Gene

KWMTBOMO09669  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA012873

Annotation

vacuolar_protein_sorting-associated_protein_37A_[Bombyx_mori]

Location

Bomo_Chr16(+):6541627-6546151      View in EpiBrowser

Location in the cell

Cytoplasmic   Reliability : 1.445 Nuclear   Reliability : 1.326

CDS

ATGATTCAATCGGATTATCCATCAGTTATGGGCCTGTTGGCTCATCTAAATTCTAATGAACTCAAAGAAATGCTCAATGATGATGCTAAATTTGAGTCTGTGCTAAAGGATGTTAAACAGGTCAAAGATTGGGACACTGAGAAAGAAATGTTCATAGCAAGTAATAGATCACTAGCAGAGTTTAATTTGGGAAAAGAACCAGAGTTAGAGAGAATGAAAGCTGAGCTACAAGAGAAATCAGAATTAGGGGAACAGCTCTGTACCCGTATTCAAGAATTACTAGATGATTATAGTAAGTTATTTATCACTTAG

Protein

MIQSDYPSVMGLLAHLNSNELKEMLNDDAKFESVLKDVKQVKDWDTEKEMFIASNRSLAEFNLGKEPELERMKAELQEKSELGEQLCTRIQELLDDYSKLFIT

Uniprot

Q1HQ35   S4PP95   A0A2A4K1H9   A0A2H1V3M7   A0A212FBN9   A0A194R2S4   + More
A0A194Q0R3   A0A437B967   A0A0L7KJR1   A0A2J7PRC9   E2BRL9   A0A026WD83   A0A195F9F8   A0A195BQ30   A0A158N9L5   A0A0M8ZWR8   E2AEC2   A0A0L7R4K0   F4WYF3   A0A151XGR9   A0A2P8YJJ5   A0A088ANN6   A0A2A3EGH0   V9IFP9   A0A0J7KS70   A0A154PQX0   A0A1B6LXJ7   A0A310SFZ2   A0A1B6DTB1   A0A1B6EY16   A0A1B6H6D1   A0A067R2P5   K7J2U2   A0A1E1XA03   A0A1E1XQK2   A0A023GG62   V5IJW9   A0A131XZ43   A0A293MP52   A0A2R5L9X3   A0A224YMG0   A0A131YHR8   L7M6K7   A0A087UWK9   A0A087TJJ2   A0A023FV53   A0A0A9WXQ5   J9K3B3   T1HKF3   A0A0P4VP39   A0A0P5X562   A0A0N8DQ57   A0A232F1X1   B7P7N7   A0A0P4YFT7   A0A0P6IPY1   A0A224XWY3   A0A0P5T9P1   A0A2P6K9C0   A0A1W4XTK8   A0A0P4Y2Q5   A0A0P4VZ89   A0A0P4YQV7   A0A0P5WU99   A0A2L2YMB3   A0A023F1H1   A0A2T7PHA8   A0A0B6ZM02   A0A2P2I333   T1ITX4   A7SWG3   A0A0V0GDB2   V3ZVL8   A0A0K8TLS7   T1KAS4   D2A3L9   A0A2C9LU20   F1LFA0   A0A1Y1LPZ6   A0A183IYE7   E0VHP5   B4JSQ0   A0A0H5SBJ8   A0A183UZT7   A0A0H5SDS6   A0A1S0UAS1   A0A340XLI7   A0A336LJE1   A0A0N4VGQ6   A0A368H2G3  

Pubmed

19121390    23622113    22118469    26354079    26227816    20798317    + More
24508170    30249741    21347285    21719571    29403074    24845553    20075255    28503490    29209593    25765539    28797301    26830274    25576852    25401762    26823975    27129103    28648823    26561354    25474469    17615350    23254933    26369729    18362917    19820115    15562597    21685128    28004739    20566863    17994087    17885136   

EMBL

BABH01003647    DQ443217    JX569224    ABF51306.1    AFW03819.1    GAIX01000372    + More
JAA92188.1    NWSH01000261    PCG77919.1    ODYU01000525    SOQ35438.1    AGBW02009293    OWR51155.1    KQ460878    KPJ11550.1    KQ459582    KPI98898.1    RSAL01000115    RVE46883.1    JTDY01009381    KOB63588.1    NEVH01022362    PNF18882.1    GL449965    EFN81711.1    KK107260    QOIP01000001    EZA54027.1    RLU26472.1    KQ981727    KYN36684.1    KQ976428    KYM87788.1    ADTU01009692    KQ435833    KOX71636.1    GL438827    EFN68355.1    KQ414657    KOC65810.1    GL888441    EGI60761.1    KQ982169    KYQ59501.1    PYGN01000551    PSN44412.1    KZ288254    PBC30810.1    JR040812    AEY59311.1    LBMM01003782    KMQ93146.1    KQ435056    KZC14292.1    GEBQ01011576    JAT28401.1    KQ772267    OAD52460.1    GEDC01008384    JAS28914.1    GECZ01026891    JAS42878.1    GECU01037484    JAS70222.1    KK852802    KDR16291.1    GFAC01003100    JAT96088.1    GFAA01001842    JAU01593.1    GBBM01002477    JAC32941.1    GANP01000707    JAB83761.1    GEFM01004810    JAP70986.1    GFWV01022740    MAA47467.1    GGLE01002129    MBY06255.1    GFPF01007661    MAA18807.1    GEDV01010070    JAP78487.1    GACK01006246    JAA58788.1    KK122011    KFM81748.1    KK115500    KFM65281.1    GBBL01001961    JAC25359.1    GBHO01032286    GBHO01010163    GBRD01004387    GBRD01003792    GDHC01005221    JAG11318.1    JAG33441.1    JAG61434.1    JAQ13408.1    ABLF02021374    ACPB03004345    GDKW01003097    JAI53498.1    GDIP01077316    JAM26399.1    GDIP01011791    LRGB01000930    JAM91924.1    KZS15046.1    NNAY01001280    OXU24510.1    ABJB010049202    DS652836    EEC02609.1    GDIP01228149    JAI95252.1    GDIQ01001240    JAN93497.1    GFTR01003394    JAW13032.1    GDIP01129212    JAL74502.1    MWRG01019569    PRD22912.1    GDIP01235603    JAI87798.1    GDRN01085198    JAI61378.1    GDIP01225948    JAI97453.1    GDIP01081713    JAM22002.1    IAAA01035442    IAAA01035443    LAA09229.1    GBBI01003873    JAC14839.1    PZQS01000004    PVD32805.1    HACG01022557    CEK69422.1    IACF01002805    LAB68444.1    JH431506    DS469859    EDO31948.1    GECL01000818    JAP05306.1    KB201643    ESO95558.1    GDAI01002713    JAI14890.1    CAEY01001942    KQ971348    EFA04908.1    JI210739    ADY48804.1    GEZM01049960    JAV75732.1    UZAM01011817    VDP18366.1    DS235171    EEB12931.1    CH916373    EDV94790.1    LN857010    CRZ25475.1    UYWY01022012    VDM45328.1    LN861479    CRZ26298.1    JH712129    EFO27819.1    UFQT01000022    SSX18000.1    UXUI01009982    VDD94603.1    JOJR01000029    RCN49799.1   

