Silkworm Genome Informatics Database

Gene

KWMTBOMO09716 Validated by peptides from experiments

Pre Gene Modal

BGIBMGA012946

Annotation

PREDICTED:_probable_ATP-dependent_RNA_helicase_kurz_[Amyelois_transitella]

Location

Bomo_Chr16(-):8002748-8011452 View in EpiBrowser

Location in the cell

Nuclear Reliability : 4.041

CDS

ATGGGAAAGTCTAGATACAATAGTAAGGCACGACAAGTTGTAAAGACAAATATTGATGATTCAAAAACTAATGAGATTAAGTTAGAATTTGCAAAATCTGAATATGGAAATGCCGATGCCAGTAATGCACTGGCTTTGCCATCTAAGAAGAGGCAAACAAGGGTGGTTAAAGAGAAAATAGAGAAGACACATTTTCTGTCAAAAGCTCAAAGGAAAAGATTGGAGAAGATTGTTGATAAAAAAAAGAAAAAAGAAAATAGAGCTGCTCTATTAGAATCACTTTCACAAGTACAAGCAACTCCCGAGGAAGTGAAACAGTTAACAGCCATATCTGCAGTCCAAACAATAGGGTTGCGGAAACTTAATGAGTTCAGTGTCGAAGCTTTTATGACCGAAAGCTTTGATAAACCTGAGGTAACACAACACAAGAAGATCAGCAGTATTGCTGGTGCTAAAAAACGTTTACGTCTTCTGAAACTGGAGAAGTCCGAAAAGAAGAAATCAAAATACGATCCCAATGTGGTTGGATTGGAACTCGAAGAAGATGAAAATTCATCTGATGATTCTGACAGTACAGACGAAGTGACAAACACAATTGAAGATGGATCCCAAAATGTCATTGATATTACAGAAAGTATGACTAAAAATAATAATGAGGCCACCAACAACATTAATGAAATCAACAAAACTATAAAATTGGATAATACGAAAACAAGTACTACGCTACAGGAACAGAAAGAAGATAATATCACTGATAAATTAAAAGTAATCAGTAAAAGTGTTAAAGATAAAGTGAAAATAAAAAAACCTTTATTAGAACACCCCACAGTGCATGTTAATGTGAAAAGAGACCCTAAAGTGCAGGTAGCAAGACTCAAACTCCCAGTACTCGGCGAGGAACAGAGAATAATGGAGTTAGTGAATGAGAATCAATTTCTTATTGTTGCGGGTGAAACAGGTAGTGGAAAGACAACTCAGATACCACAGTTCCTCTATGAAGCGGGGTATGCAGAGAAGAAAATGGTAGCTGTAACAGAACCTAGGCGTGTCGCTACGGTAGCCATGTCTGCTAGAGTTGCTCATGAATTGGCTTTAACTAACAAAGAGGTCTCGTATCTAATGCGTTTTGAAGGTAACACTACGAAGGACACAAAAATTAAATTTATGACTGATGGTGTACTATTAAAGGAGATTCAATCAGATTTCTTATTAAGCAAGTATTCGGTTGTGATAATAGACGAGGCTCACGAGAGAAGCGTATACACAGATATACTCTTGGGTTTGTTGTCTAGAATAGTCCCGTTGAGGTGTAAACGAGGCAGTCCGCTTCGTTTAATCATTATGTCGGCTACATTGAGAGTTGAAGACTTTACGGAGAACACTAGATTGTTTAAACAGCCCCCGCCTGTTATAAAGATCGAATCAAGACAGTTCCCAGTTACGGTGCATTTTAACAAAAACACATACAAGGATTATTTGAAGGAAGCATTCAGGAAAACAGTAAAAATACATACAAGGTTGCCTGAGGGTGGAATACTTATATTTGTCACGGGGCAACAGGAGGTACGTTATCTACTCCGGAAATTGAAATCCTGTTTCCCGTACCGCAAAGATGTGGATTATTCAAAGTTGATCACTAAGAACACTAAGGGAGTAGAGGTTGACACTGCTCTCGATTCAGAACCAGATGACATCAACTCTGATGATGACGAGGTTGAGAAAGAGATGAAAAGGGCCCGCAAAGCCAGGAGGAAAGCGAAAAAGAAAGTTAAAGCTTTACCAAAGATCAATTTGGATGATTATGATATGCCTGAAGATGATGGTCAGGCTGATTTGGTGGGCAATGATGACGACAGCGAGGGGCACTTGAGTGATTCAGACGCAGAGGAAGACTCCCTGATGCCGGAAATAAAGTCGTGTCGTCAACCTCTATGGGTCTTGCCTCTGTACTCTATGCTAAACTCGAACAAGCAAGCTCGGGTCTTCGAACCTCCCCCGGTGGGCGCCAGGCTGTGCGTGGTCAGCACGGATGTCGCGGAGACGTCTCTAACGATACCGGCCATTAAATACGTTGTCGATACTGGAAAAAAGAAAATGAAGGTACACGACCACGTGACGGGCGCGAGCGCGTGGCGCGTTGTGTGGACGAGCCAGGCCAGCGCCGGGCAGCGGGCGGGGCGCGCGGGGCGGGTGTGCGCCGGCCACGTGTACCGGCTGTACAGCAGCGCGGTCTACCAGCATGACTGCCCGCCGCAGCACGCGCCTGACCTCTGCCGCAGGCCCGTCGACGACCTGGTCCTCATGATGAAGTGCATGGGCATCGATAAGGCACACGAATGCTTAACTGCCGTGGCCCGTCGGAAAGTTACTGGCTCGCTTCAAGGAAAACTATAA

