Gene

KWMTBOMO09715  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA012946

Annotation

PREDICTED:_probable_ATP-dependent_RNA_helicase_kurz_[Amyelois_transitella]

Location

Bomo_Chr16(-):7993422-8001072      View in EpiBrowser

Location in the cell

Cytoplasmic   Reliability : 2.289

CDS

ATGAAGCCCCCAGATGAAAAGCAAGCCAGGCTGCTCAGGCAATTGGTGCTTAGTGGACTCGGAGATCAGGTCGGCAGGAAAATCGGCCTGGACGAGGTCAAAGAAGGCGAAGACAAAAGGAAATTCAAGTACGCTTACCACTGCGGCGACCTGGAGGAGCCCGTGCATCTGCACTCGGCTTCGGTGCTCCGCAAAACGATACCGGAGTGGGTGGTGTACCAGCAGCTATACGAGACGGGCGCCGAGGAACGAAGGAAGATGGTGATGAGCAACGTAACGGCCATCGAACCGGAATGGCTGCCCGTCTACGTGCCGCAGCTGTGCAATCTAGGTGAGCCTCTGTCTGATCCGGAGCCGCGTTACGAAGACGTAACTGGTAAAGTCCTATGTCACTACAAAGGCACGTTCGGCAAGGCGGGCTGGGAGCTGCCGGTTGTTGAAATCGAAATGCCCGAAAAAATTGAACGCTACCGATGGTTCGCGCGTTTCTTACTGGAGGGGTCAGTGTTTCCCAAACTTCGGAAGTACACGCCCTCTTTGTTGTCACCACCGTCGACGATGGTGAAATCGTGGGCGAAGCTGCAGCCCAGAACCGAGATATTATTAAAAGCTTTGTTAATGAAAAGAACCAGTACCAGGGAGTCGTTGAGGAAAATCTGGGAAGACCAGAAAAACTACTTACTTGAAGAGTATCTGAAGTGGCTTCCGGAGTCAGCCCATAACGAAGCTACATTGTACTGGCCGCCATTATGA

Protein

MKPPDEKQARLLRQLVLSGLGDQVGRKIGLDEVKEGEDKRKFKYAYHCGDLEEPVHLHSASVLRKTIPEWVVYQQLYETGAEERRKMVMSNVTAIEPEWLPVYVPQLCNLGEPLSDPEPRYEDVTGKVLCHYKGTFGKAGWELPVVEIEMPEKIERYRWFARFLLEGSVFPKLRKYTPSLLSPPSTMVKSWAKLQPRTEILLKALLMKRTSTRESLRKIWEDQKNYLLEEYLKWLPESAHNEATLYWPPL

Uniprot

H9JTT4   A0A3S2TJ77   A0A2A4JJ95   A0A2W1BIM9   A0A212FN09   S4PXL7   + More
A0A194R1L0   A0A2J7PF36   A0A2J7PF51   A0A067RN61   A0A232EIX9   A0A3Q0JJX3   A0A154PJL3   A0A151WR00   A0A1J1HK52   A0A0J7NFQ4   A0A0L7R0L8   A0A087ZYB4   F4WPW3   E9IBM0   A0A195EG13   A0A195FDP0   A0A2A3EEH6   A0A1B6J8J0   A0A2P8XMH3   E2AIT2   A0A195AWW4   A0A195CKR7   A0A158NHY4   A0A1B6MBY0   N6U7L6   T1I963   A0A023F1U5   A0A224XH70   A0A1D2NA13   A0A0N8A389   A0A0P6B297   A0A162NF76   A0A0P4XV70   A0A0P6GSJ9   A0A0P5L590   A0A1B6CYI3   A0A0P5Q8S7   A0A0P6EEC9   A0A0P5GCZ0   A0A0P5IB35   A0A0P5NDC4   A0A0P5JDJ1   A0A0P6JZ06   E9G568   A0A0P6EKJ6   A0A1B6MT99   A0A1B6K7Y3   A0A146KWM9   A0A1B6FXZ6   A0A0A9YHQ9   A0A0P5XWM8   A0A0A9YDM0   T1J6J7   A0A226EPJ8   U4UB47   B4NE72   A0A0P6DZQ9   A0A026WX26   A0A3L8D9C7   A0A1A8SD33   A0A0T6B286   C3YFT9   D2A3P7   B4JWU3   B0W6U6   B4MA33   A0A0M4FBF8   B3MYT1   E2BIK3   R7UNM0   A0A1A8M5U1   K1Q1G9   V4AUC5   A0A0L0C4Q4   A0A2P4SKN3   B4L6V6   A0A3Q2EBR3   A0A3Q2EC87   A0A0P5F6Z6   A0A034V9B4   A0A034V771   A0A210Q0H9   A0A1Q3F0A1   A0A0K8VS77   F7F3D3   A0A1I8MU04   B3P8Z2   A0A1S3J317   A0A091TH09   B4R3G4   B4Q185   A0A1I8PKF2   A0A0A0A7D0   A0A093CV78  

