Gene

KWMTBOMO09694

Annotation

PREDICTED:_uncharacterized_protein_LOC107171075?_partial_[Diuraphis_noxia]

Location

Bomo_Chr16(-):7307056-7309036      View in EpiBrowser

Location in the cell

Cytoplasmic   Reliability : 1.031 Mitochondrial   Reliability : 1.261 Nuclear   Reliability : 1.191

CDS

ATGGTCACAGTTGACGTACGCCCGGACGAGATCACACGTAATCCTACCTTCGAGTCTAGCACTGCAGCCTCCACTAATGCGTATGTGGGCTACAGTCGCTCGGTAGTTCTGTTGGGTACTTGTGTAGTTCGCGTTCGTCATCCTCGCAGTACTAATCAATCATTTCTTGTACGTGCGTTGATTGATAGTGGTGCTCAAGATTGTTTCATTACCAAGTCATGTTATCAACGTTTGGGCTTACCATTACGTCGCTGTCCATTAGCCGTAGTTGGTCTAGGTCAAAATGCTGTACATCACGTGACTGGAGTTACTTCTTGCACTGTACTTTCTCGTACTTCAGAAAATCCTCATTTCAACATTAATCCTATCGTAGTAAATACTATAACGAATAAAATGCCTGCTACAAACTTACCTACTAATCTTCGTGAATCTTTTAAACATCTGGTCCTCGCAGATGAGAATTTTGATAAACCATCAAATGTAGATTTACTACTCGGCGCAGAACTGTTCCATAGTATTTATGACGGTCAACGCGTTCAGCCCAGTCATGACCTACCGGTAGCTTTACACAGCGTGTTTGGTTGGGTCATCACCGGCAAACTTAATACAAACTATTTACCTCCGCCAAAAATATCTTCTCTCTTAGCATCCACACGTTCTCTGGACGAGGGACTCAAGCGATTCTGGGAGATCGAAGAACCTCCAAGTCAGGTTATCTTAAACCCTGAAGATATTAAATGTGAACAAATGTACTCAAATCTAACGTATCGTAATCCCGACGGCAGATATGTTGTACCTATGCTTCTCAAAGAACCTATCAGTCAACTAGGCGATTCTTTCAACCAATCTTTCTCTCGGCTCGTTAACCTCGAACGACGCCTTGATCGAAACTTAGAGTTGAAAAAAGAGTACACCGCCTTTATGCGCGAATACAAGCTGTTAGGGCATATGGAGCCTAGCGCTGACTCAAATAAAATCGGGCAGTATATAATTCCTCATCATTGTGTCATTCGCCCGGAAAGTACAACGACTAAACTTAGAGTTGTATTCGATGCTAGCGCCAAAACTACCAATGGCAAATCTCTTAACGATCTTGTATATACTGGTCCAAAACTTCAAAACGATATAGGAGATATACTTACAAAATTTCGCTTGCATGCTGTTGTTTTTACTGCCGACATCAGTAAGATGTATCGAAACATCGAACTTAGGCCAGAAGACCGAAAATGGCAGCATATACTTTGGCGCGATTCTCCTTCTGATCCTGTAACTGAGTACGAGTTGAAAACGGTAACCTACGGGGTTACGAGTTCCCCTTATCTGGCAATACGTACTCTGCATCAATTAGCCTCTGACTACGAAAAAGAGTGGCCCTTAGCAGCTGCTAGTCTTCGTCATGATACTTTCATGGATGACATCACTGTTGGTGCTACATCTATTGAAACTGCACTGAAACATAAAGAAGAGTTAATACAAATGTTAGCGCGTGCTAAGTTCGAATTACGTAAATGGAGTAGCAACTCACCCGAATTCCTCACTCAGATACCAACGGAACATTGTCAAGTTCCAAAAATATTTTGTGATGAAAAACAAAAACAAAGTATCAAGATTCTTGGAGTCCAATGGGATCCAGCTGATGATAACTTCACTTATGCTTTATCAGAACTCACTCCAGGGAATACAAAACTGGCATCTATTTACATCTGA

