SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO09623
Pre Gene Modal
BGIBMGA012984
Annotation
PREDICTED:_histone_deacetylase_8-like_[Bombyx_mori]
Full name
Histone deacetylase       + More
Histone deacetylase 8      
Location in the cell
Cytoplasmic   Reliability : 1.649
 

Sequence

CDS
ATGAACAATGCTCGTGTTGCTTATCTTTGGGATGAGAAATTAGTGAAGGAATGTATTAGGCTACCAGCAGTATTCGGCAGGGCTCGACTCGTGCACAATTTAATCGAAGCATATGGTCTGATTAGTAAATTGAAAGTAATCCGTTCATCTCCAGCAAGTTATGAAGATTTAAACGTTTTTCATTCAGACTTATATTTAGAACATTTAAAACAAATAACAGACATTGATGATGATTACATTTCTAATGCTCAAGATGAAAATTTTGGGATAGGATATGATTGTCCCCCTGTCCCTAATATGTTCGAGCTGGTGTCAACCATTGCTGGAGGTTCAGTGACGGCTGCTAAGTGTTTGACGATGGGTATTGCTGATATAGCCATTAATTGGTGTGGGGGCTGGCATCATGCACATAATAATCGTGCAGAGGGTTTCTGTTACGTAAACGACATTGTAATAGCAATAGAAAAATTGAAAGGAAAATTCAAAAATATTTTATACGTTGATTTAGATGTGCATCATGGCAATGGTGTTCAAGATGCTTATTGGACGACTCGGTCAGTATACACATTGTCTTTTCACAAGTTCGAACCAGGTTTCTATCCAGGTACAGGGAGTATAGAAGACATTGGTTGCGGTGACGGTGAAGGATATTCATGTAACTTCCCACTTAATGAAGCTTATTCCGATAATACAATTCAATTTGTTTTTGAAAAGGTATTCAATTCTGTTTATTCGAATTTTGCTCCTGACGCAATCGTAGTACAATGCGGGGCTGACGCATTGTCTCATGATCCGCACGGCGGTGCTTGTTTGACTAGTCGCGGTTATTGCGCCTGCATAAGCACTGTTCTCGATAAACAAAAACCTACAATGCTACTCGGAGGGGGAGGATACAACCACTCAAATACTGCTCGTCTGTGGACAACCTTGACAGCTTTCGTTACTGGTGTAGAATTAGATGAGATAATTCCTGAACACAATGAGTGGCCTGAGTATGGACCAGATTACATGCTTCCTGTTCAAGGCACCCTTATTAAGGATACAAACAAGAAATCTTATCTTGAAGACTGTATAAATAAAATAAATGAAAACTTGAAAAAACACTTAGCCAAAACGGAAAAACTTGAACCTGAATCAAAAATATATAAAACAGGTGGAGAATTGGTAAAAAGTGATTATAAAATAAACAAGAGCTATATTCCTAAATATAGTTATGTGCAGAAGACTGAAAGTACCTGTGATACAATGCAGCCTGTTGATGTATACGACTTTGTAGAATAA
Protein
MNNARVAYLWDEKLVKECIRLPAVFGRARLVHNLIEAYGLISKLKVIRSSPASYEDLNVFHSDLYLEHLKQITDIDDDYISNAQDENFGIGYDCPPVPNMFELVSTIAGGSVTAAKCLTMGIADIAINWCGGWHHAHNNRAEGFCYVNDIVIAIEKLKGKFKNILYVDLDVHHGNGVQDAYWTTRSVYTLSFHKFEPGFYPGTGSIEDIGCGDGEGYSCNFPLNEAYSDNTIQFVFEKVFNSVYSNFAPDAIVVQCGADALSHDPHGGACLTSRGYCACISTVLDKQKPTMLLGGGGYNHSNTARLWTTLTAFVTGVELDEIIPEHNEWPEYGPDYMLPVQGTLIKDTNKKSYLEDCINKINENLKKHLAKTEKLEPESKIYKTGGELVKSDYKINKSYIPKYSYVQKTESTCDTMQPVDVYDFVE

