SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO09641  Validated by peptides from experiments
Pre Gene Modal
BGIBMGA012859
Annotation
NIPSNAP_protein_[Bombyx_mori]
Full name
Protein NipSnap      
Location in the cell
Mitochondrial   Reliability : 2.543
 

Sequence

CDS
ATGAATTCCCTTAATAAGTTATCAGTTTATAGTAAATTAGTGCCGAAAAATGCCAGGGTGATATCTACAAGTGCACTATTAAACACTGACGATGGATGGTTTTCGAAATTACTAGTTCGAAGAATCGAACCGACAAAAGAGTCACACAGTCGAATGCTTAGTGACAAGGAAGTAATTTATGCTCTTCATACACACAACATAAGACCGGATTCAGTGGACAACTATTTAAAAAATTACAAGCAGCATGTAGATCTAATACATTCACACAAAGCAGAACTTGGTTGTGAGCTTGTAGGATCATGGACAGTATCAGTTGGAGATATGGATCAAGCTCTGCATTTATTCAAATATGTTGGTGGATTTGAAAAAATTGACAAGGCCAAACAATTGTTTAAACAAGATTCTAGTTACCAATTGCTAGAAAGTGAGAGAGGCAAAATGGTCAGGTCCAGACATCTCCAATACTTGCTAGCTTTCAGCTTTTGGCCAGCTGGAGAAGTACGGTCTCCCAACAACATCTACGAAATACGATCATACAGTTTAAAACCTGGAACTATGATTGAGTGGGGTAACAATTGGGCGCGTGGCCTTACTTACCGACGCGCGCAAAACGAGGCGTTTGCGGGCTATTTCTCACAAATTGGCCGATTATACAATGTTCATCATATTTGGTGCTATAAAGATTTGCAAGCTCGTCGTGAAACTAGAGAGAGTACATGGCGTAATCCAGGCTGGGATGAGTGTGTCGCGTACACGGTGCCTCTGATCAGAGAGATGCACTGTCGTATCTTAGAACCCACTGAATTCTCTCCTACACAATAA
Protein
MNSLNKLSVYSKLVPKNARVISTSALLNTDDGWFSKLLVRRIEPTKESHSRMLSDKEVIYALHTHNIRPDSVDNYLKNYKQHVDLIHSHKAELGCELVGSWTVSVGDMDQALHLFKYVGGFEKIDKAKQLFKQDSSYQLLESERGKMVRSRHLQYLLAFSFWPAGEVRSPNNIYEIRSYSLKPGTMIEWGNNWARGLTYRRAQNEAFAGYFSQIGRLYNVHHIWCYKDLQARRETRESTWRNPGWDECVAYTVPLIREMHCRILEPTEFSPTQ

