Gene

KWMTBOMO09636  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA012857

Annotation

PREDICTED:_cytochrome_b-c1_complex_subunit_6?_mitochondrial-like_[Papilio_xuthus]

Location

Bomo_Chr16(+):5890644-5893160      View in EpiBrowser

Full name

Cytochrome b-c1 complex subunit 6      

Location in the cell

Nuclear   Reliability : 2.719

CDS

ATGTCTGACAAATTCGTTCCCGTGGTTAAGGCAGAGGAAACAGAGGAGGAGGAGTTGGTGGATCCGCAGCAGTCTCTTAGGGAAGAGTGTTCCCAAAAGCCTGATGCCCAAAACATGTGGGCTAAATATCAAGAGTGCAATGATCGTGTAAACTCCAGATCTAAAACTGCAGAAACCTGTGAAGAAGAACTCATTGACTATGTCCATGTTCTTGACAAATGCGTCACCAAGGACTTGTTTAAGAGGCTAAAGTAA

Protein

MSDKFVPVVKAEETEEEELVDPQQSLREECSQKPDAQNMWAKYQECNDRVNSRSKTAETCEEELIDYVHVLDKCVTKDLFKRLK

Description

This is a component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is part of the mitochondrial respiratory chain. This protein may mediate formation of the complex between cytochromes c and c1.

Similarity

Belongs to the UQCRH/QCR6 family.

Feature

chain  Cytochrome b-c1 complex subunit 6

Uniprot

H9JTJ5   I4DLG5   A0A194RSM2   A0A3S2NW40   A0A212FMK8   A0A2H1V8E7   + More
A0A2A4IUL1   Q8I918   A0A1J1J0J6   A0A1L8E172   A0A1L8E1M2   A0A182JT57   A0A182TRP9   A0A182PCR4   A0A084VB95   A0A182UTD1   A0A182X395   Q7QKB0   A0A182HZG5   A0A182RH43   A0A182J7M4   A0A1B0CI53   A0A182G8T6   A0A023EDZ6   A0A182M5A1   A0A182Y4P9   D2A452   A0A0M5J1V2   A0A1L8EIF1   A0A026W4P0   Q1HR18   J9HJ41   A0A2J7QH09   A0A0K8TTF0   A0A182VQ30   T1DDV3   A0A3B0K295   B4NIW8   A0A182NMP4   A0A182FSW5   B4LVY4   F4X8N7   A0A0P8XD53   A0A0Q5WBY1   A0A182QFR2   B3MTL1   A0A0L0C744   B5DVQ3   A0A2M3Z8R6   T1E1V6   W8CBP8   B4GM97   A0A1I8MK27   T1DPZ2   A0A2M4AE75   A0A2M4C4R1   A0A2M4C5V4   A0A1W4UKB7   A0A1Q3FKW2   B3P244   W5J465   B4K4H5   B0WLN6   B4PT18   A0A1A9W882   A0A0R1DPD7   A0A1A9UN43   A0A336LZS3   A0A1B0AA60   A0A0M5J7P8   A0A1I8P257   A0A1A9XHP9   A0A1B0B9M0   A0A0J9R856   Q4QPY6   B4ILS1   B4NTK4   B4JYT5   A0A2P8Z8V5   A0A151IGX8   J3JVD7   L7MKY7   A0A195BAK9   A0A158NBI8   A8Y535   A0A1W4W0S7   D2NUK7   E2A9F7   N6SVI7   A0A0L7RER5   A0A195DSA3   A0A195FDZ1   A0A131XJY4   A0A067RRN8   A0A0J7KQ30   A0A1Y1N2F7   A0A2A3EHV8   E2C3Y6   A0A088AFT4   A0A1V9XQ00  

Pubmed

19121390    22651552    26354079    22118469    24438588    12364791    + More
14747013    17210077    26483478    24945155    25244985    18362917    19820115    24508170    30249741    17204158    17510324    26369729    24330624    17994087    21719571    26108605    15632085    23185243    24495485    25315136    20920257    23761445    18057021    17550304    22936249    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    29403074    22516182    25576852    21347285    20798317    23537049    28049606    24845553    28004739    28327890   

