   A0A194R2Z9   A0A194Q1F6   A0A1W4WF51   A0A2J7PMF2   A0A067R875   A0A0C9RI63   J3JWH4   A0A232F3L0   K7IRD7   E2B893   J9K1H9   C4WSF6   A0A2A3E7J7   A0A026VW06   A0A0M8ZUU9   A0A0J7KGH1   J9K462   A0A0K8RER8   A0A3L8D5S9   A0A154PE11   A0A151WSS0   A0A088A4B3   Q16WZ2   A0A023EQA0   A0A195CB84   A0A195FQP1   A0A1S3DL21   E0VMM4   Q16WZ1   A0A1S4FLI4   A0A182G4B6   A0A1E1XD09   A0A310SI08   A0A023FJT4   A0A1L8DT77   T1E370   L7M0E6   A0A131YTQ6   G3MHI1   A0A023GIB4   A0A1B0GHH7   A0A195BXD7   A0A2M4AKE4   A0A1Q3FBW4   A0A224Z338   A0A2R5L842   A0A2M4AK94   A0A182FRK6   A0A182K4E4   B0X5P5   A0A2M4BUZ0   W5J4X4   F4WXI7   A0A336M2W5   A0A2M4AKC8   A0A1B6E2B3   A0A2M4BV17   T1IT12   A0A131XGQ6   A0A182JG89   U5EN67   A0A182QHR6   A0A182PTR9   A0A182TZQ0   A0A182L8T6   Q7PUB8   A0A182HKJ1   A0A182VL45   A0A084VXV4   E2AHS1   A0A1Z5L6N8   A0A182X9K8   A0A0A9WCH1   A0A0P5RSA7   A0A0K8T3H3   A0A2L2YBJ6   A0A0P6C3X7   A0A182NR77   A0A0P4ZER3   A0A182YBD9   A0A0P5WQJ1   E9GNJ9   A0A0N8EHB2   A0A182VVT3   A0A0P5AX32   T1KMP3   A0A182RNJ8   A0A0P5Z195   A0A1B6LNQ4   A0A0A9WG80   A0A3S3NUU7   A0A182LTH9   A0A1B6HJF9  

PDB

2YUJ     E-value=7.40777e-76,     Score=721

KEGG

101742110    K14016 ubiquitin fusion degradation protein 1 | (RefSeq) ubiquitin fusion degradation protein 1 homo

PATHWAY

04141    Protein processing in endoplasmic reticulum - Bombyx mori (domestic silkworm)

GO

GO:0006511   GO:0016192   GO:0005198   GO:0030130   GO:0030132   GO:0005488   GO:0005515   GO:0009258   GO:0016155   GO:0003824  

PANTHER

PTHR12555  

Length:

310

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.000980000000000001

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00539

outside

1  -  310

 

 

Pi

173.605862

Theta

164.180641

Tajima's D

0.378956

CLR

0.188283

CSRT

0.475226238688066

Interpretation

Uncertain