Pubmed

19121390    28756777    22118469    23622113    26354079    24845553    + More
28648823    21719571    21282665    29403074    20798317    21347285    23537049    25474469    27289101    21292972    26823975    25401762    17994087    24508170    30249741    18563158    18362917    19820115    23254933    22992520    26108605    25348373    28812685    18464734    25315136    17550304   

EMBL

BABH01003502    BABH01003503    BABH01003504    RSAL01000100    RVE47545.1    NWSH01001271    + More
PCG71899.1    KZ150128    PZC73087.1    AGBW02007648    OWR55134.1    GAIX01004818    JAA87742.1    KQ460878    KPJ11577.1    NEVH01026085    PNF14950.1    PNF14952.1    KK852571    KDR21124.1    NNAY01004159    OXU18268.1    KQ434912    KZC11400.1    KQ982813    KYQ50329.1    CVRI01000005    CRK87788.1    LBMM01005595    KMQ91395.1    KQ414670    KOC64378.1    GL888255    EGI63792.1    GL762111    EFZ22036.1    KQ978957    KYN27205.1    KQ981636    KYN38780.1    KZ288266    PBC30118.1    GECU01012197    JAS95509.1    PYGN01001724    PSN33185.1    GL439878    EFN66658.1    KQ976725    KYM76540.1    KQ977622    KYN01320.1    ADTU01016112    GEBQ01006549    JAT33428.1    APGK01036710    KB740941    ENN77660.1    ACPB03005725    GBBI01003215    JAC15497.1    GFTR01008616    JAW07810.1    LJIJ01000125    ODN02093.1    GDIP01186825    JAJ36577.1    GDIP01023163    JAM80552.1    LRGB01000568    KZS17920.1    GDIP01237364    JAI86037.1    GDIQ01029358    JAN65379.1    GDIQ01181845    JAK69880.1    GEDC01018847    JAS18451.1    GDIQ01117615    JAL34111.1    GDIQ01063887    JAN30850.1    GDIQ01243928    GDIQ01242774    GDIQ01241329    GDIQ01239781    JAK08951.1    GDIQ01217135    JAK34590.1    GDIQ01144168    JAL07558.1    GDIQ01201638    JAK50087.1    GDIQ01002672    JAN92065.1    GL732532    EFX85421.1    GDIQ01074984    JAN19753.1    GEBQ01000849    JAT39128.1    GECU01000139    JAT07568.1    GDHC01019162    JAP99466.1    GECZ01014707    JAS55062.1    GBHO01012448    JAG31156.1    GDIP01066388    JAM37327.1    GBHO01012447    JAG31157.1    JH431878    LNIX01000003    OXA58751.1    KB632225    ERL90282.1    CH964239    EDW82041.1    GDIQ01069840    JAN24897.1    KK107078    EZA60291.1    QOIP01000011    RLU16508.1    HAEI01012981    SBS15450.1    LJIG01016144    KRT81484.1    GG666510    EEN60744.1    KQ971348    EFA05543.2    CH916376    EDV95219.1    DS231849    EDS36927.1    CH940655    EDW66092.1    CP012528    ALC49945.1    CH902632    EDV32775.1    GL448516    EFN84450.1    AMQN01001119    KB299619    ELU07825.1    HAEF01011228    SBR51896.1    JH818600    EKC30297.1    KB201305    ESO97341.1    JRES01000907    KNC27353.1    PPHD01039330    POI24662.1    CH933812    EDW06102.2    GDIQ01264783    JAJ86941.1    GAKP01020597    JAC38355.1    GAKP01020598    JAC38354.1    NEDP02005302    OWF42264.1    GFDL01014071    JAV20974.1    GDHF01010595    JAI41719.1    CH954183    EDV45597.1    KK472714    KFQ58051.1    CM000366    EDX16916.1    CM000162    EDX01392.1    KL870823    KGL89378.1    KL249182    KFV16824.1   

Proteomes

UP000005204    UP000283053    UP000218220    UP000007151    UP000053240    UP000235965    + More
UP000027135    UP000215335    UP000079169    UP000076502    UP000075809    UP000183832    UP000036403    UP000053825    UP000005203    UP000007755    UP000078492    UP000078541    UP000242457    UP000245037    UP000000311    UP000078540    UP000078542    UP000005205    UP000019118    UP000015103    UP000094527    UP000076858    UP000000305    UP000198287    UP000030742    UP000007798    UP000053097    UP000279307    UP000001554    UP000007266    UP000001070    UP000002320    UP000008792    UP000092553    UP000007801    UP000008237    UP000014760    UP000005408    UP000030746    UP000037069    UP000009192    UP000265020    UP000242188    UP000002279    UP000095301    UP000008711    UP000085678    UP000000304    UP000002282    UP000095300    UP000053858   

