Gene

KWMTBOMO09684

Pre Gene Modal

BGIBMGA012877

Annotation

PREDICTED:_rabphilin-3A_[Amyelois_transitella]

Location

Bomo_Chr16(+):6906272-6946840      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 3.276

CDS

ATGAATATTCAAAATAAAGCCAACAAATACGTGTGCCCCAATGATCGACAGCTGTCACTTAGAGCCAAACTACGGACAGGCTGGAGCGCTGCCAGAAGCGAGCCGCCTCTGACGCCAAGCGAGAGGGAGGCTATAGCGGCTGTCGTCAAGAGAGCTGAGAAAGTAGATGAGGTTGAAGCGAAACGAATCGGACGTCTGGTTGCCCGACTAGAAGGTATGCGCCGTTCAGCACGTGGCCCTGCGCCGAGGACTTGCCTGCTCTGCGGGGAGACGGCGAGACTCCTGTCTCCGTTGAGGACCTGTGCCGTCTGTCGGAACACCGCCTGCTCCAAATGCGTTATAGATACACCACCGCATAGGTCCCCGCTGTATTCAAGGGAGCCATACATGTGTAATCTTTGCGCTGAAACGCGGGAAATGTGGAAGAAATCCGGGGCCTGGTTCTATAAATCTGTGCCGAAATATACCTTACCTGAAAGGAAGACGACGAGACGCTATGCTGAAACAGAATTATCAAGGACTTTACAGGAGGCGGGCAACAGCAGTAACGAAGGGAAAACTGATTCGGAGCCAGGATCCCCGTTAAGCATACACGCGCCATCTTTCTCGAGACAGCCTAGCAACACGGAGAGCAGGAAATCTGTGCCTTCGCCACATGACGGCCCATTTGACTGGAATGAAACTGACATTCTGACACACGGGTTCAGTGGGTTAAGCCTTCACAGGGCCGACAGTCTCAACCAAAGGCCATTGGGTTTGAAACGGACAAGCAGTAAAAGCAGTGCTTACAGCGTACGGAACGCGAGAAAGGATGCACAAAAACCGGTAACACAAATCGAAAGGGCCCCGGCCATCCCTGATGCCGGTTTTGGTACGTTAGAGATACGGCTGGCATACGAAAACGCTACATCCTCGTTAGCGGTCACGGTGCTAAGAGCCAGAGGGCTAATTGGCATGGACATGACAGGGTTGTCCGATCCGTTCTGTAGATTAGAGATTTTGCCAAAAGAAGGCACATATTCGAATAGACTTAGAACGAAAACCGTTCATAAAACGAAAAATCCTGAATTCAATGAAACCCTACATTTCTTTGGAATCACTGAATCGGACCTTTCGGTTAAATCTTTGGAGATCGTTTTATTTGACGACGACAGATATGGTTGCGACGAAATGGGCTCGGCGACAGTCTCTTTAAGGGAATGCGCCAAATCACCTACGCAATTACGTCTCGCTTTATCGGGCGCGTCAGGATGTGAACCGACCGGCCCGCGTATTCTGTTAGCCCTCTGTTATAGTACAAAAAAGAGGGCCCTCATTGTAACGATTTGCAGAGCCGCCGAACTACCTTCGCAGGATAGCAATGGGTACTCCGATCCGTTTGTTAAGCTACATCTTGATCCAGACCCATATCATAAAAAACACAAAACTTCAATCAAATGGCGCAATTTGAATCCAGTTTGGAATGAAGAATTTCTTTTCGAAACACGACCCACCGAACTTTCGCGCCAAAACTTAACGTTGACCGTTTGGGATAAAGATTATGGAAAACCAAACGATTTCCTGGGGAGCCTTATATTGGGAGCGAGCAGTAAAGGCAGAAGATTAAAACACTGGATGGACTGTATCAAATACCCCGATCACAGACACGAACAATGGCATTCTTTGACGGACACCCAACATCTTTAG

Protein

MNIQNKANKYVCPNDRQLSLRAKLRTGWSAARSEPPLTPSEREAIAAVVKRAEKVDEVEAKRIGRLVARLEGMRRSARGPAPRTCLLCGETARLLSPLRTCAVCRNTACSKCVIDTPPHRSPLYSREPYMCNLCAETREMWKKSGAWFYKSVPKYTLPERKTTRRYAETELSRTLQEAGNSSNEGKTDSEPGSPLSIHAPSFSRQPSNTESRKSVPSPHDGPFDWNETDILTHGFSGLSLHRADSLNQRPLGLKRTSSKSSAYSVRNARKDAQKPVTQIERAPAIPDAGFGTLEIRLAYENATSSLAVTVLRARGLIGMDMTGLSDPFCRLEILPKEGTYSNRLRTKTVHKTKNPEFNETLHFFGITESDLSVKSLEIVLFDDDRYGCDEMGSATVSLRECAKSPTQLRLALSGASGCEPTGPRILLALCYSTKKRALIVTICRAAELPSQDSNGYSDPFVKLHLDPDPYHKKHKTSIKWRNLNPVWNEEFLFETRPTELSRQNLTLTVWDKDYGKPNDFLGSLILGASSKGRRLKHWMDCIKYPDHRHEQWHSLTDTQHL

