Gene

KWMTBOMO09730  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA012893

Annotation

trafficking_protein_particle_complex_subunit_3_[Bombyx_mori]

Location

Bomo_Chr16(+):8195402-8197916      View in EpiBrowser

Full name

Trafficking protein particle complex subunit      

Location in the cell

Cytoplasmic   Reliability : 2.063 Nuclear   Reliability : 1.374

CDS

ATGTCTCGGCAAACTTCTAGATTGGACGCCAAGAAAGTTAATTCCGAGCTCCTAACTCTTACATATGGGGCTTTAGTGTCTCAAATGCTGAAAGAAACAGAAAACACTGAAGATGTAAACAAACATCTTGAGAGAATCGGATACAACATGGGCGTTAGACTGATAGAGGACTTCCTGGCCCGGACTACGTCTACTCGCTGCTTAGAAATGAGAGAGACTGCTGATAAAATACAGCAGGCCTTCAAACTATACCTTAGCATGCAGCCGACAGTAACAAGTTGGAGTAGTGCCGGAGATGAGTTTTCGCTTGTTTGGGACCATTGTCCACTCAGTGAATGGGTGGAGATGCCAAGTAATAACGGCCTGAAATATTGCGCTTTGATTCCCGGTGCAATCAGAGGTGCTCTACAGATGGTACAACTAGATGTACAATGCTGGTTTGTGCAGGATCAGTTGAAAGGTGATCCCGTGACAGAATTAAGAGTGAAATACTTGAAGAGATTAGAAGATGCCGTACCAGCCGGTGAAGATTAG

Protein

MSRQTSRLDAKKVNSELLTLTYGALVSQMLKETENTEDVNKHLERIGYNMGVRLIEDFLARTTSTRCLEMRETADKIQQAFKLYLSMQPTVTSWSSAGDEFSLVWDHCPLSEWVEMPSNNGLKYCALIPGAIRGALQMVQLDVQCWFVQDQLKGDPVTELRVKYLKRLEDAVPAGED

Description

May play a role in vesicular transport from endoplasmic reticulum to Golgi.

Subunit

Homodimer.

Similarity

Belongs to the TRAPP small subunits family. BET3 subfamily.

Uniprot

Q2F629   A0A2W1BUB7   A0A2A4JDZ2   S4PF87   A0A1E1WK54   A0A212FMG2   + More
A0A2H1VAQ3   A0A437B217   A0A194Q616   A0A194R2X6   H9JTN1   A0A1A9XIL9   B4MMU4   B4HKQ7   B3NCG3   B4QN65   Q9VSY8   B4LBR9   B4L994   A0A1W4U922   A0A0K8TTF7   B4PEW7   W8B247   A0A1I8NH44   A0A0K8UQ06   A0A3B0J5C4   B5DR31   B4H1Y5   A0A034VLG5   B3MA83   A0A1I8P740   A0A1Q3G2Y4   A0A1W7R891   Q0IEU7   A0A1S4FI35   U5EM23   A0A240PJY1   A0A1Y9HEN7   A0A1Y9IWG0   A0A336M1G9   A0A182M545   A0A1Y9J0E9   A0A1Y9H346   A0A1Y9HAS2   A0A1Y9IRY0   A0A2C9GTR9   A0A240PKB8   A0A1Y9IMI4   A0A1Y9GLV7   F5HIY1   A0A2K6VB53   A0A2M3ZAE2   A0A2M4AW20   A0A2M4C137   A0A1A9VN08   A0A1L8DVS3   B4J1I9   A0A182SDP7   A0A240PLN9   A0A2H8TXX8   C4WXG1   A0A1B0FAP2   V5GBT0   A0A026VUJ8   A0A1A9WRA1   B0XJC5   A0A1V9XYF0   D6WJE6   V9I956   A0A2P8Z8X1   B0WUG6   A0A0C9RTJ4   E0VBE5   A0A088AAJ1   A0A1Y1KY87   K7IQ15   A0A182HAW6   R4FPN5   A0A224XLU8   A0A0V0GBH1   A0A069DNS4   A0A158NTD7   V9IBF4   A0A0L0CIN0   A0A154PE55   A0A1B6GSY3   A0A1B6JGC9   A0A1B6M0F9   E9H4K9   A0A1W4X137   A0A0M4EDM9   N6U0W4   A0A0N8E0Z9   A0A0P6H0X2   A0A023F9H1   A0A2A3E1U3   A0A1S3CUN5   A0A2M4AWL1   A0A0P4X3L0   A0A182FDE7  

