SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO09648
Pre Gene Modal
BGIBMGA012972
Annotation
PREDICTED:_ABC_transporter_F_family_member_4-like_[Bombyx_mori]
Location
Bomo_Chr16(-):6153944-6174117      View in EpiBrowser
Location in the cell
Nuclear   Reliability : 3.882
 

Sequence

CDS
ATGCCGATTGGGAACGTCAGCAAAGAGACGGCACCCAGACGGGACAGCTTCAGGCCCCCCTGGGTTAAGGAGAAAGACACAGAGAGTCCACCAGCATGGACTCAGAGGAAGTTGAAGCCTGTGGACAGCTTCGGCAAGACAGCGACCGCGGAGAGCACTGATGCGGCACCTATCACGAAACCTTTAAAACCGGTACTTAAAAAGCAGGTAACAATAAGAGAAAAATCGGAAAACGGTTCATCTGAAACGGTAGAAGAAAAACTAGTTAAGCCTTCAACAGCAAAACAGGCTGATAGAGCAAATAATCCCACAGATGAAAAATCAAGATTTACAAAACCAGCCCTAAAAACTATTGACAAGTCTATCAAATCAGAAGACAAAGTAACCAATGACAAAATTCCGGAAAAATCAACTTTAAAAAGCGTCAGAACTATTGATGACAAAGCAAAAGAAAAATCAGTAACAATTGTTGATAGAAAACCTGATAGAAATGGTACAGATAAAGCAAATAATTCTGTCAATGATAAGATTACAAACGATAAAGGTTCTACTTTGAATAATAATACGAAAACCATCAACAAAGTAGGAGCACCTGAAAAATCAATCTCAAAAACAGTTGCACCGAAATCAAGTCAAACATCTGAAAAGCCTGCACCTAAATCAACTACTGAAAAAAATTCAAAATCACCAGCGGTCGACAAACCTGTTACAAAATCATCTGAAAAACTTACATCGAAAACTACGGCACCTGAAAAACCAGCACCTAAAGAAACATCTCAAAAGCCTGCTGCTCCTGAAAAAACTGAAGAAGTATCCAAGATGGCTACTAAACCTCCCCTTGAAAAAACCCCATCCAAGGTTTTGCGCAAACCGCCTCTTCAAAAACAACCTTCAAAAGATGAAATACAAGTAAAAAAATGGAGGGATCCCCTGCTGGAGCGTGTAAAGGAAAACATTGACAAGACTTTAAATAACGAAGTACCCAAGGGCCACACTTTAACTAAAAATGAAAGTTTAAGAAGTTTGCTAAAACCAACACCACCACCTATGCCACCTCCTTTACCACCAAAGATGCCACCACCTCCGGAGTTCAAGAAAGCACCAGTCGATCCTGCTAAGTTGAAGAGATTGGAGCAGCTCCGAAGCAGGCCAAGGAGGCGGCCTGATTGGAGTGACATGATGAAAGAAGTAGAAGAGGGTAGAAAACTGCGTCACGTTGAATGTAATGACAGATCAAATCCAATAATAACAAGGTCGACCATTGTAAAGAACAAAGGACAATTTATTTTCGAATCTGAAAAACCAAACACGCACAATGAGCTCCTAAAAGAAATCAACAAGGGTATTAAATTGAAGAAAGTAAAAACCAATGACAGGAGTAAACCTAATTTGGAAGGCTTGAGGAAATTCAGAAGACAGATGACTATAGAAGAGCAAGTGCAGAAGTCTATGTCGCAAGCCAATCTCGCGGCGTCGCCTTCGGGAGTACTTGTTCCAGAGGGAGCCGCACCTCAAGAAGAAGAAGAAATTGATGAAATGGACGACATTGACAAAGTCAGAGATGACTTACAATCCACAAAACAGCTGTTGGCTATGGAACTAAGAACAAAAGAAGCACAGGAAAGGGAAATTAAGCGATTACAAACTAGAATACAAAACTTAGAAGCCGAGGTAGCTAGGGAACGCGCTATTATTAAACAAGAACAGCAGAAAACAGTAATATCAGTGACAGATGCCTACGATGAAAGATTAGTTAAAAATCTTAAAGAAGAAGTAGAAAAAGCCAAAGAAAGTGCTGATAACTTAGAAAAGAAATATTTAGAAGCAGCAGAAGAAAGAGATACTGCTATAACAGAGGCAGAAGAACTAAAGAGAAGAAACGCCGAATTAGAAAAGAAATTAGAACAAGCAATGGCCGGTATTATGCCAACAGGTGTGGGTTCGAGACGCTCGAGTCACGCTATCAAACAACTATCAGTTACAAAAGATGACAGTTTTGAAGAAGAATCAGAATCTGAACCGGAGGAGGAGGAAAGTGAAGAAAAGAAACAAAAGAGGCTTGAAAAGGAAGTGAAAAATATGAAAAATAAAATCAAACATTTAAAAGAGAAACAGGACCATATGAAAAAAGAACGTATGGGCTTCAAAATGGCTCTTAAAAATCAACAGGCTGCACTGAAGGAAGAAAAACGTAAATACAAAGAATTGAAGCGTGAAGTTGATAAGATGGCGGCTATGATGAAAGAAGTTGGTTCGGACGAAGAAGAAGAGGAAGAAGAGGAGGAAGAATCCGAAGAAGAAAAGAAGACAGAGTCAGAGGAAGAAGAATCAGAGACTGAAACAGAACAAGACACTGAAAGCGAGACTGAGAGCGAAAGTGAACCAGAAGATGCTCCACTCCCGAACAAAAAAGATAATCTGACAAAGCGAATGAAACGACACGAGACAAGAGTACACGCTTTGAAAAAAGGAAATGCTTTGCTCATGGCCAATGTAGATCGGCTCAAAGACGATGTTTTAAAGCAAAGAGAAGAATCTGTGTCGTTACAAAAGGAGCTTGACTCTCTAATTGATGATCTTGAGTAA
Protein
MPIGNVSKETAPRRDSFRPPWVKEKDTESPPAWTQRKLKPVDSFGKTATAESTDAAPITKPLKPVLKKQVTIREKSENGSSETVEEKLVKPSTAKQADRANNPTDEKSRFTKPALKTIDKSIKSEDKVTNDKIPEKSTLKSVRTIDDKAKEKSVTIVDRKPDRNGTDKANNSVNDKITNDKGSTLNNNTKTINKVGAPEKSISKTVAPKSSQTSEKPAPKSTTEKNSKSPAVDKPVTKSSEKLTSKTTAPEKPAPKETSQKPAAPEKTEEVSKMATKPPLEKTPSKVLRKPPLQKQPSKDEIQVKKWRDPLLERVKENIDKTLNNEVPKGHTLTKNESLRSLLKPTPPPMPPPLPPKMPPPPEFKKAPVDPAKLKRLEQLRSRPRRRPDWSDMMKEVEEGRKLRHVECNDRSNPIITRSTIVKNKGQFIFESEKPNTHNELLKEINKGIKLKKVKTNDRSKPNLEGLRKFRRQMTIEEQVQKSMSQANLAASPSGVLVPEGAAPQEEEEIDEMDDIDKVRDDLQSTKQLLAMELRTKEAQEREIKRLQTRIQNLEAEVARERAIIKQEQQKTVISVTDAYDERLVKNLKEEVEKAKESADNLEKKYLEAAEERDTAITEAEELKRRNAELEKKLEQAMAGIMPTGVGSRRSSHAIKQLSVTKDDSFEEESESEPEEEESEEKKQKRLEKEVKNMKNKIKHLKEKQDHMKKERMGFKMALKNQQAALKEEKRKYKELKREVDKMAAMMKEVGSDEEEEEEEEEESEEEKKTESEEEESETETEQDTESETESESEPEDAPLPNKKDNLTKRMKRHETRVHALKKGNALLMANVDRLKDDVLKQREESVSLQKELDSLIDDLE