Protein

MVTVDVRPDEITRNPTFESSTAASTNAYVGYSRSVVLLGTCVVRVRHPRSTNQSFLVRALIDSGAQDCFITKSCYQRLGLPLRRCPLAVVGLGQNAVHHVTGVTSCTVLSRTSENPHFNINPIVVNTITNKMPATNLPTNLRESFKHLVLADENFDKPSNVDLLLGAELFHSIYDGQRVQPSHDLPVALHSVFGWVITGKLNTNYLPPPKISSLLASTRSLDEGLKRFWEIEEPPSQVILNPEDIKCEQMYSNLTYRNPDGRYVVPMLLKEPISQLGDSFNQSFSRLVNLERRLDRNLELKKEYTAFMREYKLLGHMEPSADSNKIGQYIIPHHCVIRPESTTTKLRVVFDASAKTTNGKSLNDLVYTGPKLQNDIGDILTKFRLHAVVFTADISKMYRNIELRPEDRKWQHILWRDSPSDPVTEYELKTVTYGVTSSPYLAIRTLHQLASDYEKEWPLAAASLRHDTFMDDITVGATSIETALKHKEELIQMLARAKFELRKWSSNSPEFLTQIPTEHCQVPKIFCDEKQKQSIKILGVQWDPADDNFTYALSELTPGNTKLASIYI

Similarity

Belongs to the synaptobrevin family.

Uniprot

A0A1U8N896   V5GHM7   A0A2S2PNC2   X1WVF9   X1XU49   J9LKN0   + More
J9JUM9   J9K351   A0A224XGH3   A0A2S2R014   J9JVZ7   A0A2S2NNC8   A0A0A9Z001   X1WYQ8   X1WQX8   A0A0K8SX96   A0A2S2P2U4   A0A3Q0J9C9   A0A2S2NIB3   A0A2S2PM34   X1WY64   A0A146LUX6   A0A2S2NZ22   J9JVD6   X1X096   X1X412   A0A2S2QWS1   A0A2S2NDE3   A0A2S2QVB8   J9KZG0   X1XU04   J9JNP4   X1WY95   A0A2S2P1X6   X1WTX8   A0A2S2PRK4   A0A2S2NCY5   A0A1Y1KMX0   X1WZY4   A0A2S2NBR8   A0A2S2PI15   J9L650   J9L9H5   A0A1B6GGX5   X1X5R1   A0A0A9Z275   A0A0A9WAJ3   A0A437AV42   A0A2S2P963   J9L3C9   X1WPV8   A0A0A9WEJ9   J9JUA7   A0A1Y1KV73   A0A0A9WH19   X1WRA3   A0A2S2NHU0   X1XET3   A0A0J7K7U0   A0A2S2PC01   J9JL40   X1WWF4   X1WZC6   X1XU46   X1XTX7   J9LPA9   A0A2S2R2J0   A0A146L5E8   J9JKU0   J9JUK4   A0A2S2NPW7   A0A0A9WE49   J9LSC7   J9JLN5   X1WYQ7   V5G7F0   J9M7R2   J9KXW4   X1XU26   A0A0J7KNI7   A0A0A9ZJJ6   A0A0A9WBL7   A0A2S2PBK9   A0A2S2PLW6   J9JS75   A0A0A9ZG52   A0A2S2P047   A0A2S2NWE9   A0A1U8N859   A0A2S2NZ32   J9K0A1   A0A0A9VYL4   X1XTX9   A0A0A9VSF7   A0A0A9ZHU0   J9LIW1   A0A146L7F7   A0A2S2QLL5   J9JLG6   A0A023F0C4  

