Gene

KWMTBOMO09743

Pre Gene Modal

BGIBMGA012901

Annotation

FancJ-like_protein_[Bombyx_mori]

Location

Bomo_Chr16(+):8621421-8641760      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 2.41

CDS

ATGGGTACACACGGAGCTACCAGCATAGATGAAGAACAATCCCAAACCCGAAAGAAATACAAAGCTGAGAACATTACCAATATATCTGACTCTCCACGGTCTCCGTCTAACTCACAGAACCCGCCGAAACATGAACGGGTTCCAGTCGTGTACTACGGCACCAGAACCCACAAACAGCTACAGCAGGTGATCAAAGAGTTCAAACGCACGGTCTACTGCAAGGAGATACGTATGTCGATACTGGCCGGCAGAGACCGGACCTGTCTAATGCCATTCGATCGTAAAATCTGGAAAACCAAGGACGATATGTGCGCTGAGTGCATCAAAACCAAATCAAGTCTGATGAATACGTCATCACCGCAAACGTCAAGCTGCAAATTCTACGACAACCGAATGTCGTTGACGCACAGCAACTTGCCCCCGGCCTTCGACATCGAGGACTTGGTCGAAGCCGGAGCGAAACTGAAGGCCTGCCCTTACTTCGCTGCCAAGAGCATGGCCGCAAAAGCAAAAATCATCTTCTGTCCTTACAACTATCTGATCAACCCTTTCATTAGGGAGCGGATGAGGATCAATTTAGCAGACAACATAGTCGTTATAGACGAAGGGCACAACATCGAAGACATCTGCAGAGACGAGGCCACCTGCACCATCGAGAGGAGACGGATATCTGAAGCTGTTGATCAACTGCAGTACGCCAAGAGGTACGTTAAGATGGGCCAGGATGAGGCTGCAAGAGGGGAAACAATAGATTTTTTCATCAAGACATTACAAATATGGGATAAGTGTCTAATAGAACAATCCGATCGCGTATCGCGCGAGAACACCGACATGTGGAACATGAACGAGTTCATGGCTATGCTAAATGAAAATGGCATCGGACAAAACAATTATCATAATTTCAATTTTCATTTATCGAAGCTGTTACGTATGCAAGATGATTTGTACGGTGTGGGACAACACACGATCGCCTTGTTGGAAACAATGGACTCCGCTCTCGGGTACCTTTTCAAGGACGAATGTAAACACGCCGAAGACTTCGTGCCGATGTTGCTGAAGGGTGACGACTCGCGCGCGCTCTATCGGCGACGGTCGTATACCGGCGAGTTCAAAGGTGCGAACATATCGATACGTCTTCTATGCATGAGTCCGGCGGTGCTGTTCGAGGGTCTGACGAAGGCTAGATCTATAATACTGGCCTCCGGTACACTGTCGCCCGTGGGCAGCATGAAGCACGAGCTCGGCGCCGAGTTCAACGTGTCGTGTTTGAACCACGTCATCTCTAGAGAACGGGTATGGATAGGAACGTTAAGAAACTGCGAGAGCTCGGAACAATTGAAATGTACGAAGGATAATATGGAGAAGAAACAAGTACAGGATTCCATAGGGAAGGCTATATTGAGGGTGTGTGACGTCACGCCCCATGGAGTGCTGTGCTTTCATTCCTCGTACACATCCATGAGGTTGCTACATCAAAGATGGCAACAAACTGGCTTGTGGGACAAATTGAATAGCCTAAAATATATATTTAAGGAGAGCGACAATACGACTGATCATGACGAAATTATGAAGGAGTACTACAGCGCCGCGGAGGTGGATCGAGGCGCGATCCTGTTCGCCGTGTACAGGGGGAAGGTCTCCGAGGGCATGGACTTCAGGGACCGGCAAGCCAGGGCCGTTGTGACGATCGGCGTGCCCTTCCCAACGATCGGAGACAAGATGGTCACGGAGAAAATGAAATACAACGACAAGCATTCGAATGGGAAGAAGTTAATGCGCGGCTGGGACTGGTACAACGTGCAAGCCTTCAGAGCCATGAACCAAGCCATAGGACGTTGCGTGAGGCACCTCAACGACTGGGGCGCCGTTCTGATGATCGACGAGAGAATCGCAGAACAAAGGAATCTTGAATATCTATCTAAATGGGTGCGAGACTTCCTCGGAAACAACCATTTTACTTTCGATGAATTAATGCATAGACAAAACAGCCTCACAAGATTTATGGAGAACATGAGCAAAGAATAA

