Gene

KWMTBOMO09663  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA012963

Annotation

PREDICTED:_39S_ribosomal_protein_L44?_mitochondrial-like_[Bombyx_mori]

Location

Bomo_Chr16(-):6477488-6480756      View in EpiBrowser

Location in the cell

Cytoplasmic   Reliability : 2.992

CDS

ATGGCACTAATGAGAAGATGTGCTCCGCTTTTTGCTAGGTGTATCAAAATACCACCTATGACTTTACAGAGTCAAAAAATTCATCGATGGGTAGCTCCTACGCTTGTAGAATTAAAGAGGAGAGAAAAAAAGTTAGGCGGAAAGAAAACAAATCCCCGTAACACTTTTCTGGAATGGAATTTGGAGGCTGAACTTTATGCTTTTGGAAAACGTTTGAATGAAGAATTCGACTCGGATTTGTTACTACAAGCGTTTACTGACAGAACTTATATTATAAAGGAAGAAATGAAACAAAAAGAAATGGGAGTAGATATTCCTATGAAGGACAATATGGAGTTGATTGCAGAAGGAGAAAAGTTCATAAATGAATATGTGCAGCTCTACCTAGAGACAGTTTTACCGAAATTTCCATTAGAGGGAGTGAATGAAGTGAGAAATTATCTTACAAATGAGGACAGACTGGCTAAAATCTCCTTGAGTCTGGGAACTAAGGACATCATACTAGCTGCAGAATATCCAGTTGATAATTACATTTTAGCAAACACTTTTAAAGCCATTGTAGCTGCTTTGTTAGAATCAACAAGTGAAGAAAGAGCAGCACATTTTGTGAGAGATTTTGTTATCACACAGTTACAAGGTAAAGATGTGAACGAGTATTGGAACATTGAAGACCCTTGGACTATGCTTACTGGCATCTTAGAAAAAGATGGAAGTAAAGTAGAACCTCGACTAATTGGAGAAGTTGGAAAAAATACGTTACTTGCCTGTTACAGAATTGGCCTTTATGTGAACAAGAAAATGATATCTGAAGGTTTCGGTGAAAAAATTGAAATAGCAAAAGAAATGGCTGCTAGAGAAGCTCTTAAAAGAATATTTGGTACCGAAGATCACATGAAACCTATTAATTTTAAAATTTCTGGTATACCAAAGGGGTCCTCCCAAGAACGTTATCAGATTGCCAGTAATTAA

Protein

MALMRRCAPLFARCIKIPPMTLQSQKIHRWVAPTLVELKRREKKLGGKKTNPRNTFLEWNLEAELYAFGKRLNEEFDSDLLLQAFTDRTYIIKEEMKQKEMGVDIPMKDNMELIAEGEKFINEYVQLYLETVLPKFPLEGVNEVRNYLTNEDRLAKISLSLGTKDIILAAEYPVDNYILANTFKAIVAALLESTSEERAAHFVRDFVITQLQGKDVNEYWNIEDPWTMLTGILEKDGSKVEPRLIGEVGKNTLLACYRIGLYVNKKMISEGFGEKIEIAKEMAAREALKRIFGTEDHMKPINFKISGIPKGSSQERYQIASN

Uniprot

A0A2H1VPZ4   A0A2A4JXT0   A0A1E1VZ71   S4PY42   A0A437B8K2   A0A212FME1   + More
A0A194R2R9   A0A1E1WM95   A0A194PZZ6   A0A1B6DW47   A0A2J7PRF7   U5ES34   A0A067R8Z2   A0A1B0ETK1   C4WUR1   J9JM41   A0A2J7PRF0   A0A1Q3FDZ0   B0WMD0   A0A2H8TQA4   A0A182GX17   A0A2S2PIR6   Q16ZJ3   A0A336LLF6   A0A1B6JY34   A0A1L8DXP2   A0A2S2R1V5   A0A182XBL5   A0A182UUU1   A0A1B6G8Q0   A0A1B0CP42   Q7PYE3   A0A1B6ESP8   A0A1L8DXM3   A0A182I0F1   A0A182QZU8   A0A182VQY1   A0A182YJT9   A0A1J1IM11   A0A1B6MAC5   A0A182UH00   A0A182LUW0   A0A182JQR9   A0A182N5X8   W5J4N7   A0A182PC26   A0A0L0BUM4   A0A182IW67   A0A1I8PDM5   A0A1B0DLK7   A0A0A1WS74   A0A182R1J0   A0A1I8N5K1   A0A182FQK2   A0A2M4APV5   A0A0K8TSF3   A0A2M4AQ62   A0A1A9VPK7   A0A0V0GBN8   A0A069DRK0   D3TMI3   E0VMZ1   A0A0K8UE72   A0A1W4UJH9   A0A1W4UY64   T1I3F3   A0A151ID31   W8C4R2   A0A1A9WDE8   A0A0M4F4I4   B4LZC2   A0A158N9M6   A0A0J7NHB2   A0A034WTV2   A0A0P4VLJ3   A0A0Q9WGN1   B4NB90   E2C0W5   A0A151ISQ9   A0A1A9XU25   A0A146LTI7   A0A0K8TIJ7   B3LZH8   A0A0A9YSG8   B4JHV7   A0A195F8G3   A0A3B0JQF6   Q9VNC1   Q7K141   A0A2P8XUL6   A0A232F227   B4I407   B4QWW0   F4WTR6   A0A1D2MY72   A0A3R7NDS2   A0A195BNK3   A0A026W3R7   B4KD97  

