SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO09662
Pre Gene Modal
BGIBMGA014521
Annotation
PREDICTED:_centromere_protein_J_[Papilio_polytes]
Location
Bomo_Chr16(+):6473117-6477382      View in EpiBrowser
Location in the cell
Nuclear   Reliability : 4.094
 

Sequence

CDS
ATGATTGAGGGAGTGACTGTTTTGAACTTATCTCAAGAATCAGAATTTATTGTGAAATCTCCAGCTTCTACAAAAAGTTCGGATTCGCACCTGAAGGTTGATAATGTGAAATTGACACCAAATCCTCCCTTCAGTAATAATAGTGTAAAAATACACTCTGTACAAAGCAAACAAATATCACTGGATGAAATGCCAATACTTTCTCCAAAAAAAGATTTTGAAGGCTTATTAATGGAAAAACTTCACAACAGTAAAGAAGTTCCAGATAGTAAAAGTCCAAAATCCAAAATTGTTCCAGGGATAATAAAAAAGCCTTTTCTGAAAAGAGGAGAAGGCACGGCTAGGTTTGGACTTAATAAAAACGATTTAAAAATTCAAAACACACGCTCACTGCCCTGGAGGCGTAAAAGCTTTGAGACTAAATGTTACCAATCTCCTATAAAGCAAATTAAACAAAATAAAAGGAATGAAATTAAAAAAGTGGCAGATAAACCACAAAGTCTGTGTCTGAAGCCGGAGATATTAGTTAAGCAAAGCAATTCTTTAAAACCAGAAAATGTAGCACATGAAATGAAGAAAGATAGCATTAAAAGTCTTGTAGAATCCAATATTTCTGAAATTCATACTAACAAAACAGGCTCTAACAAAATAACTGAAATACCAAAAGAAAAACACCCCTTTGTTGCAAATAAAGGAAAGACATGGGCCTCTGTTCTAACAAATGAACAGAATGACTTTTTGAGGCAACTTAAGCAAAGTGAATTTTACAAGAACTTTGCTTCTCCAACTAAAAGCTCAGTATCTGATATTAGTTGTAACGAGAGCTTAATCAATATAAGACAGCAAAGAGAAGCAGCTGAGCAAAATATGTTTGAGCTTTTAGAGAACAAGGTCTCTCATGATAGTTTTACATTAGAAAATTCATTTCTTAATAAATTTTTAAAACCCAAGAATCTTGATTCTTCTGGAGAAAGTACTCCTTTGGTCGTACAAAAGTTCATAATGAACAATCCTGCTTTAAGGCATATATCTGCAGGCTTAAGTCTACCAGAGGTTAGTAGTACATATACAGAAATTGATGTTGATAGATGTAGAAGCTATGATTGTACAGAATGTTGTACTGACAATTGTTCTTCTGTATCAACTTGTTGCTCATGTAAAGCTACTGAGCACACTGACGATAATACCTCTTGCAAAACAACTCCTGTACAAATAAAACAGAATCTAAAATCAAAGGAAAAAAAGGTTGACAAAGAAAAAGCAGATAGTTGTCATAATAATGACACTGAACATGACATAATGAAAAACAACTTAGTGGAAATGAATGCCAAATTAGTAAACACAAGTGAACTATTAAAAGAAAGGTTGCAGGAACTAGAAGGTGAAATAGAAATATTTAGAAAGGAAAATTCAAATTTAGCAAAACTTAGAGAAGATATTGATTTAGAGAGACAAAAGTTCTATCAAGAAAAAGCTGCTTTTGAACAAAAGTTTAATGAGGAGAAAATTTTGTCTGAATATTACCTAGCTGAAGAAAAAGAAAAACTAACAAAACAAAAGCAAATGTATGAAAGAAACATAAGAGAAATCAGAGGCAGGTTTAGTAAAAAAGAAAAAGATGAAGTAATCAATCTGAAAAAGGAAATAGAAAGTCTCAAAGAAGAAATAAGAGTTAAAGATGCAAAATCAACATCAACCATAGCTAGACTCCGAAATCAAATTAAGATCATTGAAAAAGAAAAAAAAGACAAGGAGACAACAATAGAAAAATTGAAAAAGGAAAATAAAAGAATTCAACATAGCAATGATATTACAAGGCGTTTATCCAACATGAAATATTTAGCTGAAATAAATAAAAAATTAAAAAATGTGAATCCAAAAGATATTAGATCTGAACCTGATTTAGATGATGATGCAAAGTATAAAGATTTTGAGATAGAAAGACAAAGTAGAAATAAAACTGCTCCAATAGCCAAAAGTAATACAAGACAAAGAGCTAAGAGTGTACCAAACCTAAATGTGTCTTCAGCATATGCCAAATATTTCAGTCAAAGAGATGCTCTTAGTCAAATAGAACAAAATCGGACATTGAATAAGGATAAGATCAATATAAGTTATTCAGATAATGATAATGATTTAGAGGAACTGGAAGATGAACAAGTATCTGACATCCAAGACAATCCAAATGAAAAATCCAACAGTGAAGGTGTAAATAATTTAGAAAAGATTTATTTGCAAACATTTAGATGTAACTCTCCAAAAAGCTTCAGATCAGAAACAGTTATTTTCAATGAAAAGAGTGCAGATGCTACAAAACAAACCAGTTCATCTAGCTTGACAAAAACAAATCTGAATCCAATGGAAATTAAAAGATCAGATGGATCACGGGAATTAAGGTTTCCAAATGGGAATGTTAAACACATATCTGCTGATGGTAAATATAGTAAATTTATTTATTATAATGGTGATGTCAAGGAGAATTTTTACAGTGATGGGATAATCAAATATTATTATGCTGAAACAAAAACATATCACACGACCCATCCAGATGGTTTGGAGGTGCTGGAGTTTCCAGATGGTCAAGTAGAAAAAAGATATAAAGATGGTTCCTCTGAAATACGCTTACCGAATGGCAGTATCCGATATTTCGACCCTAAGAATGAACATGTTCGTGAGGAGTGGAGGTTCCCTGATGGAGCTGCACTCACCATTTCTGCTAGTGGGGAACAACGCATCATTTTTAGTAATGGTCAAATTGAAGTGCATGCAGCAGATCATAAGCGTCGCGAGTTTCCAGATGGTACTGTTAAGCTGGTATATCACGATGGTACTTCTGAGACTCGCTATGCATCAGGACGTATCAGAATAAAGGATAAACACGGAAGTTTGATTATGGACTCTGCACGGAATTGA
Protein
MIEGVTVLNLSQESEFIVKSPASTKSSDSHLKVDNVKLTPNPPFSNNSVKIHSVQSKQISLDEMPILSPKKDFEGLLMEKLHNSKEVPDSKSPKSKIVPGIIKKPFLKRGEGTARFGLNKNDLKIQNTRSLPWRRKSFETKCYQSPIKQIKQNKRNEIKKVADKPQSLCLKPEILVKQSNSLKPENVAHEMKKDSIKSLVESNISEIHTNKTGSNKITEIPKEKHPFVANKGKTWASVLTNEQNDFLRQLKQSEFYKNFASPTKSSVSDISCNESLINIRQQREAAEQNMFELLENKVSHDSFTLENSFLNKFLKPKNLDSSGESTPLVVQKFIMNNPALRHISAGLSLPEVSSTYTEIDVDRCRSYDCTECCTDNCSSVSTCCSCKATEHTDDNTSCKTTPVQIKQNLKSKEKKVDKEKADSCHNNDTEHDIMKNNLVEMNAKLVNTSELLKERLQELEGEIEIFRKENSNLAKLREDIDLERQKFYQEKAAFEQKFNEEKILSEYYLAEEKEKLTKQKQMYERNIREIRGRFSKKEKDEVINLKKEIESLKEEIRVKDAKSTSTIARLRNQIKIIEKEKKDKETTIEKLKKENKRIQHSNDITRRLSNMKYLAEINKKLKNVNPKDIRSEPDLDDDAKYKDFEIERQSRNKTAPIAKSNTRQRAKSVPNLNVSSAYAKYFSQRDALSQIEQNRTLNKDKINISYSDNDNDLEELEDEQVSDIQDNPNEKSNSEGVNNLEKIYLQTFRCNSPKSFRSETVIFNEKSADATKQTSSSSLTKTNLNPMEIKRSDGSRELRFPNGNVKHISADGKYSKFIYYNGDVKENFYSDGIIKYYYAETKTYHTTHPDGLEVLEFPDGQVEKRYKDGSSEIRLPNGSIRYFDPKNEHVREEWRFPDGAALTISASGEQRIIFSNGQIEVHAADHKRREFPDGTVKLVYHDGTSETRYASGRIRIKDKHGSLIMDSARN