Protein

MGTHGATSIDEEQSQTRKKYKAENITNISDSPRSPSNSQNPPKHERVPVVYYGTRTHKQLQQVIKEFKRTVYCKEIRMSILAGRDRTCLMPFDRKIWKTKDDMCAECIKTKSSLMNTSSPQTSSCKFYDNRMSLTHSNLPPAFDIEDLVEAGAKLKACPYFAAKSMAAKAKIIFCPYNYLINPFIRERMRINLADNIVVIDEGHNIEDICRDEATCTIERRRISEAVDQLQYAKRYVKMGQDEAARGETIDFFIKTLQIWDKCLIEQSDRVSRENTDMWNMNEFMAMLNENGIGQNNYHNFNFHLSKLLRMQDDLYGVGQHTIALLETMDSALGYLFKDECKHAEDFVPMLLKGDDSRALYRRRSYTGEFKGANISIRLLCMSPAVLFEGLTKARSIILASGTLSPVGSMKHELGAEFNVSCLNHVISRERVWIGTLRNCESSEQLKCTKDNMEKKQVQDSIGKAILRVCDVTPHGVLCFHSSYTSMRLLHQRWQQTGLWDKLNSLKYIFKESDNTTDHDEIMKEYYSAAEVDRGAILFAVYRGKVSEGMDFRDRQARAVVTIGVPFPTIGDKMVTEKMKYNDKHSNGKKLMRGWDWYNVQAFRAMNQAIGRCVRHLNDWGAVLMIDERIAEQRNLEYLSKWVRDFLGNNHFTFDELMHRQNSLTRFMENMSKE

Uniprot

A9EEZ8   A0A194PZT2   A0A437BUI9   A0A2W1BYG9   A0A2H1VVE1   A0A212FME2   + More
A0A3Q1IQZ1   H2T3N5   A0A293LE89   A0A3P9I1H1   A0A3P9I1E8   A0A3P9JFQ7   A0A3B4VLU2   A0A3B3H8F0   H2MIU7   A0A3B3HB80   A0A3B4ZN16   A0A3B3HKH5   A0A3B3H805   A0A3P9M0B9   A0A3P8XN58   A0A3M6UJH1   I3JWB2   A0A3B4HCA1   A0A3Q2V3Q1   A0A151WPQ7   H3DA69   F6ULH9   A0A3P9AWL3   A0A3P8QPV4   A0A3B3BW47   A0A3Q3L5G2   A0A146ZNM1   A0A3Q2Q5U0   A0A146VAX1   A0A1S3NRR4   A0A3B3VGS8   A0A3B3BVC5   E2AJR2   A0A3P9PLY0   A0A3B3DDW3   A0A087YEW9   A0A3P9PLJ7   V4AHF8   H0ZBR6   A0A3Q2Q5D1   A0A093R258   A0A1X7UE18   A0A3P8S870   A0A3Q2NMX5   A0A0P7UJ65   A0A0A0ABS1   A0A2R8QEM7   A0A091HX30   A0A091M9K4   A0A0Q3PY07   B7ZDD5   A0A093CZN1   A0A094LMH0   A0A2R8QLG8   A0A1A7XTS7   A0A2R8Q596   A0A3B5LA20   A0A2R8QLM4   A0A2R8QCP4   A0A2R8S0B7   A8QLH7   A0A3Q3K0C3   A0A2G8KDW1   A0A3B5RC02   A0A3Q2XFD4   A0A091UHS8   A0A3Q1C674   M3ZU62   A0A1L8HG08   A0A093KLT1   A0A2I0LYG7   K1QY39   A0A1V4K1Y6   A0A3Q0RSW1   G3I6L7   A0A2Y9RA33   A0A091L764   A0A099ZPJ6   A0A2U9B3Y3   A0A2D0SWT7   A0A091IUC2   G1N6L5   A0A2I4D943   A0A1W4ZSQ4   A0A3B4DJZ9   A0A091UGH3   A0A091SND1   A0A3Q2ZJI7   A0A093ETD5   A0A091QBS8   A0A3Q1ER48   A0A3Q1H996  