Pubmed

23622113    22118469    26354079    24845553    26483478    17510324    + More
12364791    14747013    17210077    25244985    20920257    23761445    26108605    25830018    25315136    26369729    26334808    20353571    20566863    24495485    17994087    21347285    25348373    27129103    20798317    26823975    25401762    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    29403074    28648823    21719571    27289101    24508170    30249741   

EMBL

ODYU01003753    SOQ42915.1    NWSH01000463    PCG76230.1    GDQN01011103    JAT79951.1    + More
GAIX01003943    JAA88617.1    RSAL01000115    RVE46876.1    AGBW02007651    OWR54934.1    KQ460878    KPJ11545.1    GDQN01003073    JAT87981.1    KQ459582    KPI98902.1    GEDC01007439    JAS29859.1    NEVH01022362    PNF18914.1    GANO01003428    JAB56443.1    KK852622    KDR19986.1    AJWK01010554    AK341177    BAH71631.1    ABLF02036417    PNF18913.1    GFDL01009333    JAV25712.1    DS231997    EDS30987.1    GFXV01003633    MBW15438.1    JXUM01094434    KQ564128    KXJ72728.1    GGMR01016704    MBY29323.1    CH477489    EAT40081.1    UFQT01000043    SSX18786.1    GECU01003598    JAT04109.1    GFDF01002873    JAV11211.1    GGMS01014763    MBY83966.1    GECZ01010944    JAS58825.1    AJWK01021412    AAAB01008987    EAA01591.4    GECZ01029036    JAS40733.1    GFDF01002874    JAV11210.1    APCN01002072    AXCN02000191    CVRI01000051    CRK99505.1    GEBQ01007173    JAT32804.1    AXCM01001692    ADMH02002134    ETN58383.1    JRES01001304    KNC23742.1    AJVK01036466    GBXI01012962    JAD01330.1    GGFK01009493    MBW42814.1    GDAI01000537    JAI17066.1    GGFK01009600    MBW42921.1    GECL01000620    JAP05504.1    GBGD01002344    JAC86545.1    CCAG010002244    EZ422635    ADD18911.1    DS235331    EEB14747.1    GDHF01027664    JAI24650.1    ACPB03023076    KQ977991    KYM98302.1    GAMC01005334    GAMC01005330    JAC01222.1    CP012526    ALC46650.1    CH940650    EDW68157.1    ADTU01009704    LBMM01005014    KMQ91900.1    GAKP01000873    JAC58079.1    GDKW01003063    JAI53532.1    KRF83709.1    CH964232    EDW81054.1    GL451850    EFN78401.1    KQ981064    KYN09902.1    GDHC01008547    GDHC01004895    JAQ10082.1    JAQ13734.1    GBRD01000861    JAG64960.1    CH902617    EDV41920.1    GBHO01009038    JAG34566.1    CH916369    EDV92865.1    KQ981727    KYN36671.1    OUUW01000008    SPP84365.1    AE014297    AAF52025.1    AY069395    AAL39540.2    PYGN01001321    PSN35695.1    NNAY01001280    OXU24508.1    CH480821    EDW54950.1    CM000364    EDX11722.1    GL888344    EGI62381.1    LJIJ01000394    ODM97938.1    QCYY01000537    ROT84453.1    KQ976428    KYM87802.1    KK107502    QOIP01000014    EZA49689.1    RLU14875.1    CH933806    EDW14879.1   

Proteomes

UP000218220    UP000283053    UP000007151    UP000053240    UP000053268    UP000235965    + More
UP000027135    UP000092461    UP000007819    UP000002320    UP000069940    UP000249989    UP000008820    UP000076407    UP000075903    UP000007062    UP000075840    UP000075886    UP000075920    UP000076408    UP000183832    UP000075902    UP000075883    UP000075881    UP000075884    UP000000673    UP000075885    UP000037069    UP000075880    UP000095300    UP000092462    UP000075900    UP000095301    UP000069272    UP000078200    UP000092444    UP000009046    UP000192221    UP000015103    UP000078542    UP000091820    UP000092553    UP000008792    UP000005205    UP000036403    UP000007798    UP000008237    UP000078492    UP000092443    UP000007801    UP000001070    UP000078541    UP000268350    UP000000803    UP000245037    UP000215335    UP000001292    UP000000304    UP000007755    UP000094527    UP000283509    UP000078540    UP000053097    UP000279307    UP000009192   