Pubmed

25893780    25401762    26823975    28004739    25474469   

EMBL

GALX01004947    JAB63519.1    GGMR01018294    MBY30913.1    ABLF02026240    ABLF02055027    + More
ABLF02024986    ABLF02008319    ABLF02008320    ABLF02004035    ABLF02004036    ABLF02004037    ABLF02004038    ABLF02008018    ABLF02008020    ABLF02012635    ABLF02061171    ABLF02025193    GFTR01008866    JAW07560.1    GGMS01014133    MBY83336.1    ABLF02015138    GGMR01005823    MBY18442.1    GBHO01006408    JAG37196.1    ABLF02028666    ABLF02066713    ABLF02002658    ABLF02034765    ABLF02042453    GBRD01007977    JAG57844.1    GGMR01011131    MBY23750.1    GGMR01003897    MBY16516.1    GGMR01017890    MBY30509.1    ABLF02012239    ABLF02012241    ABLF02017372    ABLF02042178    ABLF02066436    GDHC01008459    JAQ10170.1    GGMR01009860    MBY22479.1    ABLF02008594    ABLF02008032    ABLF02035293    ABLF02060940    ABLF02008635    ABLF02023121    ABLF02065930    ABLF02065931    GGMS01012379    MBY81582.1    GGMR01002187    MBY14806.1    GGMS01012504    MBY81707.1    ABLF02005616    ABLF02059449    ABLF02028417    ABLF02042407    ABLF02005684    ABLF02030854    ABLF02067347    GGMR01010723    MBY23342.1    ABLF02054908    GGMR01019355    MBY31974.1    GGMR01002421    MBY15040.1    GEZM01085145    GEZM01085143    JAV60187.1    ABLF02036131    ABLF02041527    ABLF02064049    GGMR01002024    MBY14643.1    GGMR01016460    MBY29079.1    ABLF02038236    ABLF02008636    GECZ01008071    JAS61698.1    ABLF02006784    GBHO01007689    JAG35915.1    GBHO01038800    JAG04804.1    RSAL01000392    RVE41994.1    GGMR01013370    MBY25989.1    ABLF02041650    GBHO01037783    JAG05821.1    GEZM01078370    GEZM01078366    GEZM01078363    JAV62757.1    GBHO01037781    JAG05823.1    ABLF02066034    GGMR01003717    MBY16336.1    ABLF02041762    LBMM01012238    KMQ86334.1    GGMR01014306    MBY26925.1    ABLF02018732    ABLF02018737    ABLF02036323    ABLF02066977    ABLF02014763    ABLF02016494    ABLF02003339    ABLF02058001    ABLF02006304    ABLF02036268    ABLF02035780    GGMS01014951    MBY84154.1    GDHC01016272    JAQ02357.1    ABLF02021785    ABLF02039606    GGMR01006575    MBY19194.1    GBHO01038805    GBHO01038804    GBHO01038801    JAG04799.1    JAG04800.1    JAG04803.1    ABLF02034704    ABLF02034708    ABLF02034709    ABLF02044644    ABLF02055319    ABLF02027576    ABLF02066434    ABLF02066438    ABLF02041670    GALX01002411    JAB66055.1    ABLF02005251    ABLF02055296    ABLF02009779    ABLF02067216    ABLF02001506    ABLF02008029    ABLF02035899    ABLF02037719    ABLF02046327    ABLF02064627    LBMM01005112    KMQ91804.1    GBHO01000059    JAG43545.1    GBHO01039691    GBHO01039690    JAG03913.1    JAG03914.1    GGMR01014165    MBY26784.1    GGMR01017784    MBY30403.1    ABLF02004278    ABLF02004280    ABLF02065929    GBHO01000060    JAG43544.1    GGMR01010198    MBY22817.1    GGMR01008932    GGMR01010920    MBY21551.1    MBY23539.1    GGMR01009854    MBY22473.1    ABLF02067195    GBHO01044316    JAF99287.1    ABLF02042081    GBHO01044317    GBHO01044315    JAF99286.1    JAF99288.1    GBHO01000061    JAG43543.1    ABLF02003736    ABLF02008292    ABLF02008294    ABLF02046909    ABLF02052378    GDHC01014268    JAQ04361.1    GGMS01009443    MBY78646.1    ABLF02030698    ABLF02030705    ABLF02030709    GBBI01004408    JAC14304.1   

Proteomes

UP000189702    UP000007819    UP000079169    UP000283053    UP000036403   

Pfam

PF18701   DUF5641        + More
PF05380   Peptidase_A17
PF03564   DUF1759
PF05585   DUF1758
PF17921   Integrase_H2C2
PF00665   rve
PF00078   RVT_1
PF09337   zf-H2C2
PF13774   Longin