PRIDE

H9JTT4   

Pfam

PF00270   DEAD        + More
PF00271   Helicase_C
PF04408   HA2
PF07717   OB_NTP_bind
PF04176   TIP41
PF04100   Vps53_N
PF13850   ERGIC_N
PF01465   GRIP
PF07970   COPIIcoated_ERV
PF11822   DUF3342

Interpro

IPR007502   Helicase-assoc_dom        + More
IPR027417   P-loop_NTPase       
IPR002464   DNA/RNA_helicase_DEAH_CS       
IPR011545   DEAD/DEAH_box_helicase_dom       
IPR011709   DUF1605       
IPR001650   Helicase_C       
IPR014001   Helicase_ATP-bd       
IPR003593   AAA+_ATPase       
IPR007303   TIP41-like       
IPR007234   Vps53_N       
IPR042035   DEAH_win-hel_dom       
IPR000237   GRIP_dom       
IPR012936   Erv_C       
IPR039542   Erv_N       
IPR021777   DUF3342       

SUPFAM

SSF52540   SSF52540       

Gene 3D

1.10.10.2130    

CDD

cd00079  HELICc

ProteinModelPortal

H9JTT4   A0A3S2TJ77   A0A2A4JJ95   A0A2W1BIM9   A0A212FN09   S4PXL7   + More
A0A194R1L0   A0A2J7PF36   A0A2J7PF51   A0A067RN61   A0A232EIX9   A0A3Q0JJX3   A0A154PJL3   A0A151WR00   A0A1J1HK52   A0A0J7NFQ4   A0A0L7R0L8   A0A087ZYB4   F4WPW3   E9IBM0   A0A195EG13   A0A195FDP0   A0A2A3EEH6   A0A1B6J8J0   A0A2P8XMH3   E2AIT2   A0A195AWW4   A0A195CKR7   A0A158NHY4   A0A1B6MBY0   N6U7L6   T1I963   A0A023F1U5   A0A224XH70   A0A1D2NA13   A0A0N8A389   A0A0P6B297   A0A162NF76   A0A0P4XV70   A0A0P6GSJ9   A0A0P5L590   A0A1B6CYI3   A0A0P5Q8S7   A0A0P6EEC9   A0A0P5GCZ0   A0A0P5IB35   A0A0P5NDC4   A0A0P5JDJ1   A0A0P6JZ06   E9G568   A0A0P6EKJ6   A0A1B6MT99   A0A1B6K7Y3   A0A146KWM9   A0A1B6FXZ6   A0A0A9YHQ9   A0A0P5XWM8   A0A0A9YDM0   T1J6J7   A0A226EPJ8   U4UB47   B4NE72   A0A0P6DZQ9   A0A026WX26   A0A3L8D9C7   A0A1A8SD33   A0A0T6B286   C3YFT9   D2A3P7   B4JWU3   B0W6U6   B4MA33   A0A0M4FBF8   B3MYT1   E2BIK3   R7UNM0   A0A1A8M5U1   K1Q1G9   V4AUC5   A0A0L0C4Q4   A0A2P4SKN3   B4L6V6   A0A3Q2EBR3   A0A3Q2EC87   A0A0P5F6Z6   A0A034V9B4   A0A034V771   A0A210Q0H9   A0A1Q3F0A1   A0A0K8VS77   F7F3D3   A0A1I8MU04   B3P8Z2   A0A1S3J317   A0A091TH09   B4R3G4   B4Q185   A0A1I8PKF2   A0A0A0A7D0   A0A093CV78  

PDB

6O16     E-value=4.01823e-59,     Score=575

KEGG

101744182    K14780 ATP-dependent RNA helicase DHX37/DHR1 [EC:3.6.4.13] | (RefSeq) probable ATP-dependent RNA hel

GO

GO:0005524   GO:0004386   GO:0003676   GO:0016787   GO:0000462   GO:0034459   GO:0003723   GO:0005730   GO:0005634   GO:0016021   GO:0016887  

Length:

250

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.000550000000000001

Exp number, first 60 AAs:

0

Total prob of N-in:

0.09975

outside

1  -  250

 

 

Pi

221.822523

Theta

164.357375

Tajima's D

0.031292

CLR

141.636508

CSRT

0.380980950952452

Interpretation

Uncertain