Summary

Uniprot
H9JTW0   A0A2A4K2Z0   A0A194R1Y0   A0A194Q026   A0A3S2NSL4   A0A2H1VBZ5   + More
A0A1E1WL19   A0A212FMN7   A0A0L7LQ07  
Pubmed
19121390    26354079    22118469    26227816   
EMBL
BABH01003675    NWSH01000252    PCG78012.1    KQ460878    KPJ11529.1    KQ459582    + More
KPI98916.1    RSAL01000102    RVE47451.1    ODYU01001490    SOQ37764.1    GDQN01003437    JAT87617.1    AGBW02007651    OWR54949.1    JTDY01000421    KOB77271.1   
Proteomes
UP000005204    UP000218220    UP000053240    UP000053268    UP000283053    UP000007151    + More
UP000037510   
PRIDE
H9JTW0   
Pfam
PF02205   WH2
Interpro
IPR003124   WH2_dom       
ProteinModelPortal
H9JTW0   A0A2A4K2Z0   A0A194R1Y0   A0A194Q026   A0A3S2NSL4   A0A2H1VBZ5   + More
A0A1E1WL19   A0A212FMN7   A0A0L7LQ07  

Ontologies

KEGG
101739319    no KO assigned | (RefSeq) ABC transporter F family member 4-like
GO
GO:0003779   GO:0016614   GO:0050660   GO:0006413   GO:0031369   GO:0003723   GO:0006730   GO:0009258   GO:0016155   GO:0003824  

Topology

Length:
861
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0
Exp number, first 60 AAs:
0
Total prob of N-in:
0.00002
outside
1  -  861
 
 

Population Genetic Test Statistics

Pi
257.413709
Theta
183.723817
Tajima's D
0.998771
CLR
0
CSRT
0.652267386630669
Interpretation
Uncertain
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