Summary

Uniprot
A0A2A4JWN8   A0A2H1X371   A0A194Q0R7   A0A0L7L588   A0A194R1Z5   A0A3S2NBR9   + More
Pubmed
26354079    26227816   
EMBL
NWSH01000463    PCG76229.1    ODYU01013100    SOQ59783.1    KQ459582    KPI98903.1    + More
JTDY01002861    KOB70585.1    KQ460878    KPJ11544.1    RSAL01000115    RVE46875.1   
Proteomes
UP000218220    UP000053268    UP000037510    UP000053240    UP000283053   
Pfam
PF07202   Tcp10_C
Interpro
IPR026581   TCP10_fam        + More
IPR009852   Tcp10_C_dom       
ProteinModelPortal
A0A2A4JWN8   A0A2H1X371   A0A194Q0R7   A0A0L7L588   A0A194R1Z5   A0A3S2NBR9   + More
PDB
4BY2     E-value=2.43579e-51,     Score=515

Ontologies

KEGG
101737275    K11502 centromere protein J | (RefSeq) centromere protein J
GO
PANTHER
PTHR10331  

Topology

Length:
970
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0
Exp number, first 60 AAs:
0
Total prob of N-in:
0.00000
outside
1  -  970
 
 

Population Genetic Test Statistics

Pi
292.722255
Theta
226.324032
Tajima's D
1.018754
CLR
0.260183
CSRT
0.667016649167542
Interpretation
Uncertain
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