Gene

KWMTBOMO09745

Pre Gene Modal

BGIBMGA012902

Annotation

PREDICTED:_transport_and_Golgi_organization_protein_2_[Bombyx_mori]

Location

Bomo_Chr16(+):8656211-8661083      View in EpiBrowser

Full name

Transport and Golgi organization protein 2      

Location in the cell

Cytoplasmic   Reliability : 1.82 Nuclear   Reliability : 1.502

CDS

ATGTGTATATTATTCGTATACAATGGAAGCTATGATGCAGACAGTGACTACAGTCTGATAGTGGCAACAAATAGAGATGAATTTTATGATCGACCTTCTGCAGAACTTGCGCCTTGGAAAGACAATCCAAATATCATTGGAGGATTAGATTTAGAAGGGGGCTGTGAAGGAGGGACGTGGCTTGCTGTGTCTCCCCTCAGAAAGAAAATGGGAGTACTTTTGAATTTACCAAATACACCAAAGAAAAATGCAAAAAGCCGAGGTAAAATTGTAGCAGAATTTGTGAAAAGTAAAAATGAGGCTGCATCATATGTTCAAGAAATGAAATCTTATTTTGAAGAATGTAATAATTTCATTTTTGTAGCAATGGACTTTGGAAACACCACGCCAGTCATAAATAGCTTCACGAATGTCACAAACTCAATAACAACACATACAGATCCTTGTTTGGGTTTCGGAAATAGTTTACCCGATATGCCATTGAAAAAAGTTGAAGCCGGCCTTACTAAAATGCATGATATTTGTAAGGGACTCAATAAAATTTCTATGAAAAGCAAACTCTTAGAAGAATTGACTGCACTCTTGAAGTGTAATGAAAGGCATCTACCTGACGCCCAACTACAAGAACGTAGGCCTAATTTATATGAAGAATTAAGTTCTATATTTGTTTGTGTACCTGAAGAAAGATATGGAACGAGGGCGCAAACTATATTGCTTCTCACGAAAACTGGTCATTTAGAAGTACACGAAATATCCATGAAATCACCAATTGATAAAATAGAACCCAAGTGGGAAAAACATAAATACCAATTTGACCTGTGA

Protein

MCILFVYNGSYDADSDYSLIVATNRDEFYDRPSAELAPWKDNPNIIGGLDLEGGCEGGTWLAVSPLRKKMGVLLNLPNTPKKNAKSRGKIVAEFVKSKNEAASYVQEMKSYFEECNNFIFVAMDFGNTTPVINSFTNVTNSITTHTDPCLGFGNSLPDMPLKKVEAGLTKMHDICKGLNKISMKSKLLEELTALLKCNERHLPDAQLQERRPNLYEELSSIFVCVPEERYGTRAQTILLLTKTGHLEVHEISMKSPIDKIEPKWEKHKYQFDL

Description

May play a role in Golgi organization.

Similarity

Belongs to the Tango2 family.

Keywords

Alternative splicing   Complete proteome   Cytoplasm   Golgi apparatus   Reference proteome  

Feature

chain  Transport and Golgi organization protein 2
splice variant  In isoform 2.

Uniprot

H9JTP0   A0A2A4K4N7   A0A2A4K2Y7   A0A212FMF3   A0A3S2M8Q7   A0A194Q5Y7   + More
A0A2H1VTT3   A0A2W1C104   A0A0L7L366   A0A194R281   A0A2Z5UIL8   A0A1I8NS59   U5ETR2   A0A1I8N4S6   A0A067R2Z1   D2A5G9   A0A182SVA3   A0A0J7NAU1   A0A1Y1MF26   A0A1Q3FHE6   A0A1S3JXG9   A0A182K672   A0A182RNB4   A0A182MBA0   W8AQE4   A0A0M5JDV2   Q16NI8   A0A182VYK0   A0A1L8DW97   A0A182P6N0   A0A154PJF6   E2AQB6   K7ITV2   A0A182UM18   W5JFZ7   A0A182WRR0   A0A182FPG7   A0A232F0N0   A0A1I8NS63   A0A1L8DWA9   A0A0K8WEX5   Q7QD53   A0A182TS50   B4M1B8   E0VH46   A0A026WDA6   A0A182LG08   A0A182HU18   A0A0R3P290   A0A182Q2I1   J9JTQ4   A0A182XWC6   A0A3B0KDX8   A0A1Z5KWY8   A0A084WP18   A0A2A3E9K0   A0A147BL27   A0A224YDW3   T1J2R1   A0A131YMH6   A0A0N7ZDD6   A0A443SGC0   B4JL84   V5I119   A0A0Q5TKS2   A0A0P9C159   N6UJV1   A0A0R1EAM1   M9PEI3   Q9VYA8   A0A023FJD9   B4L3C0   G3MQ42   A0A023GHH1   A0A182NDW9   B7PW18   A0A182JE38   A0A1W4VH83   A0A131XQA7   V4ACJ8   A0A1E1X7P0   B4NDC7   A0A2S2R1D5   K1R1M6   T1K1C7   A0A0L7RFK1   A0A087TNF6   L7MLR4   Q9U1Q8   A0A401SE81   K6YZG2   E3N0I8   A0A260ZS46   U3I7K4   A0A151NS40  