Summary

Similarity
Belongs to the NipSnap family.
Keywords
Complete proteome   Reference proteome  
Feature
chain  Protein NipSnap
EMBL
DQ311201    ABD36146.1    ODYU01002803    SOQ40750.1    NWSH01001194    PCG72166.1    + More
KQ459582    KPI98924.1    KQ459700    KPJ20340.1    AGBW02007651    OWR54957.1    RSAL01000051    RVE50304.1    GAIX01005082    JAA87478.1    JTDY01003286    KOB69800.1    LBMM01001097    KMQ96930.1    GL441177    EFN65056.1    GL766449    EFZ15215.1    KK107260    QOIP01000001    EZA54016.1    RLU27073.1    KQ982651    KYQ52858.1    GL888262    EGI63677.1    KQ976434    KYM87223.1    ADTU01003011    KQ979074    KYN22882.1    CH964239    EDW82251.1    KQ981799    KYN35666.1    CH916370    EDW00455.1    NNAY01000455    OXU28281.1    CM000366    EDX18059.1    GANO01002615    JAB57256.1    GFDG01001829    JAV16970.1    GBYB01006220    JAG75987.1    CH940672    EDW57442.1    KRF77770.1    AE014298    AHN59786.1    AY061048    AJ249798    KQ978464    KYM93772.1    CH480862    EDW52823.1    GFDG01003227    JAV15572.1    CH933814    KRG07511.1    EDW05741.1    KRG07512.1    KRG07510.1    OUUW01000038    SPP89887.1    CH479201    EDW29950.1    AXCM01004774    CH954180    EDV46912.1    KQS30243.1    CH379064    EAL32109.1    KRT06915.1    GEDC01030241    GEDC01023756    GEDC01019150    GEDC01004970    GEDC01001475    JAS07057.1    JAS13542.1    JAS18148.1    JAS32328.1    JAS35823.1    EZ422731    ADD19007.1    GAMC01002478    JAC04078.1    JXJN01025869    GBXI01012172    JAD02120.1    CM000162    EDX01878.1    KRK06410.1    GDHF01009091    GDHF01005223    JAI43223.1    JAI47091.1    GAKP01004885    JAC54067.1    GBYB01007517    JAG77284.1    GGFM01002894    MBW23645.1    AAAB01008879    EAA44790.3    KK853319    KDR08564.1    GGFM01002911    MBW23662.1    GGFK01006670    MBW39991.1    GDAI01001640    JAI15963.1    GECZ01026476    JAS43293.1    GGFJ01008190    MBW57331.1    GGFK01006725    MBW40046.1    GGFJ01008191    MBW57332.1    GFDF01003403    JAV10681.1    GAMD01002640    JAA98950.1    ADMH02001488    ETN62372.1    AXCN02000180    GEBQ01006158    JAT33819.1    APCN01002131    ATLV01004128    KE524190    KFB34995.1    JXUM01110641    GAPW01003227    KQ565430    JAC10371.1    KXJ70984.1    GGFK01008191    MBW41512.1    GFDL01008120    JAV26925.1    CH477188    EAT48786.1    GFDF01003420    JAV10664.1    DS232303    EDS39488.1    UFQS01000045    UFQT01000045    SSW98423.1    SSX18809.1    GBBI01001222    JAC17490.1    ACPB03020346    GAHY01001894    JAA75616.1    AK417318    BAN20533.1    GBGD01002413    JAC86476.1    DS235451    EEB15870.1    GEZM01085934    JAV59878.1   
Pfam
PF07978   NIPSNAP
Interpro
IPR011008   Dimeric_a/b-barrel        + More
IPR012577   NIPSNAP       
SUPFAM
SSF54909   SSF54909       
PDB
5KAK     E-value=1.11188e-07,     Score=132

Ontologies

Topology

Length:
273
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.00916
Exp number, first 60 AAs:
0.00122
Total prob of N-in:
0.03569
outside
1  -  273
 
 

Population Genetic Test Statistics

Pi
285.192734
Theta
215.287814
Tajima's D
0.987479
CLR
0.020672
CSRT
0.654717264136793
Interpretation
Uncertain
Peptides ×
Source Sequence Identity Evalue
28556443 QDSSYQLLESER 100.00 4e-07
28556443 QDSSYQLLESER 100.00 4e-07
26822097 SPNNIYEIR 100.00 8e-05
26280517 AQMTDYDR 100.00 8e-05
25044914 AQMYSVEYGAAIPPAYPWPDNQPR 100.00 8e-05
27102218 SPNNIYEIR 100.00 8e-05
28467696 AQMTDYDRFK 100.00 8e-05
28556443 AQNEAFAGYFSQIGR 100.00 8e-05
28556443 SYSLKPGTMIEWGNNWAR 100.00 8e-05
28556443 GCCNACEKPIVGQVITALGR 100.00 8e-05
Copyright@ 2018-2023    Any Comments and suggestions mail to:zhuzl@cqu.edu.cn   渝ICP备19006517号

渝公网安备 50010602502065号