Gene

KWMTBOMO09625  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA012983

Annotation

PREDICTED:_LOW_QUALITY_PROTEIN:_ATP-dependent_RNA_helicase_Ddx1-like_[Bombyx_mori]

Location

Bomo_Chr16(-):5710384-5727453      View in EpiBrowser

Full name

ATP-dependent RNA helicase Ddx1      

Location in the cell

Cytoplasmic   Reliability : 3.104

CDS

ATGACTGCTTTCGAAGAATTTGGTGTGCTGCCTGAAATAGGCAAAGCTATTGAAGAAATGGATTGGACTCTACCGACTGATGTCCAAGCCGAAGCTATTCCCCTAATCTTAGGCGGTGGAGATGTACTTATGGCAGCCGAAACTGGCAGTGGAAAGACAGGAGCATTCTGTTTACCTATATTGCAGATTGTCTGGGAAACCTTGAAAGATATGCAGGAAGGAAAAACCGGTAAAGTAATAACACAAACGTCTTCTGAGTGTACTATGTCATTTTTCGATCGCACTGACGCACTGGCTGTTACTCCTGACGGGTTACGGTGTCAATCCAGAAATCAAAAAGACTGGCACGGGTGTAGGGCAACCAAAGGTGTTCATACGAAAGGTGCATATTACTTTGAAGCCACTGTCACTGATGAGGGCTTATGCCGTGTCGGCTGGTCTACACAAGCGGCAAAGCTGGATCTTGGAACTGACAGGCTAGGCTATGGATTTGGTGGTACAGGCAAGAAATCAAATTGTAAGCAATTTGATGATTATGGCGAGGCTTATGGGATGAATGATGTCATTGGCTGTTTCCTGAATTTAAATAATGGTGAAATTCGATACTCTAAAAACGGAGAAGACTTGGGTGTGGCTTTCAGTCTTGATTCATCTAGAAAGTCAGACTGTTACTTCCCTGCAGTTGTCTTGAAAAATGCTGAGATGAGTTTTAACTTTGGTGCCACACCATTTAAGTACCCACCACCAAACGGATACATAGCAATCAGTCAAGCACCCAAAGAAAACGTCAAGCAGAATGTTATAGCCGCTGTAGCTTCAACAGATATTAAACCAGTGAATAATGCACCGCAGGCTATTATTATTGAGCCGTCCAGAGAATTAGCGGAGCAGACCTGTACACAATTTACGAAATTCAAGAAGTATTTAGAAAATCCCAAAATTCGGGAGCTGCTGGTTGTTGGAGGTATAAATGTTAAAGATCAAATTAACCAGTTGAACTGTGGGGTGGATGTCGTCGTTGGGACGCCGGGACGCTTGGAAGACCTTATCCAAGGAGGATACTTATCACTGACGCATTGCCGTTTCTTCGTCTTGGACGAGGCTGATGGTCTCTTGAAAGCGGGTTACGGAGAACTGATTGAACGCCTCCATCGTCAGATCCCGAAGATAACATCCGATGGACGGAGACTGCAGATGGTTGTGTGTTCGGCAACCCTGCACGCATTCGAAGTCAAGAAAATGGCTGAAAAATTAATGCACTTTCCGACTTGGGTCGATTTGAAAGGGGAAGACGCAGTTCCTGAGACCGTACACCATGTTGTTGTGAACGTAGACCCGCAAAAGGACAGCTCTTGGCAAACACTGCGCAAGCACGTGCAGACCGACGGTGTGCACGCTAAGGACAACATTCGAAGCGGCAACACTACGCCTGAAACGTTGTCTGAAGCTGTTAAGATACTGAAAGGAGAATACTGTGTGCGCGCCATCAGGGAACACAAAATGGACCGGGCCATAATATTCTGCCGCACTAAATTGGATTGCGACAACCTCGAGCGGTACTTCAAAACGTTCGGCAATGAGCTGTCCTGTGTGTGCCTGCACGGCGACCGAAAACCAAAGGAGCGCAAAGACAATTTGGAGATATTCAAGAACAGCCAAGTGAAGTTTTTGATTTGCACCGACGTCGCTGCTCGCGGCATCGACATCTCGGGCCTGCCGTTCATGATCAACATAACGCTTCCCGACGAAAAGTCCAACTACGTACATCGCATCGGGCGCGTCGGTCGCGCGGAACGCATGGGCCTGGCCATCAGTCTCGTCTCCACCGTACCCGAAAAGGTATGGTATCATGGCGAGTGGTGTTCATCTCGCGGACGGAACTGCTGGAACACTAATCTGATTGACGACAAACCTAAGGGATGCTGCATGTGGTACAATGAACCTCAGTACCTGGCGGATATTGAAGATCACCTAAATATCACGATACAGCAGGTCGAGACGGATATGAAAGTCCCATCCAATGAGTTTGACGGTAAAGTAGTTTACGGTGAAAAAAGAAAACAAGCTGGTTCCGGATACCAAGACCATGTCAGTCAAATGGCGCCTGTTGTGAAATCTCTGCAAGAGCTAGAGTCGCAAGCACAACTCTACTATCTTAAAATGCATCATAATGTCTCCATTTCTTGA

Protein

MTAFEEFGVLPEIGKAIEEMDWTLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPILQIVWETLKDMQEGKTGKVITQTSSECTMSFFDRTDALAVTPDGLRCQSRNQKDWHGCRATKGVHTKGAYYFEATVTDEGLCRVGWSTQAAKLDLGTDRLGYGFGGTGKKSNCKQFDDYGEAYGMNDVIGCFLNLNNGEIRYSKNGEDLGVAFSLDSSRKSDCYFPAVVLKNAEMSFNFGATPFKYPPPNGYIAISQAPKENVKQNVIAAVASTDIKPVNNAPQAIIIEPSRELAEQTCTQFTKFKKYLENPKIRELLVVGGINVKDQINQLNCGVDVVVGTPGRLEDLIQGGYLSLTHCRFFVLDEADGLLKAGYGELIERLHRQIPKITSDGRRLQMVVCSATLHAFEVKKMAEKLMHFPTWVDLKGEDAVPETVHHVVVNVDPQKDSSWQTLRKHVQTDGVHAKDNIRSGNTTPETLSEAVKILKGEYCVRAIREHKMDRAIIFCRTKLDCDNLERYFKTFGNELSCVCLHGDRKPKERKDNLEIFKNSQVKFLICTDVAARGIDISGLPFMINITLPDEKSNYVHRIGRVGRAERMGLAISLVSTVPEKVWYHGEWCSSRGRNCWNTNLIDDKPKGCCMWYNEPQYLADIEDHLNITIQQVETDMKVPSNEFDGKVVYGEKRKQAGSGYQDHVSQMAPVVKSLQELESQAQLYYLKMHHNVSIS

Description

Acts as an ATP-dependent RNA helicase, able to unwind both RNA-RNA and RNA-DNA duplexes. Possesses 5' single-stranded RNA overhang nuclease activity (By similarity).

Catalytic Activity

ATP + H2O = ADP + H(+) + phosphate

Similarity

Belongs to the DEAD box helicase family. DDX1 subfamily.

Keywords

ATP-binding   Complete proteome   Exonuclease   Helicase   Hydrolase   Nuclease   Nucleotide-binding   Reference proteome   RNA-binding  

Feature

chain  ATP-dependent RNA helicase Ddx1

Uniprot

A0A0N1IKA5   A0A437BIM4   A0A2A4K0C1   A0A2H1W1Y1   A0A212FML7   A0A2J7PVU4   + More
A0A067RH28   A0A087ZYP9   A0A026W4Y4   A0A2A3EEI5   A0A2Z5U645   A0A2J7PVU0   A0A158NYE9   E2BW30   F4WT60   K7J0U0   A0A195F6A1   A0A232EWQ9   A0A195AYX2   A0A151J561   A0A1B6IKZ6   E2ARV8   A0A0C9R6F3   A0A0T6B0Q4   A0A195D0L0   A0A0N1ITN7   A0A0J7KSE3   A0A182R027   D6WQ19   A0A182G367   A0A0L7RE09   E0W1E6   A0A182K800   A0A182HXI7   A0A182X1S6   A0A182LI74   Q7PMT7   A0A1B0GKA8   E9JD76   A0A182RXG1   A0A182UUN4   A0A1Q3FBR9   Q17I24   W8AWI1   A0A1S4F242   A0A182TVK1   A0A1Y1L3E8   A0A310SMN5   A0A1A9WH97   A0A1J1HPU2   S4PXG6   A0A182NNC6   A0A182M988   A0A1W4XKF0   A0A1A9UP81   A0A1B0FBQ6   A0A1A9XK42   A0A1B0ANP0   A0A1A9ZBX0   A0A336MTA5   A0A1I8M934   A0A034VY24   A0A182IR87   A0A1W4XA81   A0A0K8WAU6   A0A182WCL7   N6UFM6   A0A2M4AMX9   W5JRR2   A0A084VZR8   A0A1I8PRU1   A0A1Z5KW41   A0A182FLR0   A0A2R5LJG8   A0A182SHG1   A0A2P8XK11   A0A1W4UZ38   A0A182YI26   B4LE09   B4IXM8   B4PI64   B4IAZ3   A0A0L0CMG3   Q9VNV3   A0A1D2MD94   A0A0J9S022   T1J2C5   B3MAL1   B4KVA3   B4MN98   A0A023GNS0   A0A131YXC4   B3NJ32   A0A224YI64   A0A2P2HX25   B4H8N8   A0A0R3P8Y6   Q29DM1   A0A226DHY8   A0A3B0JSR4  