Pubmed

28756777    23622113    22118469    26354079    19121390    17994087    + More
22936249    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    26369729    17550304    24495485    25315136    15632085    25348373    17510324    20966253    12364791    14747013    17210077    20920257    24508170    30249741    28327890    18362917    19820115    29403074    20566863    28004739    20075255    26483478    26334808    21347285    26108605    21292972    23537049    25474469   

EMBL

DQ311243    ABD36188.1    KZ149898    PZC78638.1    NWSH01001926    PCG69650.1    + More
GAIX01006715    JAA85845.1    GDQN01003746    JAT87308.1    AGBW02007651    OWR54921.1    ODYU01001533    SOQ37881.1    RSAL01000205    RVE44354.1    KQ459582    KPI98850.1    KQ460878    KPJ11595.1    BABH01003477    CH963847    EDW73500.1    CH480815    EDW40860.1    CH954178    EDV51193.2    CM000363    CM002912    EDX09848.1    KMY98649.1    AE014296    BT015980    AAF50270.3    AAV36865.1    CH940647    EDW68696.2    CH933816    EDW17269.2    GDAI01000383    JAI17220.1    CM000159    EDW93022.2    GAMC01015457    JAB91098.1    GDHF01023555    JAI28759.1    OUUW01000002    SPP77154.1    CH379070    EDY74027.2    CH479203    EDW30337.1    GAKP01016310    GAKP01016307    GAKP01016305    GAKP01016301    JAC42645.1    CH902618    EDV39097.2    GFDL01000883    JAV34162.1    GEHC01000310    JAV47335.1    CH477478    EAT40254.1    GANO01001181    JAB58690.1    UFQT01000097    SSX19808.1    AXCM01000608    AXCN02000388    APCN01000197    AAAB01008807    EGK96242.1    GGFM01004753    MBW25504.1    GGFK01011668    MBW44989.1    GGFJ01009871    MBW59012.1    GFDF01003565    JAV10519.1    CH916366    EDV95880.1    GFXV01007348    MBW19153.1    ABLF02012718    AK342621    BAH72581.1    CCAG010020395    GALX01006997    JAB61469.1    KK107847    QOIP01000005    EZA47473.1    RLU22554.1    DS233480    EDS30162.1    MNPL01002098    OQR78547.1    KQ971342    EFA03885.1    JR037183    AEY57628.1    PYGN01000143    PSN52939.1    DS232104    EDS34945.1    GBYB01012065    JAG81832.1    DS235028    EEB10701.1    GEZM01070645    GEZM01070644    GEZM01070643    GEZM01070642    GEZM01070641    GEZM01070640    JAV66359.1    JXUM01031571    KQ560926    KXJ80318.1    ACPB03000027    GAHY01000789    JAA76721.1    GFTR01002960    JAW13466.1    GECL01000870    JAP05254.1    GBGD01003171    JAC85718.1    ADTU01025847    JR037184    AEY57629.1    JRES01000341    KNC32101.1    KQ434870    KZC09558.1    GECZ01004316    JAS65453.1    GECU01009436    JAS98270.1    GEBQ01014866    GEBQ01010576    GEBQ01009715    JAT25111.1    JAT29401.1    JAT30262.1    GL732592    EFX73158.1    CP012525    ALC43734.1    APGK01043984    KB741019    KB631645    ENN75165.1    ERL84969.1    GDIQ01072476    JAN22261.1    GDIQ01104857    GDIQ01026130    LRGB01000146    JAN68607.1    KZS20582.1    GBBI01000682    JAC18030.1    KZ288444    PBC25667.1    GGFK01011866    MBW45187.1    GDIP01249802    JAI73599.1   