Summary

Description
Responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. Histone deacetylases act via the formation of large multiprotein complexes. Also involved in the deacetylation of cohesin complex protein SMC3 regulating release of cohesin complexes from chromatin. May play a role in smooth muscle cell contractility.
Responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. Histone deacetylases act via the formation of large multiprotein complexes. Also involved in the deacetylation of cohesin complex protein SMC3 regulating release of cohesin complexes from chromatin. May play a role in smooth muscle cell contractility (By similarity).
Catalytic Activity
Hydrolysis of an N(6)-acetyl-lysine residue of a histone to yield a deacetylated histone.
Cofactor
a divalent metal cation
Subunit
Interacts with PEPB2-MYH11, a fusion protein consisting of the 165 N-terminal residues of CBF-beta (PEPB2) with the tail region of MYH11 produced by the inversion Inv(16)(p13q22), a translocation associated with acute myeloid leukemia of M4EO subtype. The PEPB2-MYH1 fusion protein also interacts with RUNX1, a well known transcriptional regulator, suggesting that the interaction with HDAC8 may participate in the conversion of RUNX1 into a constitutive transcriptional repressor. Interacts with CBFA2T3. Interacts with phosphorylated SMG5/EST1B; this interaction protects SMG5 from ubiquitin-mediated degradation. Associates with alpha-SMA (smooth muscle alpha-actin).
Interacts with CBFA2T3. Interacts with phosphorylated SMG5/EST1B; this interaction protects SMG5 from ubiquitin-mediated degradation. Associates with alpha-SMA (smooth muscle alpha-actin) (By similarity).
Similarity
Belongs to the histone deacetylase family. HD Type 1 subfamily.
Belongs to the histone deacetylase family. HD type 1 subfamily.
Keywords
3D-structure   Alternative splicing   Chromatin regulator   Complete proteome   Cytoplasm   Disease mutation   Hydrolase   Mental retardation   Metal-binding   Nucleus   Obesity   Phosphoprotein   Reference proteome   Repressor   Transcription   Transcription regulation  
Feature
chain  Histone deacetylase 8
splice variant  In isoform 4 and isoform 6.
sequence variant  In CDLS5; dbSNP:rs397515416.
EC Number
3.5.1.98
EMBL
NWSH01000320    PCG77507.1    ODYU01000646    SOQ35770.1    RSAL01000051    RVE50290.1    + More
AGBW02007651    OWR54975.1    LADI01006439    KPJ20644.1    PYGN01000374    PSN47474.1    GDRN01072091    JAI63597.1    GGMR01014418    MBY27037.1    GBHO01018780    GBRD01009922    GDHC01020413    JAG24824.1    JAG55902.1    JAP98215.1    BFAA01004108    GCB64500.1    ABLF02031468    ABLF02031473    GDIP01241527    LRGB01000944    JAI81874.1    KZS14791.1    GDIQ01057221    GDIQ01033362    JAN37516.1    KK852673    KDR18741.1    GDIP01124908    JAL78806.1    GDIP01093509    JAM10206.1    GDIQ01165587    JAK86138.1    GDIQ01010716    JAN84021.1    GFXV01006015    MBW17820.1    ABLF02034889    SAUD01018877    RXG58395.1    GDIQ01035880    JAN58857.1    BEZZ01000055    GCC24345.1    GDIP01166945    JAJ56457.1    GDIP01064267    JAM39448.1    GDIP01221139    JAJ02263.1    NOWV01000057    RDD42307.1    GDIP01028696    JAM75019.1    GBBI01003362    JAC15350.1    GDIP01222336    JAJ01066.1    LMAW01002620    KQK78994.1    JW870226    AFP02744.1    DS985245    EDV25056.1    MUZQ01000056    OWK60621.1    UFQS01000750    UFQT01000750    SSX06612.1    SSX26959.1    GEZM01043555    JAV79030.1    ABQF01018743    JU321537    