EC Number

3.6.4.13

Pubmed

26354079    22118469    24845553    24508170    26760975    21347285    + More
20798317    21719571    20075255    28648823    18362917    19820115    26483478    20566863    20966253    12364791    14747013    17210077    21282665    17510324    24495485    28004739    23622113    25315136    25348373    23537049    20920257    23761445    24438588    28528879    29403074    25244985    17994087    17550304    26108605    8666277    10731132    12537572    12537569    27289101    22936249    26830274    28797301    15632085   

EMBL

LADI01006439    KPJ20646.1    RSAL01000051    RVE50292.1    NWSH01000320    PCG77499.1    + More
ODYU01005809    SOQ47068.1    AGBW02007651    OWR54973.1    NEVH01020942    PNF20456.1    KK852686    KDR18468.1    KK107419    EZA51117.1    KZ288269    PBC29884.1    FX985851    BBA93738.1    PNF20457.1    ADTU01003779    GL451091    EFN80062.1    GL888331    EGI62673.1    KQ981768    KYN35998.1    NNAY01001834    OXU22765.1    KQ976701    KYM77235.1    KQ980055    KYN17991.1    GECU01020109    GECU01006522    JAS87597.1    JAT01185.1    GL442175    EFN63841.1    GBYB01008382    JAG78149.1    LJIG01016386    KRT80756.1    KQ977004    KYN06453.1    KQ435765    KOX75351.1    LBMM01003779    KMQ93149.1    AXCN02001905    KQ971354    EFA06143.1    JXUM01141022    JXUM01141023    KQ569173    KXJ68738.1    KQ414613    KOC69059.1    DS235870    EEB19452.1    APCN01005308    AAAB01008968    EAA13221.5    AJWK01028622    GL771866    EFZ09293.1    GFDL01010021    JAV25024.1    CH477243    EAT46335.1    GAMC01017427    JAB89128.1    GEZM01067947    JAV67311.1    KQ759870    OAD62402.1    CVRI01000006    CRK88233.1    GAIX01005073    JAA87487.1    AXCM01002532    CCAG010004106    JXJN01000907    UFQS01002152    UFQT01002152    SSX13347.1    SSX32781.1    GAKP01012197    JAC46755.1    GDHF01004021    JAI48293.1    APGK01028591    APGK01028592    APGK01028593    APGK01028594    KB740694    ENN79436.1    GGFK01008822    MBW42143.1    ADMH02000548    ETN65973.1    ATLV01018954    KE525256    KFB43462.1    GFJQ02007725    JAV99244.1    GGLE01005518    MBY09644.1    PYGN01001881    PSN32349.1    CH940647    EDW70052.2    CH916366    EDV97490.1    CM000159    EDW95512.1    CH480826    EDW44456.1    JRES01000296    KNC32659.1    U34773    AE014296    AY119661    AF057167    AAM50315.1    LJIJ01001765    ODM90861.1    CM002912    KMZ01153.1    JH431796    CH902618    EDV41298.1    CH933809    EDW19443.1    CH963847    EDW72607.1    GBBM01000545    JAC34873.1    GEDV01005721    JAP82836.1    CH954178    EDV52749.1    GFPF01006211    MAA17357.1    IACF01000558    LAB66324.1    CH479224    EDW35081.1    CH379070    KRT08893.1    EAL30393.2    LNIX01000021    OXA43806.1    OUUW01000002    SPP76386.1   