EMBL

BABH01003695    AK402133    KQ459582    BAM18755.1    KPI98930.1    KQ459700    + More
KPJ20345.1    RSAL01000051    RVE50302.1    AGBW02007651    OWR54963.1    ODYU01001199    SOQ37087.1    NWSH01006093    PCG63667.1    AY071867    EF635220    AAL60593.1    ABU96711.1    CVRI01000066    CRL05856.1    GFDF01001688    JAV12396.1    GFDF01001679    JAV12405.1    ATLV01006109    KE524339    KFB35239.1    AAAB01008799    EAA03739.5    APCN01001975    AJWK01013041    JXUM01043531    JXUM01048232    KQ561553    KQ561365    KXJ78181.1    KXJ78836.1    GAPW01006582    JAC07016.1    AXCM01000279    KQ971348    EFA05661.1    CP012523    ALC39711.1    GFDG01000365    JAV18434.1    KK107453    QOIP01000004    EZA50561.1    RLU23452.1    DQ440276    CH477694    ABF18309.1    EAT37180.1    EJY57884.1    NEVH01014358    PNF27867.1    GDAI01000167    JAI17436.1    GALA01001307    JAA93545.1    OUUW01000014    SPP88354.1    CH964272    EDW84870.1    CH940650    EDW66489.1    GL888932    EGI57306.1    CH902623    KPU72689.1    CH954177    KQS70870.1    AXCN02001211    EDV30142.1    JRES01000826    KNC28061.1    CM000070    EDY68461.1    GGFM01004141    MBW24892.1    GALA01001334    JAA93518.1    GAMC01000304    JAC06252.1    CH479185    EDW37971.1    GAMD01002904    JAA98686.1    GGFK01005729    MBW39050.1    GGFJ01011205    MBW60346.1    GGFJ01011207    MBW60348.1    GFDL01006795    JAV28250.1    CH954181    EDV47722.1    ADMH02002125    ETN58656.1    CH933806    EDW13927.1    KRG00732.1    DS231988    EDS30578.1    CM000160    EDW95607.1    CM000157    KRJ98381.1    UFQT01000367    SSX23586.1    CP012526    ALC47944.1    JXJN01010481    CM002911    KMY92312.1    AE013599    BT023630    KX531341    AAM68831.1    AAY85030.1    ANY27151.1    CH480886    EDW55363.1    CH983192    CM002910    CM002912    EDX15662.1    KMY91453.1    KMY91536.1    KMY91539.1    KMY91543.1    KMZ01322.1    CH916378    EDV98550.1    PYGN01000144    PSN52930.1    KQ977661    KYN00703.1    BT127204    AEE62166.1    GACK01001086    JAA63948.1    KQ976540    KYM81255.1    ADTU01011115    AE014296    EDP28072.2    BT120150    ADB57071.1    GL437855    EFN69930.1    APGK01054966    APGK01054970    KB741256    ENN71745.1    ENN71759.1    KQ414609    KOC69333.1    KQ980581    KYN15399.1    KQ981673    KYN38244.1    GEFH01002076    JAP66505.1    KK852507    KDR22439.1    LBMM01004467    KMQ92386.1    GEZM01014679    JAV92042.1    KZ288254    PBC30852.1    GL452364    EFN77372.1    MNPL01006170    OQR75574.1   

Proteomes

UP000005204    UP000053268    UP000053240    UP000283053    UP000007151    UP000218220    + More
UP000183832    UP000075881    UP000075902    UP000075885    UP000030765    UP000075903    UP000076407    UP000007062    UP000075840    UP000075900    UP000075880    UP000092461    UP000069940    UP000249989    UP000075883    UP000076408    UP000007266    UP000092553    UP000053097    UP000279307    UP000008820    UP000235965    UP000075920    UP000268350    UP000007798    UP000075884    UP000069272    UP000008792    UP000007755    UP000007801    UP000008711    UP000075886    UP000037069    UP000001819    UP000008744    UP000095301    UP000192221    UP000000673    UP000009192    UP000002320    UP000002282    UP000091820    UP000078200    UP000092445    UP000095300    UP000092443    UP000092460    UP000000803    UP000001292    UP000000304    UP000001070    UP000245037    UP000078542    UP000078540    UP000005205    UP000000311    UP000019118    UP000053825    UP000078492    UP000078541    UP000027135    UP000036403    UP000242457    UP000008237    UP000005203    UP000192247   

