SGID The Silkworm Genome Information Database
Gene
KWMTBOMO09688
Pre Gene Modal
BGIBMGA012879
Annotation
PREDICTED:_uncharacterized_protein_LOC106130010_[Amyelois_transitella]
Location in the cell
Nuclear   Reliability : 3.293
 

Sequence

CDS
ATGGTCAGTAATATTTCACTGTCTCTGGGAACTTTTCGCAACAAGGTTAATGAGCTCCAAAAGTCATCAAAGGAACCTGGAACATCTGTAAGTACTTTGGTACTGGAAAACGTAAACCCCGAAATTGTTCAACAACCGGCTTGCACAACAAAATCAGTGAACAGTGTTCTAGATGCTACAGACACGATAGATATAGATTTTACGTGTAATGAAAAAAATGAGAAAGGCTCGAGAGATTACTTGGTTCCGAGTATTGATGGTACTACTGTAATTGTCGACAATTGTCTGCCACTGCACAATGGTAAATCACTTTTGTCAGATTCCTCGGAATTAAGCACGGACACGTATGTACACGATACCCAGAAAAAAAGCGACGATACAGTGATTTTAGGAGGTAGTTTTAGTCGCCGACCACTTATAGGCATATCGTTTGCTCTAACAAACAACGGGGCTGTTGATGTAAACTCGAAAAGCTGCGCAATCAAACGTATCGTTTTCAATTACGAACATAATAATGTTAACGTTAATTGTGACTTAATTGAAAATTCGAAATCGTTGAGCGATTACGAATTTGATGATATGCATAAAAGTGTCACGGACGAGACTAAAAAGGTTTTAGTTAATTTAGAAATTAGAAAAAGACCTAACGTAGAAGACGATACGGACGACTCTAGAGTTCTAATTTTGAAAACAAATGCCATTGAGAAATTCGGACATGTCACTGTCCAGCCGCCAAATTATAAATTAGAGAAACGAAAAATTATTTACGACAGTTGGAAAGGGAATAAAAGAAGATTACTCGACGCCACGTTGAATAATGGAAATTTTGCGAGTACTAAATTGAAACAGAAATCGATTCATGATTTCCTCCCTAAGATTGTTAATGTTTTTAGTCTAAAAGGGGAAGATACAAATGCTGATCAAATAGAAAATGTGGCTAGTGTGAGGGCGATGAGTAAGAATTCTTGTGTCGGTGATACCAATAGAAGGACGCTGTGCAAAGTAAACGACAGAAACAATGAATCTCCAAGATCCGTTAAAACTACGTCTATAAGACGAGAGATTATATCTCCGCGGAGTCAAGATGTCAAAATAATAAGAACCGAAACACCTCATGTACAATCTGCTAAAGTAAGAAATGAAAGCGCAAGCGCCCACTGGCCCAGGAAAGGAATCGAGACACTAAATTTCAGTTTACCAGCAAAATCTAAATCCAATCGTACATCGATTTCTCCAAGAAGTATACCACATCATAAAATCGTTGCAGGGACTTATTTCGCGGTTGATGCATTTTCATATGGGGACATACCAAACGTGAAGCATTATTTTCTGACCCATTTTCACTCCGATCACTACACTGGTTTGAAGAAAAGCTTTAATAAACAACTATTCTGTTCAAGAATAACAGCGGATCTCTGTATCTCACGGCTAGGCGTGAACCCGAAGAGCATTCACGTTATAAGCATCGACGAAACGATCAGAATCGACGGCGTCGAAATAACGGCTGTTGACGCTAATCACTGTCCCGGGGCCTTGATGTTAGTGTTTACGCTGCCCAACGGGAAGACGTTGCTACACACTGGCGATTTTCGTGCATCGCACACCATGGAGTCGTACCCTATATTTTGGAATAAGGATATTCACACCGTCTATTTGGATACGACTTATTGCAATCCACGTTACGACTTCCCTACGCAAGATCAGAGCTTAGAAATGGCTTTACAGATTTTGAAACAGAAGAAGACGAACTTGGAGAGTGCCGGGAAAAAGTTTTCATCTGTGCTTATCGTGTGCGGTACTTATACGATAGGTAAAGAAAAGTTTTTCCTCGGTATCGCTCGTCGCGTCGGCTGTACGGTCTGGGCGTGTCCCGAAAAAGACAGGATCTTAAAGGTCGTCGAGGGACAAAGCTTCTCCCACTCGCCTCCGCAATCTTGCCAGCTACATGTGGTGCCCATGAGGGATCTTACGCATGAGAAATTACGGAGTTATCTGGACAGCCTCAAAGGTACATTCAGTGAGGTTGTGGCCTTCAAACCCAGTGGATGGGAAAACGGAAAGAATTCGTGCGTTGAAAAGGACTTTGTCACTATACACGGTATTCCATATAGTGAACATTCGAGTTTTTCAGAATTGATAAGATTTATAAAATTTTTGAAACCGAAACAAGTCGTGCCCACTGTTGATATATCTGGCGGGGTCAAAGCTGTTCAGAAATACTTTCCCTGCCCTCTGGTTAGCAAGGACGACGTAGCCGTCCAGAGCAAAGTTACAGATTACTTTAGTTTACAAAATCGACAGCAGGTCCCGGCTGTAACCTGA
Protein
MVSNISLSLGTFRNKVNELQKSSKEPGTSVSTLVLENVNPEIVQQPACTTKSVNSVLDATDTIDIDFTCNEKNEKGSRDYLVPSIDGTTVIVDNCLPLHNGKSLLSDSSELSTDTYVHDTQKKSDDTVILGGSFSRRPLIGISFALTNNGAVDVNSKSCAIKRIVFNYEHNNVNVNCDLIENSKSLSDYEFDDMHKSVTDETKKVLVNLEIRKRPNVEDDTDDSRVLILKTNAIEKFGHVTVQPPNYKLEKRKIIYDSWKGNKRRLLDATLNNGNFASTKLKQKSIHDFLPKIVNVFSLKGEDTNADQIENVASVRAMSKNSCVGDTNRRTLCKVNDRNNESPRSVKTTSIRREIISPRSQDVKIIRTETPHVQSAKVRNESASAHWPRKGIETLNFSLPAKSKSNRTSISPRSIPHHKIVAGTYFAVDAFSYGDIPNVKHYFLTHFHSDHYTGLKKSFNKQLFCSRITADLCISRLGVNPKSIHVISIDETIRIDGVEITAVDANHCPGALMLVFTLPNGKTLLHTGDFRASHTMESYPIFWNKDIHTVYLDTTYCNPRYDFPTQDQSLEMALQILKQKKTNLESAGKKFSSVLIVCGTYTIGKEKFFLGIARRVGCTVWACPEKDRILKVVEGQSFSHSPPQSCQLHVVPMRDLTHEKLRSYLDSLKGTFSEVVAFKPSGWENGKNSCVEKDFVTIHGIPYSEHSSFSELIRFIKFLKPKQVVPTVDISGGVKAVQKYFPCPLVSKDDVAVQSKVTDYFSLQNRQQVPAVT

Summary

Pfam
PF07522   DRMBL        + More
PF12706   Lactamase_B_2
PF01207   Dus
Interpro
IPR011084   DRMBL        + More
IPR036866   RibonucZ/Hydroxyglut_hydro       
IPR001269   tRNA_hU_synthase       
IPR035587   DUS-like_FMN-bd       
IPR013785   Aldolase_TIM       
IPR001279   Metallo-B-lactamas       
SUPFAM
SSF56281   SSF56281       
Gene 3D
PDB
4B87     E-value=3.28666e-72,     Score=694

Ontologies

GO

Topology

Length:
773
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.00454
Exp number, first 60 AAs:
0
Total prob of N-in:
0.00003
outside
1  -  773
 
 

Population Genetic Test Statistics

Pi
321.35306
Theta
186.870969
Tajima's D
2.849413
CLR
0.282545
CSRT
0.971251437428129
Interpretation
Uncertain
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