Proteomes

UP000005204    UP000218220    UP000007151    UP000053240    UP000053268    UP000283053    + More
UP000037510    UP000235965    UP000008237    UP000053097    UP000279307    UP000078541    UP000078540    UP000005205    UP000053105    UP000000311    UP000053825    UP000007755    UP000075809    UP000245037    UP000005203    UP000242457    UP000036403    UP000076502    UP000027135    UP000002358    UP000054359    UP000007819    UP000015103    UP000076858    UP000215335    UP000001555    UP000192223    UP000245119    UP000001593    UP000030746    UP000015104    UP000007266    UP000076420    UP000050793    UP000009046    UP000001070    UP000050794    UP000267007    UP000265300    UP000038041    UP000274131    UP000252519   

PRIDE

Q1HQ35    A0A088ANN6   

Pfam

PF07200   Mod_r        + More
PF00338   Ribosomal_S10

Interpro

IPR037859   Vps37        + More
IPR037202   ESCRT_assembly_dom       
IPR009851   Mod_r       
IPR029012   Helix_hairpin_bin_sf       
IPR036838   Ribosomal_S10_dom_sf       
IPR027486   Ribosomal_S10_dom       

SUPFAM

SSF140111   SSF140111        + More
SSF54999   SSF54999       

Gene 3D

1.10.287.660     3.30.70.600    

ProteinModelPortal

Q1HQ35   S4PP95   A0A2A4K1H9   A0A2H1V3M7   A0A212FBN9   A0A194R2S4   + More
A0A194Q0R3   A0A437B967   A0A0L7KJR1   A0A2J7PRC9   E2BRL9   A0A026WD83   A0A195F9F8   A0A195BQ30   A0A158N9L5   A0A0M8ZWR8   E2AEC2   A0A0L7R4K0   F4WYF3   A0A151XGR9   A0A2P8YJJ5   A0A088ANN6   A0A2A3EGH0   V9IFP9   A0A0J7KS70   A0A154PQX0   A0A1B6LXJ7   A0A310SFZ2   A0A1B6DTB1   A0A1B6EY16   A0A1B6H6D1   A0A067R2P5   K7J2U2   A0A1E1XA03   A0A1E1XQK2   A0A023GG62   V5IJW9   A0A131XZ43   A0A293MP52   A0A2R5L9X3   A0A224YMG0   A0A131YHR8   L7M6K7   A0A087UWK9   A0A087TJJ2   A0A023FV53   A0A0A9WXQ5   J9K3B3   T1HKF3   A0A0P4VP39   A0A0P5X562   A0A0N8DQ57   A0A232F1X1   B7P7N7   A0A0P4YFT7   A0A0P6IPY1   A0A224XWY3   A0A0P5T9P1   A0A2P6K9C0   A0A1W4XTK8   A0A0P4Y2Q5   A0A0P4VZ89   A0A0P4YQV7   A0A0P5WU99   A0A2L2YMB3   A0A023F1H1   A0A2T7PHA8   A0A0B6ZM02   A0A2P2I333   T1ITX4   A7SWG3   A0A0V0GDB2   V3ZVL8   A0A0K8TLS7   T1KAS4   D2A3L9   A0A2C9LU20   F1LFA0   A0A1Y1LPZ6   A0A183IYE7   E0VHP5   B4JSQ0   A0A0H5SBJ8   A0A183UZT7   A0A0H5SDS6   A0A1S0UAS1   A0A340XLI7   A0A336LJE1   A0A0N4VGQ6   A0A368H2G3  

KEGG

732929    K12185 ESCRT-I complex subunit VPS37 | (RefSeq) Vps37A; vacuolar protein sorting 37 homolog A (S. ce

PATHWAY

04144    Endocytosis - Bombyx mori (domestic silkworm)

GO

GO:0000813   GO:0015031   GO:0032509   GO:0043231   GO:0006612   GO:0043162   GO:0006623   GO:0005761   GO:0005829   GO:0032801  

PANTHER

PTHR13678  

Length:

103

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0

Exp number, first 60 AAs:

0

Total prob of N-in:

0.21211

outside

1  -  103

 

 

Pi

46.949561

Theta

40.623813

Tajima's D

0.478625

CLR

156.643666

CSRT

0.514324283785811

Interpretation

Uncertain