Protein

MGKSRYNSKARQVVKTNIDDSKTNEIKLEFAKSEYGNADASNALALPSKKRQTRVVKEKIEKTHFLSKAQRKRLEKIVDKKKKKENRAALLESLSQVQATPEEVKQLTAISAVQTIGLRKLNEFSVEAFMTESFDKPEVTQHKKISSIAGAKKRLRLLKLEKSEKKKSKYDPNVVGLELEEDENSSDDSDSTDEVTNTIEDGSQNVIDITESMTKNNNEATNNINEINKTIKLDNTKTSTTLQEQKEDNITDKLKVISKSVKDKVKIKKPLLEHPTVHVNVKRDPKVQVARLKLPVLGEEQRIMELVNENQFLIVAGETGSGKTTQIPQFLYEAGYAEKKMVAVTEPRRVATVAMSARVAHELALTNKEVSYLMRFEGNTTKDTKIKFMTDGVLLKEIQSDFLLSKYSVVIIDEAHERSVYTDILLGLLSRIVPLRCKRGSPLRLIIMSATLRVEDFTENTRLFKQPPPVIKIESRQFPVTVHFNKNTYKDYLKEAFRKTVKIHTRLPEGGILIFVTGQQEVRYLLRKLKSCFPYRKDVDYSKLITKNTKGVEVDTALDSEPDDINSDDDEVEKEMKRARKARRKAKKKVKALPKINLDDYDMPEDDGQADLVGNDDDSEGHLSDSDAEEDSLMPEIKSCRQPLWVLPLYSMLNSNKQARVFEPPPVGARLCVVSTDVAETSLTIPAIKYVVDTGKKKMKVHDHVTGASAWRVVWTSQASAGQRAGRAGRVCAGHVYRLYSSAVYQHDCPPQHAPDLCRRPVDDLVLMMKCMGIDKAHECLTAVARRKVTGSLQGKL

Uniprot

H9JTT4 A0A194PZW1 A0A212FN09 A0A3S2TJ77 W8BF73 A0A0L0C4Q4 + More
A0A034V9B4 A0A034V771 B4H367 A0A1A9W634 A0A2J7PF51 A0A195EG13 A0A158NHY4 F4WPW3 A0A0K2TY66 T1I963 A0A195AWW4 A0A0L7R0L8 E2BIK3

Pubmed

19121390 26354079 22118469 24495485 26108605 25348373 + More
17994087 21347285 21719571 20798317

EMBL

BABH01003502 BABH01003503 BABH01003504 KQ459582 KPI98867.1 AGBW02007648 + More
OWR55134.1 RSAL01000100 RVE47545.1 GAMC01010992 JAB95563.1 JRES01000907 KNC27353.1 GAKP01020597 JAC38355.1 GAKP01020598 JAC38354.1 CH479205 EDW30760.1 NEVH01026085 PNF14952.1 KQ978957 KYN27205.1 ADTU01016112 GL888255 EGI63792.1 HACA01012955 CDW30316.1 ACPB03005725 KQ976725 KYM76540.1 KQ414670 KOC64378.1 GL448516 EFN84450.1

Proteomes

UP000005204 UP000053268 UP000007151 UP000283053 UP000037069 UP000008744 + More
UP000091820 UP000235965 UP000078492 UP000005205 UP000007755 UP000015103 UP000078540 UP000053825 UP000008237

PRIDE

H9JTT4

Pfam

PF00270   DEAD        + More
PF00271   Helicase_C
PF04408   HA2
PF07717   OB_NTP_bind

Interpro

IPR007502   Helicase-assoc_dom        + More
IPR027417   P-loop_NTPase
IPR002464   DNA/RNA_helicase_DEAH_CS
IPR011545   DEAD/DEAH_box_helicase_dom
IPR011709   DUF1605
IPR001650   Helicase_C
IPR014001   Helicase_ATP-bd
IPR003593   AAA+_ATPase

SUPFAM

SSF52540 SSF52540

CDD

cd00079 HELICc

ProteinModelPortal

H9JTT4 A0A194PZW1 A0A212FN09 A0A3S2TJ77 W8BF73 A0A0L0C4Q4 + More
A0A034V9B4 A0A034V771 B4H367 A0A1A9W634 A0A2J7PF51 A0A195EG13 A0A158NHY4 F4WPW3 A0A0K2TY66 T1I963 A0A195AWW4 A0A0L7R0L8 E2BIK3

PDB

6O16 E-value=4.5904e-137, Score=1253

KEGG

101744182 K14780 ATP-dependent RNA helicase DHX37/DHR1 [EC:3.6.4.13] | (RefSeq) probable ATP-dependent RNA hel

GO

GO:0005524 GO:0004386 GO:0003676 GO:0016787 GO:0008026 GO:0016788 GO:0046872 GO:0003723 GO:0006730 GO:0009258 GO:0016155 GO:0003824

Length:

797

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00167

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00030

outside

1 - 797

Pi

174.039091

Theta

150.885451

Tajima's D

0.20306

CLR

2.651196

CSRT

0.422828858557072

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics