Gene

KWMTBOMO09643  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA012860

Annotation

heterochromatin_protein_1beta-like_protein_[Bombyx_mori]

Location

Bomo_Chr16(+):5993664-5998852      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 2.84

CDS

ATGGCCGACAAGAAAAAAGAAAACGAACCAGAAGCCGAAGAGGAATTTTCTGTTGAAAAAGTTCTGGACAGGCGCATTAAGAATGGTGTTTTGGAATATTACTTGAAATGGAAAGGATACAGTGATGAAGATAATACATGGGAACCAGAGGATAATCTTGATTGTCCAGATCTTATACAAGCCTTTGAAGAAGCAAGAAAGAAGAAAGAAGCTGAGGGAAAAATGTCAAAAACTGATAAGGATTCAAAGAAGCGTAAATCAGCCGCAGCCACACCTGATCTCAAAGGTGCAAAGAAAGCCAAAAGTGATGACAAGAAAGCATCTGGTTTTGATCGTGGATTAGAACCAGAAAAAATAATTGGCGCTACGGATAGTAGTGGTGAACTCATGTTCCTCATGAAATGGCAAGGAACAGATGAAGCAGATCTTGTACCAGCAAAACAAGCTAATGTGCGGTGCCCACAAGTAGTTATTCAATTTTATGAAGAAAGGCTCACATGGCACACACCAGCACTCGATGAAGGAAATAATGAAGACTAA

Protein

MADKKKENEPEAEEEFSVEKVLDRRIKNGVLEYYLKWKGYSDEDNTWEPEDNLDCPDLIQAFEEARKKKEAEGKMSKTDKDSKKRKSAAATPDLKGAKKAKSDDKKASGFDRGLEPEKIIGATDSSGELMFLMKWQGTDEADLVPAKQANVRCPQVVIQFYEERLTWHTPALDEGNNED

Uniprot

C8KIP4   H9JTJ8   A0A3S2NL22   S4PWP7   A0A212FMI2   A0A194Q684   + More
A0A194RSL3   I4DN34   A0A2H1V4I1   A0A2A4JKQ5   A0A2A4JJ99   S4PC48   A0A1B6FZJ5   A0A347ZJG3   A0A2J7RIV1   A0A067R9C5   A0A1B0DE28   A0A2J7R671   A0A2J7R674   A0A067QLM3   A0A1L8DWJ0   A0A0M9A201   A0A1B6CEI5   A0A1I8NQC1   A0A1B6MQ55   A0A0P4WIK1   A0A0P4WM05   A0A2A3EKZ9   V9IB81   A0A1B6JML9   A0A0C9R3B6   A0A1B6ELN8   T1PHJ7   A0A226EP32   A0A1B6HD82   E9IRS4   A0A1B6LSM8   A0A158NU29   A0A151I4U7   A0A088AKG8   A0A195C995   A0A195FK68   E2AQB3   A0A3B3SZD9   A0A151WZZ8   A0A195DKQ7   F0J9Z4   E2BYS3   A0A3B3SY01   A0A0K8TNQ0   A0A154PRV3   A0A1W4WZ02   A0A336LML9   D2A509   A0A232F397   K7ILX1   A0A1W5AG13   A0A0U2IG58   A0A026X2N7   A0A1B0G681   A0A1A9VNY3   A0A1A9Z525   A0A1A9X896   A0A1B0C403   E0VK99   A0A1A9W474   A0A1J1J077   A0A0P7X573   A0A2J7QYJ5   A0A444TFM6   Q1KL08   S4RI58   W8BS36   A0A088FNU8   H2UUK9   A0A1A9Z822   A0A1B0BE42   A0A0P7TKJ7   A0A0C9R955   A0A0K8V5P0   A0A034VPH9   A0A1W4Z1I8   A0A1A9UCT1   A0A402FKD4   A0A1B0FQL4   A0A1Y1MRX1   A0A1E1X270   A0A1Y1MTA7   G1KFI8   A0A224YLU2   A0A131YEL4   H3ARE6   A0A1L8ES11   F6QIP4   A0A224YVB6   A0A131YNY8   L7M6U3   W5N7D5   A0A3B3RA38   D2H560  

Pubmed

19121390    23622113    22118469    26354079    22651552    24845553    + More
25315136    21282665    21347285    20798317    29240929    21362191    26369729    18362917    19820115    28648823    20075255    26621068    24508170    30249741    20566863    16636282    24495485    24974377    21551351    25348373    28004739    28503490    28797301    26830274    9215903    27762356    20431018    25576852    20010809   

EMBL

AB521135    BAI39587.1    BABH01003688    RSAL01000051    RVE50306.1    GAIX01006418    + More
JAA86142.1    AGBW02007651    OWR54955.1    KQ459582    KPI98920.1    KQ459700    KPJ20335.1    AK402702    BAM19324.1    ODYU01000635    SOQ35748.1    NWSH01001194    PCG72174.1    PCG72175.1    GAIX01005642    JAA86918.1    GECZ01014167    JAS55602.1    FX985731    BBA84469.1    NEVH01003069    PNF40759.1    KK852617    KDR20165.1    AJVK01032485    NEVH01006980    PNF36328.1    PNF36329.1    KK853191    KDR10033.1    GFDF01003296    JAV10788.1    KQ435759    KOX75665.1    GEDC01025451    JAS11847.1    GEBQ01026253    GEBQ01007435    GEBQ01001958    JAT13724.1    JAT32542.1    JAT38019.1    GDRN01030533    JAI67548.1    GDRN01030535    GDRN01030534    JAI67547.1    KZ288217    PBC32397.1    JR038646    JR038647    AEY58354.1    AEY58355.1    GECU01007228    JAT00479.1    GBYB01007272    JAG77039.1    GECZ01030932    GECZ01011658    JAS38837.1    JAS58111.1    KA648154    AFP62783.1    LNIX01000003    OXA58571.1    GECU01035060    GECU01005654    JAS72646.1    JAT02053.1    GL765283    EFZ16680.1    GEBQ01032128    GEBQ01019736    GEBQ01013302    JAT07849.1    JAT20241.1    JAT26675.1    ADTU01026248    KQ976445    KYM86037.1    KQ978143    KYM96741.1    KQ981522    KYN40657.1    GL441721    EFN64371.1    KQ982638    KYQ53281.1    KQ980794    KYN13074.1    BK007695    DAA34563.1    GL451506    EFN79173.1    GDAI01002063    JAI15540.1    KQ435095    KZC14632.1    UFQS01002959    UFQS01004988    UFQT01002959    UFQT01004988    SSX14962.1    SSX16648.1    SSX34349.1    KQ971361    EFA05151.1    NNAY01001122    OXU25052.1    KT754521    ALS04355.1    KK107054    QOIP01000004    EZA61624.1    RLU23959.1    CCAG010011796    JXJN01025212    DS235241    EEB13805.1    CVRI01000065    CRL05799.1    JARO02002757    KPP71971.1    NEVH01009087    PNF33652.1    SAUD01003051    RXG68784.1    DQ481663    ABF22386.1    GAMC01014526    GAMC01014525    JAB92029.1    KM102159    AIM47957.1    JXJN01012777    JARO02014542    KPP58148.1    GBYB01004675    JAG74442.1    GDHF01018236    GDHF01007646    JAI34078.1    JAI44668.1    GAKP01015269    GAKP01015267    JAC43685.1    BDOT01000298    GCF56727.1    CCAG010008844    GEZM01026113    JAV87235.1    GFAC01006057    JAT93131.1    GEZM01026112    JAV87236.1    GFPF01006769    MAA17915.1    GEDV01011625    JAP76932.1    AFYH01023021    AFYH01023022    CM004482    OCT62134.1    AAMC01075965    GFPF01006768    MAA17914.1    GEDV01008407    JAP80150.1    GACK01006205    JAA58829.1    AHAT01031041    AHAT01031042    GL192497    EFB19958.1   

Proteomes

UP000005204    UP000283053    UP000007151    UP000053268    UP000053240    UP000218220    + More
UP000235965    UP000027135    UP000092462    UP000053105    UP000095300    UP000242457    UP000095301    UP000198287    UP000005205    UP000078540    UP000005203    UP000078542    UP000078541    UP000000311    UP000261540    UP000075809    UP000078492    UP000008237    UP000076502    UP000192223    UP000007266    UP000215335    UP000002358    UP000192224    UP000053097    UP000279307    UP000092444    UP000078200    UP000092445    UP000092443    UP000092460    UP000009046    UP000091820    UP000183832    UP000034805    UP000288706    UP000245300    UP000005226    UP000288954    UP000001646    UP000008672    UP000186698    UP000008143    UP000018468   