Pubmed

26354079    28756777    22118469    21551351    17554307    25069045    + More
30382153    25186727    15496914    20431018    29451363    20798317    23254933    20360741    23594743    29023486    23542700    27762356    23371554    22992520    21804562    20838655   

EMBL

AB369600    BAF94023.1    KQ459582    KPI98837.1    RSAL01000008    RVE54025.1    + More
KZ149898    PZC78644.1    ODYU01004372    SOQ44184.1    AGBW02007651    OWR54915.1    GFWV01002313    MAA27043.1    RCHS01001413    RMX53830.1    AERX01031533    AERX01031534    AERX01031535    AERX01031536    AERX01031537    KQ982860    KYQ49788.1    AAMC01027091    AAMC01027092    AAMC01027093    AAMC01027094    AAMC01027095    AAMC01027096    AAMC01027097    AAMC01027098    GCES01018410    JAR67913.1    GCES01071882    JAR14441.1    GL440062    EFN66346.1    AYCK01010880    AYCK01010881    AYCK01010882    AYCK01010883    KB201794    ESO94630.1    ABQF01026546    ABQF01026547    KL444839    KFW95163.1    JARO02001813    KPP74356.1    KL871238    KGL91372.1    AL954187    AL954322    BX005270    CT573367    KL217847    KFO99724.1    KK523406    KFP67239.1    LMAW01002498    KQK80948.1    KL467871    KFV17727.1    KL360316    KFZ64989.1    HADW01020033    SBP21433.1    AL954326    EF088194    ABO27623.1    MRZV01000662    PIK46155.1    KK436363    KFQ90339.1    CM004468    OCT94971.1    KK588553    KFV98625.1    AKCR02000061    PKK22472.1    JH817109    EKC26471.1    LSYS01005108    OPJ78490.1    JH001376    EGV98907.1    KL306641    KFP52284.1    KL895544    KGL82705.1    CP026245    AWO98448.1    KK501002    KFP11907.1    KK450974    KFQ73583.1    KK477535    KFQ59455.1    KK371737    KFV43893.1    KK692032    KFQ22059.1   

Proteomes

UP000053268    UP000283053    UP000007151    UP000265040    UP000005226    UP000265200    + More
UP000261420    UP000001038    UP000261400    UP000265180    UP000265140    UP000275408    UP000005207    UP000261460    UP000264840    UP000075809    UP000007303    UP000008143    UP000265160    UP000265100    UP000261560    UP000261640    UP000265000    UP000087266    UP000261500    UP000000311    UP000242638    UP000028760    UP000030746    UP000007754    UP000007879    UP000265080    UP000034805    UP000053858    UP000000437    UP000054308    UP000051836    UP000261380    UP000261600    UP000230750    UP000002852    UP000264820    UP000257160    UP000186698    UP000053872    UP000005408    UP000190648    UP000261340    UP000001075    UP000248480    UP000053641    UP000246464    UP000221080    UP000053119    UP000001645    UP000192220    UP000192224    UP000261440    UP000264800    UP000257200   