Uniprot

A0A212FBS3   A0A437B8X8   A0A194Q0P8   A0A194R224   A0A1Y1LN07   T1JK29   + More
A0A1B0DR20   D2A657   A0A1S3J982   A0A3S2PAC3   A0A0F8ADD1   A0A369SL72   A0A2U9BTV4   A0A1A8BN64   A0A1A8JKD2   A0A1A7X3C4   A0A1A8HCA1   A0A1A8LH70   A0A1A8VEN9   A0A1A8NV26   A0A1A8Q4H5   A0A140LH42   A0A1S3PGV3   A0A3B4Z394   A0A3Q2YHW7   A0A3P8SZH6   A0A3Q1BNS5   A0A3P8YIW7   A0A3B1JT35  

Pubmed

22118469    26354079    28004739    18362917    19820115    25835551    + More
30042472    23594743    25069045    25329095   

EMBL

AGBW02009293    OWR51167.1    RSAL01000115    RVE46894.1    KQ459582    KPI98883.1    + More
KQ460878    KPJ11564.1    GEZM01053006    JAV74228.1    JH431806    AJVK01019566    KQ971346    EFA05470.1    CM012445    RVE68481.1    KQ042844    KKF09767.1    NOWV01000003    RDD47301.1    CP026251    AWP06802.1    HADZ01004009    HAEA01014439    SBP67950.1    HAED01013956    HAEE01000372    SBR20388.1    HADW01011141    HADX01005566    SBP12541.1    HAEB01010373    HAEC01013599    SBQ81816.1    HAEF01006314    HAEG01006962    SBR43696.1    HADY01000095    HAEJ01018652    SBS59109.1    HAEI01000653    SBR72684.1    HAEH01009823    SBR88147.1    CU459012   

Proteomes

UP000007151    UP000283053    UP000053268    UP000053240    UP000092462    UP000007266    + More
UP000085678    UP000253843    UP000246464    UP000000437    UP000087266    UP000261400    UP000264820    UP000265080    UP000257160    UP000265140    UP000018467   

Pfam

PF02318   FYVE_2        + More
PF00168   C2

Interpro

IPR041282   FYVE_2        + More
IPR000008   C2_dom       
IPR030541   RBF-1       
IPR010911   Rab_BD       
IPR001565   Synaptotagmin       
IPR035892   C2_domain_sf       
IPR013083   Znf_RING/FYVE/PHD       
IPR011011   Znf_FYVE_PHD       
IPR017455   Znf_FYVE-rel       
IPR028698   RPH3A       

SUPFAM

SSF57903   SSF57903       

Gene 3D

2.60.40.150     3.30.40.10    

ProteinModelPortal

A0A212FBS3   A0A437B8X8   A0A194Q0P8   A0A194R224   A0A1Y1LN07   T1JK29   + More
A0A1B0DR20   D2A657   A0A1S3J982   A0A3S2PAC3   A0A0F8ADD1   A0A369SL72   A0A2U9BTV4   A0A1A8BN64   A0A1A8JKD2   A0A1A7X3C4   A0A1A8HCA1   A0A1A8LH70   A0A1A8VEN9   A0A1A8NV26   A0A1A8Q4H5   A0A140LH42   A0A1S3PGV3   A0A3B4Z394   A0A3Q2YHW7   A0A3P8SZH6   A0A3Q1BNS5   A0A3P8YIW7   A0A3B1JT35  

PDB

4LDC     E-value=1.87797e-38,     Score=401

KEGG

101746202    K19938 rabphilin-3A | (RefSeq) rabphilin-3A

GO

GO:0008021   GO:0017137   GO:0006886   GO:0016021   GO:0006887   GO:0016020   GO:0005623   GO:0046872   GO:0005515   GO:0016787   GO:0003723   GO:0006730   GO:0009258   GO:0016155   GO:0003824  

PANTHER

PTHR45729:SF6   PTHR45729:SF3  

Length:

561

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00256

Exp number, first 60 AAs:

0

Total prob of N-in:

0.01039

outside

1  -  561

 

 

Pi

217.29433

Theta

158.277166

Tajima's D

1.576965

CLR

0.13434

CSRT

0.80405979701015

Interpretation

Uncertain