PRIDE

H9JTJ5    Q4QPY6    D2NUK7   

Pfam

PF02320   UCR_hinge

Interpro

IPR036811   Ubol_cytC_Rdtase_hinge_dom_sf        + More
IPR003422   Cyt_b-c1_6       
IPR023184   Ubol_cytC_Rdtase_hinge_dom       

SUPFAM

SSF81531   SSF81531       

Gene 3D

1.10.287.20    

ProteinModelPortal

H9JTJ5   I4DLG5   A0A194RSM2   A0A3S2NW40   A0A212FMK8   A0A2H1V8E7   + More
A0A2A4IUL1   Q8I918   A0A1J1J0J6   A0A1L8E172   A0A1L8E1M2   A0A182JT57   A0A182TRP9   A0A182PCR4   A0A084VB95   A0A182UTD1   A0A182X395   Q7QKB0   A0A182HZG5   A0A182RH43   A0A182J7M4   A0A1B0CI53   A0A182G8T6   A0A023EDZ6   A0A182M5A1   A0A182Y4P9   D2A452   A0A0M5J1V2   A0A1L8EIF1   A0A026W4P0   Q1HR18   J9HJ41   A0A2J7QH09   A0A0K8TTF0   A0A182VQ30   T1DDV3   A0A3B0K295   B4NIW8   A0A182NMP4   A0A182FSW5   B4LVY4   F4X8N7   A0A0P8XD53   A0A0Q5WBY1   A0A182QFR2   B3MTL1   A0A0L0C744   B5DVQ3   A0A2M3Z8R6   T1E1V6   W8CBP8   B4GM97   A0A1I8MK27   T1DPZ2   A0A2M4AE75   A0A2M4C4R1   A0A2M4C5V4   A0A1W4UKB7   A0A1Q3FKW2   B3P244   W5J465   B4K4H5   B0WLN6   B4PT18   A0A1A9W882   A0A0R1DPD7   A0A1A9UN43   A0A336LZS3   A0A1B0AA60   A0A0M5J7P8   A0A1I8P257   A0A1A9XHP9   A0A1B0B9M0   A0A0J9R856   Q4QPY6   B4ILS1   B4NTK4   B4JYT5   A0A2P8Z8V5   A0A151IGX8   J3JVD7   L7MKY7   A0A195BAK9   A0A158NBI8   A8Y535   A0A1W4W0S7   D2NUK7   E2A9F7   N6SVI7   A0A0L7RER5   A0A195DSA3   A0A195FDZ1   A0A131XJY4   A0A067RRN8   A0A0J7KQ30   A0A1Y1N2F7   A0A2A3EHV8   E2C3Y6   A0A088AFT4   A0A1V9XQ00  

PDB

4U3F     E-value=2.16704e-08,     Score=133

KEGG

101736448    K00416 ubiquinol-cytochrome c reductase subunit 6 | (RefSeq) cytochrome b-c1 complex subunit 6, mito

PATHWAY

00190    Oxidative phosphorylation - Bombyx mori (domestic silkworm)
01100    Metabolic pathways - Bombyx mori (domestic silkworm)

GO

GO:0006122   GO:0008121   GO:0070469   GO:0005743   GO:0055114   GO:0005739   GO:0009060   GO:0005750   GO:0005515   GO:0006413   GO:0031369   GO:0003723   GO:0006730   GO:0009258   GO:0016155   GO:0003824  

PANTHER

PTHR15336  

Subcellular location

Mitochondrion inner membrane  

Length:

84

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0

Exp number, first 60 AAs:

0

Total prob of N-in:

0.32672

outside

1  -  84

 

 

Pi

272.909987

Theta

199.330225

Tajima's D

1.229698

CLR

0.765779

CSRT

0.71966401679916

Interpretation

Uncertain