JU476398    JV047641    AFE65293.1    AFH33202.1    AFI37712.1    GDIQ01202514    JAK49211.1    UFQT01001504    SSX30855.1    GBGD01002043    JAC86846.1    AQIA01085334    AQIA01085335    AQIA01085336    AQIA01085337    AQIA01085338    AQIA01085339    AQIA01085340    AQIA01085341    CM001296    EHH60991.1    JSUE03045885    JSUE03045886    JSUE03045887    CM001273    EHH30843.1    AADN05000020    KZ508327    PKU35340.1    AKHW03000635    KYO45119.1    BT075917    ACO10341.1    GECU01026431    JAS81275.1    NEVH01020850    PNF21315.1    AHAT01015581    AHAT01015582    AHAT01015583    AHAT01015584    AFYH01043253    AFYH01043254    AFYH01043255    AFYH01043256    GAMT01008549    GAMS01009942    GAMR01005256    GAMQ01006531    GAMP01008046    GAMP01008045    GAMP01008044    JAB03312.1    JAB13194.1    JAB28676.1    JAB35320.1    JAB44711.1    AAWZ02031887    HAEI01001388    HAEH01010318    SBR75961.1    GDIP01098602    JAM05113.1    HAEB01008146    HAEC01013236    SBQ81453.1    HAED01011632    HAEE01002128    SBR22148.1    HADY01002754    HAEJ01017910    SBS58367.1    AJFE02013641    AJFE02013642    AJFE02013643    AJFE02013644    AJFE02013645    AJFE02013646    AJFE02013647    AACZ04026470    AACZ04026471    AACZ04026472    AACZ04026473    AACZ04026474    NBAG03000573    PNI14692.1    AF230097    AF245664    AJ277724    BQ189619    AK296641    AK300895    AA376331    AI159768    T99283    AF212246    AL133500    BX295542    BC050433    PZQS01000006    PVD27935.1    AGTO01001454    CABD030125736    CABD030125737    CABD030125738    CABD030125739    CABD030125740    CABD030125741    CABD030125742    CABD030125743    CABD030125744    CABD030125745    NDHI03003732    PNJ04702.1    GABZ01001828    JAA51697.1    AKCR02000199    PKK18529.1    ACTA01034718    ACTA01042717    ACTA01050717    ACTA01058717    ACTA01066717    ACTA01074717    ACTA01082717    ACTA01090717    GBEX01001531    JAI13029.1    GAAZ01001085    GBKC01001614    JAA96858.1    JAG44456.1    KY273094    APW77295.1    HADZ01004513    SBP68454.1    AMQN01001497    KB303020    ELU03635.1    AEFK01131716    GABC01006898    GABF01006427    GABD01007946    GABE01010319    JAA04440.1    JAA15718.1    JAA25154.1    JAA34420.1    GCES01153599    JAQ32723.1    HAEF01007189    HAEG01007292    SBR44571.1    HAAF01000265    CCP72091.1    AAGW02057537    AAGW02057538    AAGW02057539    AAGW02057540    AAGW02057541    AAGW02057542    AAGW02057543    AAGW02057544    AAGW02057545    AAGW02057546    GEBF01003730    JAN99902.1    GG666644    EEN46288.1    AGTP01104297    AGTP01104298    AGTP01104299    AGTP01104300    AGTP01104301    AGTP01104302    AGTP01104303    AGTP01104304    KE163658    EPQ13013.1    BC162023   
Pfam
PF00850   Hist_deacetyl
Interpro
IPR023801   His_deacetylse_dom        + More
IPR023696   Ureohydrolase_dom_sf       
IPR000286   His_deacetylse       
IPR037138   His_deacetylse_dom_sf       
IPR003084   His_deacetylse_1       
SUPFAM
SSF52768   SSF52768       
Gene 3D
PDB
5D1D     E-value=2.05336e-90,     Score=848

Ontologies

Topology

Subcellular location
Nucleus  
Cytoplasm  
Length:
426
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.0456600000000001
Exp number, first 60 AAs:
0.00647
Total prob of N-in:
0.01550
outside
1  -  426
 
 

Population Genetic Test Statistics

Pi
145.821776
Theta
40.368953
Tajima's D
-2.313878
CLR
1592.771279
CSRT
0.00269986500674966
Interpretation
Possibly Positive selection
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