Proteomes

UP000053268    UP000283053    UP000218220    UP000007151    UP000235965    UP000027135    + More
UP000005203    UP000053097    UP000242457    UP000005205    UP000008237    UP000007755    UP000002358    UP000078541    UP000215335    UP000078540    UP000078492    UP000000311    UP000078542    UP000053105    UP000036403    UP000075886    UP000007266    UP000069940    UP000249989    UP000053825    UP000009046    UP000075881    UP000075840    UP000076407    UP000075882    UP000007062    UP000092461    UP000075900    UP000075903    UP000008820    UP000075902    UP000091820    UP000183832    UP000075884    UP000075883    UP000192223    UP000078200    UP000092444    UP000092443    UP000092460    UP000092445    UP000095301    UP000075880    UP000075920    UP000019118    UP000000673    UP000030765    UP000095300    UP000069272    UP000075901    UP000245037    UP000192221    UP000076408    UP000008792    UP000001070    UP000002282    UP000001292    UP000037069    UP000000803    UP000094527    UP000007801    UP000009192    UP000007798    UP000008711    UP000008744    UP000001819    UP000198287    UP000268350   

PRIDE

Q9VNV3   

Pfam

PF00622   SPRY        + More
PF00271   Helicase_C
PF00270   DEAD

Interpro

IPR013320   ConA-like_dom_sf        + More
IPR027417   P-loop_NTPase       
IPR001870   B30.2/SPRY       
IPR011545   DEAD/DEAH_box_helicase_dom       
IPR014014   RNA_helicase_DEAD_Q_motif       
IPR014001   Helicase_ATP-bd       
IPR003877   SPRY_dom       
IPR001650   Helicase_C       

SUPFAM

SSF49899   SSF49899        + More
SSF52540   SSF52540       

CDD

cd00079  HELICc

ProteinModelPortal

A0A0N1IKA5   A0A437BIM4   A0A2A4K0C1   A0A2H1W1Y1   A0A212FML7   A0A2J7PVU4   + More
A0A067RH28   A0A087ZYP9   A0A026W4Y4   A0A2A3EEI5   A0A2Z5U645   A0A2J7PVU0   A0A158NYE9   E2BW30   F4WT60   K7J0U0   A0A195F6A1   A0A232EWQ9   A0A195AYX2   A0A151J561   A0A1B6IKZ6   E2ARV8   A0A0C9R6F3   A0A0T6B0Q4   A0A195D0L0   A0A0N1ITN7   A0A0J7KSE3   A0A182R027   D6WQ19   A0A182G367   A0A0L7RE09   E0W1E6   A0A182K800   A0A182HXI7   A0A182X1S6   A0A182LI74   Q7PMT7   A0A1B0GKA8   E9JD76   A0A182RXG1   A0A182UUN4   A0A1Q3FBR9   Q17I24   W8AWI1   A0A1S4F242   A0A182TVK1   A0A1Y1L3E8   A0A310SMN5   A0A1A9WH97   A0A1J1HPU2   S4PXG6   A0A182NNC6   A0A182M988   A0A1W4XKF0   A0A1A9UP81   A0A1B0FBQ6   A0A1A9XK42   A0A1B0ANP0   A0A1A9ZBX0   A0A336MTA5   A0A1I8M934   A0A034VY24   A0A182IR87   A0A1W4XA81   A0A0K8WAU6   A0A182WCL7   N6UFM6   A0A2M4AMX9   W5JRR2   A0A084VZR8   A0A1I8PRU1   A0A1Z5KW41   A0A182FLR0   A0A2R5LJG8   A0A182SHG1   A0A2P8XK11   A0A1W4UZ38   A0A182YI26   B4LE09   B4IXM8   B4PI64   B4IAZ3   A0A0L0CMG3   Q9VNV3   A0A1D2MD94   A0A0J9S022   T1J2C5   B3MAL1   B4KVA3   B4MN98   A0A023GNS0   A0A131YXC4   B3NJ32   A0A224YI64   A0A2P2HX25   B4H8N8   A0A0R3P8Y6   Q29DM1   A0A226DHY8   A0A3B0JSR4  

PDB

4XW3     E-value=9.74198e-51,     Score=508

KEGG

101740644    K13177 ATP-dependent RNA helicase DDX1 [EC:3.6.4.13] | (RefSeq) ATP-dependent RNA helicase Ddx1-like

GO

GO:0003676   GO:0004386   GO:0005524   GO:0016887   GO:0001700   GO:0007283   GO:0048477   GO:0004518   GO:0032508   GO:0008143   GO:0003682   GO:0042254   GO:0033677   GO:0005634   GO:0004527   GO:0006302   GO:0003712   GO:0008026   GO:0005515   GO:0006413   GO:0031369   GO:0003723   GO:0006730   GO:0009258   GO:0016155   GO:0003824  

Length:

728

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00241

Exp number, first 60 AAs:

0.00052

Total prob of N-in:

0.00005

outside

1  -  728

 

 

Pi

23.830325

Theta

152.219569

Tajima's D

1.405342

CLR

0.642963

CSRT

0.763161841907905

Interpretation

Uncertain