Pubmed

19121390    22118469    26354079    28756777    26227816    25315136    + More
24845553    18362917    19820115    28004739    24495485    17510324    20798317    20075255    20920257    23761445    28648823    12364791    14747013    17210077    17994087    20566863    24508170    20966253    15632085    25244985    28528879    24438588    29652888    28797301    26830274    25765539    23537049    17550304    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    12537569    16452979    22216098    28049606    23254933    28503490    22992520    25576852    9851916    30297745    25009843    23749191    22293439   

EMBL

BABH01003440    NWSH01000188    PCG78620.1    PCG78621.1    AGBW02007651    OWR54913.1    + More
RSAL01000008    RVE54023.1    KQ459582    KPI98820.1    ODYU01004373    SOQ44188.1    KZ149898    PZC78646.1    JTDY01003207    KOB69948.1    KQ460878    KPJ11624.1    AP017474    BBB06702.1    GANO01001788    JAB58083.1    KK853042    KDR12151.1    KQ971345    EFA05078.1    LBMM01007445    KMQ89725.1    GEZM01037814    JAV81917.1    GFDL01008081    JAV26964.1    AXCM01005292    GAMC01018273    JAB88282.1    CP012528    ALC49494.1    CH477823    EAT35904.1    EAT35905.1    EAT35906.1    GFDF01003380    JAV10704.1    KQ434924    KZC11604.1    GL441721    EFN64374.1    ADMH02001267    ETN63297.1    NNAY01001370    OXU24211.1    GFDF01003381    JAV10703.1    GDHF01002924    JAI49390.1    AAAB01008859    EAA07544.4    CH940651    EDW65472.1    DS235158    EEB12702.1    KK107260    EZA54060.1    APCN01000599    CH379066    KRT07320.1    AXCN02001589    ABLF02006773    OUUW01000011    SPP86500.1    GFJQ02007425    JAV99544.1    ATLV01024815    KE525361    KFB51962.1    KZ288327    PBC27962.1    GEGO01003897    JAR91507.1    GFPF01004752    MAA15898.1    JH431806    GEDV01008772    JAP79785.1    GDRN01043973    JAI66952.1    NCKV01002656    RWS26559.1    CH916370    EDW00337.1    GANP01003495    JAB80973.1    CH954180    KQS30378.1    CH902640    KPU77355.1    APGK01021186    KB740293    KB631672    ENN80941.1    ERL85268.1    CM000162    KRK06239.1    AE014298    AGB95367.1    AY069312    BT089002    GBBK01003203    JAC21279.1    CH933810    EDW07048.1    JO843993    AEO35610.1    GBBM01002007    JAC33411.1    ABJB010013628    ABJB010345996    ABJB010692915    ABJB010915330    ABJB011022104    ABJB011129956    DS804579    EEC10790.1    GEFH01000206    JAP68375.1    KB200406    ESP01734.1    GFAC01003903    JAT95285.1    CH964239    EDW82836.2    GGMS01014593    MBY83796.1    JH816018    EKC35040.1    CAEY01001351    KQ414599    KOC69757.1    KK116039    KFM66645.1    GACK01000242    JAA64792.1    BX284605    CAB60443.1    BEZZ01000216    GCC28717.1    BAEP01000023    GAC23557.1    DS268505    EFP13367.1    NMWX01000050    OZF88550.1    ADON01104759    ADON01104760    AKHW03002185    KYO39520.1   