Interpro

IPR001584   Integrase_cat-core        + More
IPR008042   Retrotrans_Pao       
IPR012337   RNaseH-like_sf       
IPR008737   Peptidase_asp_put       
IPR040676   DUF5641       
IPR005312   DUF1759       
IPR041588   Integrase_H2C2       
IPR036397   RNaseH_sf       
IPR021109   Peptidase_aspartic_dom_sf       
IPR001969   Aspartic_peptidase_AS       
IPR000477   RT_dom       
IPR001878   Znf_CCHC       
IPR015416   Znf_H2C2_histone_UAS-bd       
IPR036875   Znf_CCHC_sf       
IPR011012   Longin-like_dom_sf       
IPR010908   Longin_dom       
IPR017907   Znf_RING_CS       
IPR001995   Peptidase_A2_cat       

SUPFAM

SSF53098   SSF53098        + More
SSF50630   SSF50630       
SSF57756   SSF57756       
SSF64356   SSF64356       

Gene 3D

3.30.420.10     2.40.70.10    

ProteinModelPortal

A0A1U8N896   V5GHM7   A0A2S2PNC2   X1WVF9   X1XU49   J9LKN0   + More
J9JUM9   J9K351   A0A224XGH3   A0A2S2R014   J9JVZ7   A0A2S2NNC8   A0A0A9Z001   X1WYQ8   X1WQX8   A0A0K8SX96   A0A2S2P2U4   A0A3Q0J9C9   A0A2S2NIB3   A0A2S2PM34   X1WY64   A0A146LUX6   A0A2S2NZ22   J9JVD6   X1X096   X1X412   A0A2S2QWS1   A0A2S2NDE3   A0A2S2QVB8   J9KZG0   X1XU04   J9JNP4   X1WY95   A0A2S2P1X6   X1WTX8   A0A2S2PRK4   A0A2S2NCY5   A0A1Y1KMX0   X1WZY4   A0A2S2NBR8   A0A2S2PI15   J9L650   J9L9H5   A0A1B6GGX5   X1X5R1   A0A0A9Z275   A0A0A9WAJ3   A0A437AV42   A0A2S2P963   J9L3C9   X1WPV8   A0A0A9WEJ9   J9JUA7   A0A1Y1KV73   A0A0A9WH19   X1WRA3   A0A2S2NHU0   X1XET3   A0A0J7K7U0   A0A2S2PC01   J9JL40   X1WWF4   X1WZC6   X1XU46   X1XTX7   J9LPA9   A0A2S2R2J0   A0A146L5E8   J9JKU0   J9JUK4   A0A2S2NPW7   A0A0A9WE49   J9LSC7   J9JLN5   X1WYQ7   V5G7F0   J9M7R2   J9KXW4   X1XU26   A0A0J7KNI7   A0A0A9ZJJ6   A0A0A9WBL7   A0A2S2PBK9   A0A2S2PLW6   J9JS75   A0A0A9ZG52   A0A2S2P047   A0A2S2NWE9   A0A1U8N859   A0A2S2NZ32   J9K0A1   A0A0A9VYL4   X1XTX9   A0A0A9VSF7   A0A0A9ZHU0   J9LIW1   A0A146L7F7   A0A2S2QLL5   J9JLG6   A0A023F0C4  

PDB

4OL8     E-value=0.0661862,     Score=86

KEGG

NA   

GO

GO:0015074   GO:0003676   GO:0004190   GO:0016021   GO:0008270   GO:0006508   GO:0051259   GO:0008449   GO:0030203   GO:0003723   GO:0006730   GO:0009258   GO:0016155   GO:0003824  

Length:

568

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.04069

Exp number, first 60 AAs:

0.0352

Total prob of N-in:

0.00315

outside

1  -  568

 

 

Pi

139.721306

Theta

173.93316

Tajima's D

-0.564521

CLR

363.513014

CSRT

0.235438228088596

Interpretation

Uncertain