PRIDE

C8KIP4    H9JTJ8   

Pfam

PF01393   Chromo_shadow        + More
PF00385   Chromo

Interpro

IPR016197   Chromo-like_dom_sf        + More
IPR017984   Chromo_dom_subgr       
IPR023780   Chromo_domain       
IPR023779   Chromodomain_CS       
IPR008251   Chromo_shadow_dom       
IPR000953   Chromo/chromo_shadow_dom       
IPR038033   CBX3       
IPR016024   ARM-type_fold       

SUPFAM

SSF54160   SSF54160        + More
SSF48371   SSF48371       

CDD

cd00024  CHROMO

ProteinModelPortal

C8KIP4   H9JTJ8   A0A3S2NL22   S4PWP7   A0A212FMI2   A0A194Q684   + More
A0A194RSL3   I4DN34   A0A2H1V4I1   A0A2A4JKQ5   A0A2A4JJ99   S4PC48   A0A1B6FZJ5   A0A347ZJG3   A0A2J7RIV1   A0A067R9C5   A0A1B0DE28   A0A2J7R671   A0A2J7R674   A0A067QLM3   A0A1L8DWJ0   A0A0M9A201   A0A1B6CEI5   A0A1I8NQC1   A0A1B6MQ55   A0A0P4WIK1   A0A0P4WM05   A0A2A3EKZ9   V9IB81   A0A1B6JML9   A0A0C9R3B6   A0A1B6ELN8   T1PHJ7   A0A226EP32   A0A1B6HD82   E9IRS4   A0A1B6LSM8   A0A158NU29   A0A151I4U7   A0A088AKG8   A0A195C995   A0A195FK68   E2AQB3   A0A3B3SZD9   A0A151WZZ8   A0A195DKQ7   F0J9Z4   E2BYS3   A0A3B3SY01   A0A0K8TNQ0   A0A154PRV3   A0A1W4WZ02   A0A336LML9   D2A509   A0A232F397   K7ILX1   A0A1W5AG13   A0A0U2IG58   A0A026X2N7   A0A1B0G681   A0A1A9VNY3   A0A1A9Z525   A0A1A9X896   A0A1B0C403   E0VK99   A0A1A9W474   A0A1J1J077   A0A0P7X573   A0A2J7QYJ5   A0A444TFM6   Q1KL08   S4RI58   W8BS36   A0A088FNU8   H2UUK9   A0A1A9Z822   A0A1B0BE42   A0A0P7TKJ7   A0A0C9R955   A0A0K8V5P0   A0A034VPH9   A0A1W4Z1I8   A0A1A9UCT1   A0A402FKD4   A0A1B0FQL4   A0A1Y1MRX1   A0A1E1X270   A0A1Y1MTA7   G1KFI8   A0A224YLU2   A0A131YEL4   H3ARE6   A0A1L8ES11   F6QIP4   A0A224YVB6   A0A131YNY8   L7M6U3   W5N7D5   A0A3B3RA38   D2H560  

PDB

5T1G     E-value=1.14746e-24,     Score=276

KEGG

100307007    K11585 chromobox protein 1 | (RefSeq) Hp1b-l; heterochromatin protein 1beta-like protein

GO

GO:0045892   GO:0005719   GO:0005634   GO:1990226   GO:0010369   GO:0001939   GO:0005819   GO:0042803   GO:0090734   GO:0001940   GO:0000784   GO:0006974   GO:0005721   GO:0005524   GO:0006468   GO:0006413   GO:0031369   GO:0003723   GO:0006730   GO:0009258   GO:0016155   GO:0003824  

PANTHER

PTHR22812:SF134  

Subcellular location

Nucleus  

Length:

179

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0

Exp number, first 60 AAs:

0

Total prob of N-in:

0.27682

outside

1  -  179

 

 

Pi

24.713434

Theta

22.255719

Tajima's D

0.044696

CLR

0.987367

CSRT

0.389130543472826

Interpretation

Uncertain