Proteomes

UP000005204    UP000218220    UP000007151    UP000283053    UP000053268    UP000037510    + More
UP000053240    UP000095300    UP000095301    UP000027135    UP000007266    UP000075901    UP000036403    UP000085678    UP000075881    UP000075900    UP000075883    UP000092553    UP000008820    UP000075920    UP000075885    UP000076502    UP000000311    UP000002358    UP000075903    UP000000673    UP000076407    UP000069272    UP000215335    UP000007062    UP000075902    UP000008792    UP000009046    UP000053097    UP000075882    UP000075840    UP000001819    UP000075886    UP000007819    UP000076408    UP000268350    UP000030765    UP000242457    UP000288716    UP000001070    UP000008711    UP000007801    UP000019118    UP000030742    UP000002282    UP000000803    UP000009192    UP000075884    UP000001555    UP000075880    UP000192221    UP000030746    UP000007798    UP000005408    UP000015104    UP000053825    UP000054359    UP000001940    UP000287033    UP000006263    UP000008281    UP000216624    UP000016666    UP000050525   

PRIDE

H9JTP0    Q9VYA8    G3MQ42   

Pfam

PF05742   TANGO2        + More
PF08016   PKD_channel

Interpro

IPR008551   TANGO2        + More
IPR013122   PKD1_2_channel       
IPR013087   Znf_C2H2_type       
IPR036236   Znf_C2H2_sf       

SUPFAM

SSF57667   SSF57667       

ProteinModelPortal

H9JTP0   A0A2A4K4N7   A0A2A4K2Y7   A0A212FMF3   A0A3S2M8Q7   A0A194Q5Y7   + More
A0A2H1VTT3   A0A2W1C104   A0A0L7L366   A0A194R281   A0A2Z5UIL8   A0A1I8NS59   U5ETR2   A0A1I8N4S6   A0A067R2Z1   D2A5G9   A0A182SVA3   A0A0J7NAU1   A0A1Y1MF26   A0A1Q3FHE6   A0A1S3JXG9   A0A182K672   A0A182RNB4   A0A182MBA0   W8AQE4   A0A0M5JDV2   Q16NI8   A0A182VYK0   A0A1L8DW97   A0A182P6N0   A0A154PJF6   E2AQB6   K7ITV2   A0A182UM18   W5JFZ7   A0A182WRR0   A0A182FPG7   A0A232F0N0   A0A1I8NS63   A0A1L8DWA9   A0A0K8WEX5   Q7QD53   A0A182TS50   B4M1B8   E0VH46   A0A026WDA6   A0A182LG08   A0A182HU18   A0A0R3P290   A0A182Q2I1   J9JTQ4   A0A182XWC6   A0A3B0KDX8   A0A1Z5KWY8   A0A084WP18   A0A2A3E9K0   A0A147BL27   A0A224YDW3   T1J2R1   A0A131YMH6   A0A0N7ZDD6   A0A443SGC0   B4JL84   V5I119   A0A0Q5TKS2   A0A0P9C159   N6UJV1   A0A0R1EAM1   M9PEI3   Q9VYA8   A0A023FJD9   B4L3C0   G3MQ42   A0A023GHH1   A0A182NDW9   B7PW18   A0A182JE38   A0A1W4VH83   A0A131XQA7   V4ACJ8   A0A1E1X7P0   B4NDC7   A0A2S2R1D5   K1R1M6   T1K1C7   A0A0L7RFK1   A0A087TNF6   L7MLR4   Q9U1Q8   A0A401SE81   K6YZG2   E3N0I8   A0A260ZS46   U3I7K4   A0A151NS40  

KEGG

101742264    no KO assigned | (RefSeq) transport and Golgi organization protein 2

GO

GO:0005794   GO:0009306   GO:0007030   GO:0005829   GO:0003676  

PANTHER

PTHR17985  

Subcellular location

Cytoplasm  
Golgi apparatus  

Length:

273

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00693

Exp number, first 60 AAs:

0.00033

Total prob of N-in:

0.01714

outside

1  -  273

 

 

Pi

193.798441

Theta

168.268259

Tajima's D

0.743489

CLR

0.658177

CSRT

0.587820608969552

Interpretation

Uncertain