PRIDE

A9EEZ8    G3I6L7   

Pfam

PF06733   DEAD_2        + More
PF13307   Helicase_C_2
PF00270   DEAD

Interpro

IPR027417   P-loop_NTPase        + More
IPR006554   Helicase-like_DEXD_c2       
IPR014013   Helic_SF1/SF2_ATP-bd_DinG/Rad3       
IPR010614   DEAD_2       
IPR013020   Rad3/Chl1-like       
IPR006555   ATP-dep_Helicase_C       
IPR002464   DNA/RNA_helicase_DEAH_CS       
IPR011545   DEAD/DEAH_box_helicase_dom       
IPR014001   Helicase_ATP-bd       

SUPFAM

SSF52540   SSF52540       

ProteinModelPortal

A9EEZ8   A0A194PZT2   A0A437BUI9   A0A2W1BYG9   A0A2H1VVE1   A0A212FME2   + More
A0A3Q1IQZ1   H2T3N5   A0A293LE89   A0A3P9I1H1   A0A3P9I1E8   A0A3P9JFQ7   A0A3B4VLU2   A0A3B3H8F0   H2MIU7   A0A3B3HB80   A0A3B4ZN16   A0A3B3HKH5   A0A3B3H805   A0A3P9M0B9   A0A3P8XN58   A0A3M6UJH1   I3JWB2   A0A3B4HCA1   A0A3Q2V3Q1   A0A151WPQ7   H3DA69   F6ULH9   A0A3P9AWL3   A0A3P8QPV4   A0A3B3BW47   A0A3Q3L5G2   A0A146ZNM1   A0A3Q2Q5U0   A0A146VAX1   A0A1S3NRR4   A0A3B3VGS8   A0A3B3BVC5   E2AJR2   A0A3P9PLY0   A0A3B3DDW3   A0A087YEW9   A0A3P9PLJ7   V4AHF8   H0ZBR6   A0A3Q2Q5D1   A0A093R258   A0A1X7UE18   A0A3P8S870   A0A3Q2NMX5   A0A0P7UJ65   A0A0A0ABS1   A0A2R8QEM7   A0A091HX30   A0A091M9K4   A0A0Q3PY07   B7ZDD5   A0A093CZN1   A0A094LMH0   A0A2R8QLG8   A0A1A7XTS7   A0A2R8Q596   A0A3B5LA20   A0A2R8QLM4   A0A2R8QCP4   A0A2R8S0B7   A8QLH7   A0A3Q3K0C3   A0A2G8KDW1   A0A3B5RC02   A0A3Q2XFD4   A0A091UHS8   A0A3Q1C674   M3ZU62   A0A1L8HG08   A0A093KLT1   A0A2I0LYG7   K1QY39   A0A1V4K1Y6   A0A3Q0RSW1   G3I6L7   A0A2Y9RA33   A0A091L764   A0A099ZPJ6   A0A2U9B3Y3   A0A2D0SWT7   A0A091IUC2   G1N6L5   A0A2I4D943   A0A1W4ZSQ4   A0A3B4DJZ9   A0A091UGH3   A0A091SND1   A0A3Q2ZJI7   A0A093ETD5   A0A091QBS8   A0A3Q1ER48   A0A3Q1H996  

PDB

6NMI     E-value=1.28226e-24,     Score=283

KEGG

100126867    K15362 fanconi anemia group J protein [EC:3.6.4.12] | (RefSeq) FancJ-like protein

PATHWAY

03440    Homologous recombination - Bombyx mori (domestic silkworm)
03460    Fanconi anemia pathway - Bombyx mori (domestic silkworm)

GO

GO:0005634   GO:0006139   GO:0003677   GO:0004003   GO:0005524   GO:0004386   GO:0006289   GO:1990918   GO:0016021   GO:0007284   GO:0072520   GO:0051026   GO:0010705   GO:0006357   GO:0007286   GO:0031965   GO:0005737   GO:0016818   GO:0003676   GO:0008026   GO:0009258   GO:0016155   GO:0003824  

Subcellular location

Nucleus  

Length:

674

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.01926

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00099

outside

1  -  674

 

 

Pi

271.72534

Theta

172.254687

Tajima's D

1.59459

CLR

0.516252

CSRT

0.809009549522524

Interpretation

Uncertain