PRIDE

Q9VNC1    Q7K141   

Pfam

PF14622   Ribonucleas_3_3        + More
PF14765   PS-DH
PF00109   ketoacyl-synt
PF00035   dsrm
PF00636   Ribonuclease_3

Interpro

IPR014720   dsRBD_dom        + More
IPR036389   RNase_III_sf       
IPR000999   RNase_III_dom       
IPR020841   PKS_Beta-ketoAc_synthase_dom       
IPR020807   PKS_dehydratase       
IPR029058   AB_hydrolase       
IPR016039   Thiolase-like       
IPR014030   Ketoacyl_synth_N       
IPR042104   PKS_dehydratase_sf       
IPR023102   Fatty_acid_synthase_dom_2       

SUPFAM

SSF69065   SSF69065        + More
SSF53474   SSF53474       
SSF53901   SSF53901       

Gene 3D

1.10.1520.10     1.10.1470.20     3.10.129.110     3.40.47.10     3.40.50.1820    

CDD

cd00593  RIBOc

ProteinModelPortal

A0A2H1VPZ4   A0A2A4JXT0   A0A1E1VZ71   S4PY42   A0A437B8K2   A0A212FME1   + More
A0A194R2R9   A0A1E1WM95   A0A194PZZ6   A0A1B6DW47   A0A2J7PRF7   U5ES34   A0A067R8Z2   A0A1B0ETK1   C4WUR1   J9JM41   A0A2J7PRF0   A0A1Q3FDZ0   B0WMD0   A0A2H8TQA4   A0A182GX17   A0A2S2PIR6   Q16ZJ3   A0A336LLF6   A0A1B6JY34   A0A1L8DXP2   A0A2S2R1V5   A0A182XBL5   A0A182UUU1   A0A1B6G8Q0   A0A1B0CP42   Q7PYE3   A0A1B6ESP8   A0A1L8DXM3   A0A182I0F1   A0A182QZU8   A0A182VQY1   A0A182YJT9   A0A1J1IM11   A0A1B6MAC5   A0A182UH00   A0A182LUW0   A0A182JQR9   A0A182N5X8   W5J4N7   A0A182PC26   A0A0L0BUM4   A0A182IW67   A0A1I8PDM5   A0A1B0DLK7   A0A0A1WS74   A0A182R1J0   A0A1I8N5K1   A0A182FQK2   A0A2M4APV5   A0A0K8TSF3   A0A2M4AQ62   A0A1A9VPK7   A0A0V0GBN8   A0A069DRK0   D3TMI3   E0VMZ1   A0A0K8UE72   A0A1W4UJH9   A0A1W4UY64   T1I3F3   A0A151ID31   W8C4R2   A0A1A9WDE8   A0A0M4F4I4   B4LZC2   A0A158N9M6   A0A0J7NHB2   A0A034WTV2   A0A0P4VLJ3   A0A0Q9WGN1   B4NB90   E2C0W5   A0A151ISQ9   A0A1A9XU25   A0A146LTI7   A0A0K8TIJ7   B3LZH8   A0A0A9YSG8   B4JHV7   A0A195F8G3   A0A3B0JQF6   Q9VNC1   Q7K141   A0A2P8XUL6   A0A232F227   B4I407   B4QWW0   F4WTR6   A0A1D2MY72   A0A3R7NDS2   A0A195BNK3   A0A026W3R7   B4KD97  

PDB

6GB2     E-value=8.60276e-47,     Score=470

KEGG

101738618    K17425 large subunit ribosomal protein L44 [EC:3.1.26.-] | (RefSeq) 39S ribosomal protein L44, mitoc

GO

GO:0003723   GO:0004525   GO:0006396   GO:0005840   GO:0004312   GO:0030422   GO:0003725   GO:0031053   GO:0031054   GO:0005634   GO:0032543   GO:0005762   GO:0003735   GO:0004222   GO:0006508   GO:0016787   GO:0006730   GO:0009258   GO:0016155   GO:0003824  

Length:

322

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00277

Exp number, first 60 AAs:

0.00018

Total prob of N-in:

0.01946

outside

1  -  322

 

 

Pi

270.366657

Theta

206.487047

Tajima's D

0.998088

CLR

0.24109

CSRT

0.662816859157042

Interpretation

Uncertain