SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO09718  Validated by peptides from experiments
Pre Gene Modal
BGIBMGA012944
Annotation
fatty_acid_binding_protein_[Bombyx_mori]
Full name
Fatty acid-binding protein 1       + More
Fatty acid-binding protein 2      
Location in the cell
Cytoplasmic   Reliability : 3.406
 

Sequence

CDS
ATGTCTTTCTTGGGTAAAAAATACACATTCGATAGAGAAGAAAACTTCGATGGGTTCCTTAAGTTTGTCGGTCTCCCCGAAGACCAGATCCGGAAACTTTTGCAGTTCAAGCCTACAACTACATTGATCAAGGAAGGCGACAAATACAAGACCATCACCGTCGACAGCAACGGTACAAAGGAGACAGTTTTTGAGTCCGGTGTGCCTTTCGACGAAACCATCGATGGTGTATTGACGATAAAAACCACGTACACAGTTGATGGAAACACCGTAACTCATGTTGTAGAGAATCCCAATGGCACAGCAACATTCAAAAGGGAATACGGTGACACCGAACTAAAAGTTACTATCTCGGCCGATAAATGGGACGGCGTTGCCTATCGATACTACAAAGTTTAA
Protein
MSFLGKKYTFDREENFDGFLKFVGLPEDQIRKLLQFKPTTTLIKEGDKYKTITVDSNGTKETVFESGVPFDETIDGVLTIKTTYTVDGNTVTHVVENPNGTATFKREYGDTELKVTISADKWDGVAYRYYKV

Summary

Subunit
Monomer.
Similarity
Belongs to the calycin superfamily. Fatty-acid binding protein (FABP) family.
Keywords
Cytoplasm   Lipid-binding   Transport   3D-structure   Acetylation  
Feature
chain  Fatty acid-binding protein 1
EMBL
BABH01003501    DQ311357    AB262580    ABD36301.1    BAE96010.1    BABH01003497    + More
BABH01003494    M77754    ODYU01000112    SOQ34331.1    NWSH01004822    PCG64667.1    EU325558    ACB54948.1    KZ150128    PZC73091.1    PCG64669.1    EU325559    ACB54949.1    PZC73093.1    M77755    ODYU01005494    SOQ46401.1    PZC73089.1    PCG64668.1    SOQ46400.1    JF896323    AEH16743.1    PCG64671.1    SOQ46399.1    PCG64670.1    AGBW02007648    OWR55132.1    PZC73092.1    SOQ34332.1    PZC73090.1    KQ459582    KPI98869.1    PCG64666.1    SOQ46402.1    KQ460878    KPJ11576.1    RSAL01000205    RVE44355.1    DQ299942    ABC02870.1    OWR55131.1    KPI98973.1    KQ460635    KPJ13423.1    GDQN01005887    GDQN01000306    JAT85167.1    JAT90748.1    PZC73094.1    KPJ13424.1    AF074436    AAC25674.1    OWR55130.1    KPJ13422.1    KPI98972.1    GDQN01006476    JAT84578.1    DQ109670    DQ311348    DQ539018    EF112401    AB262579    AAZ82096.1    ABD36292.1    ABG20590.1    ABK97427.1    BAE96009.1    AB267808    BAF02663.1    U75307    AAC24317.1    GBRD01007489    JAG58332.1    EU325560    KZ149898    ACB54950.1    PZC78673.1    NWSH01003893    PCG65719.1    KQ461183    KPJ07543.1    KC127672    AGG56524.1    AK401407    BAM18029.1    KPI98807.1    GAIX01006016    JAA86544.1    LADI01004745    KPJ20600.1    AGBW02007650    OWR55117.1    AB180450    BAD26694.1    AK402706    BAM19328.1    LJIG01002210    KRT84730.1    MG992392    AXY94830.1    CH954181    EDV49508.1    KM507112    AKM28436.1    LUKN01003848    OAQ96856.1    AZHF01000004    OAA76109.1    OWR55129.1    AAZX01000617    AAZX01000618    KQ971345    KYB27002.1    GGFK01005717    MBW39038.1    KPI98838.1    GAMD01001196    JAB00395.1    KPJ11606.1    GGFM01000835    MBW21586.1    CM000160    EDW97700.1    GBYB01011169    JAG80936.1    ATLV01023157    KE525341    KFB48504.1    GGFL01004726    MBW68904.1    BT001880    AAN71654.1    KC966936    AHV85210.1    AE014297    BT001757    BT001835    KX532042    AAN13512.1    AAN71512.1    AAN71590.1    ANY27852.1    AAAB01008904    EGK97217.1    EGK97218.1    CH480815    EDW42595.1    ODYU01000601    SOQ35676.1    CP023324    ATY62148.1    JH126405    EGX88872.1    GEZM01006856    JAV95618.1    NNAY01003987    OXU18530.1    LJIJ01001282    ODM92265.1    NWMT01000107    PCC99322.1    LNIX01000004    OXA56329.1    JF815103    AEG74454.1    GU980922    ADE27971.1    KQ976418    KYM89450.1   
Pfam
PF00061   Lipocalin
Interpro
IPR012674   Calycin        + More
IPR031259   ILBP       
IPR000463   Fatty_acid-bd       
IPR000566   Lipocln_cytosolic_FA-bd_dom       
SUPFAM
SSF50814   SSF50814       
Gene 3D
PDB
1MDC     E-value=2.55641e-28,     Score=305

Ontologies

Topology

Subcellular location
Cytoplasm  
Length:
132
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.00019
Exp number, first 60 AAs:
0
Total prob of N-in:
0.15754
outside
1  -  132
 
 

Population Genetic Test Statistics

Pi
160.112632
Theta
17.710237
Tajima's D
0.659132
CLR
124.78215
CSRT
0.577421128943553
Interpretation
Uncertain

Multiple alignment of Orthologues

 
 

Gene Tree

 
 
Peptides ×
Source Sequence Identity Evalue
28556443 TTYTVDGNTVTHVVENPNGTATFK 100.00 2e-10
28556443 TTYTVDGNTVTHVVENPNGTATFK 100.00 2e-10
28556443 TTYTVDGNTVTHVVENPNGTATFK 100.00 2e-10
28556443 LLQFKPTTTLIK 100.00 2e-10
28556443 LLQFKPTTTLIK 100.00 2e-10
28556443 LLQFKPTTT 100.00 2e-08
28556443 EYGDTELK 100.00 6e-05
24093152 ETTNIEDNIK 100.00 8e-05
28556443 FVGLPEDQIRK 100.00 2e-04
28556443 YTFDREENFDGFLK 100.00 7e-04
28556443 YTFDREENFDGFLK 100.00 7e-04
28556443 YTFDREENFDGFLK 100.00 7e-04
28556443 WDGVAYR 100.00 7e-04
28556443 TTYTVDGNTVTHVVENPNGTATFK 100.00 7e-04
27102218 FVGIPEDQIR 100.00 0.001
28467696 VTIPTPGIMNPNEFKK 100.00 0.001
28556443 VTISADKWDGVAYR 100.00 0.001
28556443 TTYTVDGNTVTHVVENPNGTATFK 100.00 0.001
28556443 YTFDREENFDGFLK 100.00 0.001
Copyright@ 2018-2023    Any Comments and suggestions mail to:zhuzl@cqu.edu.cn   渝ICP备19006517号

渝公网安备 50010602502065号