Proteomes

UP000218220    UP000007151    UP000283053    UP000053268    UP000053240    UP000005204    + More
UP000092443    UP000007798    UP000001292    UP000008711    UP000000304    UP000000803    UP000008792    UP000009192    UP000192221    UP000002282    UP000095301    UP000268350    UP000001819    UP000008744    UP000007801    UP000095300    UP000008820    UP000075880    UP000075900    UP000075920    UP000075883    UP000076407    UP000075884    UP000075886    UP000075903    UP000075882    UP000075885    UP000075902    UP000075840    UP000007062    UP000078200    UP000001070    UP000075901    UP000075881    UP000007819    UP000092444    UP000053097    UP000279307    UP000091820    UP000002320    UP000192247    UP000007266    UP000245037    UP000009046    UP000005203    UP000002358    UP000069940    UP000249989    UP000015103    UP000005205    UP000037069    UP000076502    UP000000305    UP000192223    UP000092553    UP000019118    UP000030742    UP000076858    UP000242457    UP000079169    UP000069272   

PRIDE

Q2F629    H9JTN1    Q9VSY8   

Pfam

PF04051   TRAPP        + More
PF02045   CBFB_NFYA

Interpro

IPR016721   Bet3        + More
IPR024096   NO_sig/Golgi_transp_ligand-bd       
IPR007194   TRAPP_component       
IPR001289   NFYA       

SUPFAM

SSF111126   SSF111126       

CDD

cd14942  TRAPPC3_bet3

ProteinModelPortal

Q2F629   A0A2W1BUB7   A0A2A4JDZ2   S4PF87   A0A1E1WK54   A0A212FMG2   + More
A0A2H1VAQ3   A0A437B217   A0A194Q616   A0A194R2X6   H9JTN1   A0A1A9XIL9   B4MMU4   B4HKQ7   B3NCG3   B4QN65   Q9VSY8   B4LBR9   B4L994   A0A1W4U922   A0A0K8TTF7   B4PEW7   W8B247   A0A1I8NH44   A0A0K8UQ06   A0A3B0J5C4   B5DR31   B4H1Y5   A0A034VLG5   B3MA83   A0A1I8P740   A0A1Q3G2Y4   A0A1W7R891   Q0IEU7   A0A1S4FI35   U5EM23   A0A240PJY1   A0A1Y9HEN7   A0A1Y9IWG0   A0A336M1G9   A0A182M545   A0A1Y9J0E9   A0A1Y9H346   A0A1Y9HAS2   A0A1Y9IRY0   A0A2C9GTR9   A0A240PKB8   A0A1Y9IMI4   A0A1Y9GLV7   F5HIY1   A0A2K6VB53   A0A2M3ZAE2   A0A2M4AW20   A0A2M4C137   A0A1A9VN08   A0A1L8DVS3   B4J1I9   A0A182SDP7   A0A240PLN9   A0A2H8TXX8   C4WXG1   A0A1B0FAP2   V5GBT0   A0A026VUJ8   A0A1A9WRA1   B0XJC5   A0A1V9XYF0   D6WJE6   V9I956   A0A2P8Z8X1   B0WUG6   A0A0C9RTJ4   E0VBE5   A0A088AAJ1   A0A1Y1KY87   K7IQ15   A0A182HAW6   R4FPN5   A0A224XLU8   A0A0V0GBH1   A0A069DNS4   A0A158NTD7   V9IBF4   A0A0L0CIN0   A0A154PE55   A0A1B6GSY3   A0A1B6JGC9   A0A1B6M0F9   E9H4K9   A0A1W4X137   A0A0M4EDM9   N6U0W4   A0A0N8E0Z9   A0A0P6H0X2   A0A023F9H1   A0A2A3E1U3   A0A1S3CUN5   A0A2M4AWL1   A0A0P4X3L0   A0A182FDE7  

PDB

2J3W     E-value=1.01087e-55,     Score=544

KEGG

692860    K20302 trafficking protein particle complex subunit 3 | (RefSeq) trafficking protein particle comple

GO

GO:0048193   GO:0030008   GO:0005794   GO:0005783   GO:0033227   GO:0016192   GO:0005737   GO:0006888   GO:0006891   GO:0003700   GO:0005829   GO:0033106   GO:0008289   GO:0016788   GO:0046872   GO:0003723   GO:0006730   GO:0009258   GO:0016155   GO:0003824  

PANTHER

PTHR13048  

Subcellular location

  

Length:

177

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.0841099999999999

Exp number, first 60 AAs:

0.07612

Total prob of N-in:

0.26436

outside

1  -  177

 

 

Pi

370.118973

Theta

218.308211

Tajima's D

2.158406

CLR

0

CSRT

0.904904754762262

Interpretation

Uncertain