SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO09620  Validated by peptides from experiments
Pre Gene Modal
BGIBMGA012985
Annotation
PREDICTED:_synaptosomal-associated_protein_29_[Papilio_polytes]
Full name
Metalloendopeptidase      
Location in the cell
Nuclear   Reliability : 3.989
 

Sequence

CDS
ATGTCTGGGCATAAATATTTCACAAATCCGAACAACCTATTCGAAAATGACGACGTCGATGATAACGAATTTGTAGATCGCTTCCGGTCAAGAATACCTCAAACACAGCAAGCAAATAAGCCTTATGGAGGTCATATTGCAGAACTGGAACGTCAACGCCAAGCTATGATCCAAACACAAAGAGAAATCGAACAACGGACAATAGATTCATCAACGAGAAGTATCGGATTGCTTCGTGATTCTGAACAAATTGGTATTGCAACGGCCGAAGAGCTTTCCCGACAACGTGAACAGCTACAGAACACAGACAGGCGACTTGATGAGATTAACACCAATTTAAACTATAGTCAAAAACATTTAAATGGTATAAAGTCTGTATTTTATGGTCTGAAGAATTATATTTCCGGAAAAAGTGATCAAACACCATCTAAAAGTCCAGCGACCTCGAATGTACGTAATGCTGGTACAAGTAGTAGCAGGCTTGATGAAACCCTAGATAATATGTCTAGGAACGTTGAAGATCGCTTTGAGAGTCATCCCTCAGCACGCCTACATGGTTTGTCTCAAGAAAGCGCTAAGAGTCCTGAAACAGAAAACGAGAGAGTAAATAATATACTTGATTCGAACTTGGATGAAATGGTGCATGCTATATCCCGGCTCAAACATCTAGGAGTTGCACTTGGTGAAGAGATAGAACAGCAAAACAACCTCGTGGATACTATTCAAGACAAAGTTGAGATTGCAGATATCAAGATTGGTAAACAAAATAAACAAATGAATAAACTACTTGGGAAATAG
Protein
MSGHKYFTNPNNLFENDDVDDNEFVDRFRSRIPQTQQANKPYGGHIAELERQRQAMIQTQREIEQRTIDSSTRSIGLLRDSEQIGIATAEELSRQREQLQNTDRRLDEINTNLNYSQKHLNGIKSVFYGLKNYISGKSDQTPSKSPATSNVRNAGTSSSRLDETLDNMSRNVEDRFESHPSARLHGLSQESAKSPETENERVNNILDSNLDEMVHAISRLKHLGVALGEEIEQQNNLVDTIQDKVEIADIKIGKQNKQMNKLLGK

Summary

Cofactor
Zn(2+)
EC Number
3.4.24.-
EMBL
BABH01003717    LADI01006439    KPJ20640.1    KQ460208    KPJ16607.1    JTDY01000205    + More
KOB78302.1    RSAL01000051    RVE50286.1    NWSH01000320    PCG77503.1    ODYU01000646    SOQ35774.1    GAIX01012281    JAA80279.1    AGBW02007651    OWR54979.1    GFDF01003667    JAV10417.1    GGMS01002989    MBY72192.1    KK853054    KDR12010.1    GBYB01006631    JAG76398.1    KQ971344    KYB27129.1    AJVK01058488    KQ414731    KOC62365.1    LJIG01022884    KRT78231.1    ADTU01016497    KQ434791    KZC05372.1    LBMM01005052    KMQ91857.1    GL887575    EGI70757.1    KQ981875    KYN33999.1    KK107536    QOIP01000008    EZA49207.1    RLU19393.1    GEZM01072729    JAV65426.1    GANO01001413    JAB58458.1    KQ979074    KYN23068.1    GBXI01007252    JAD07040.1    KZ288227    PBC31780.1    GBYB01011010    JAG80777.1    GAMC01014742    GAMC01014741    GAMC01014740    JAB91815.1    UFQS01000150    UFQT01000150    SSX00543.1    SSX20923.1    GAKP01002341    JAC56611.1    GDHF01027937    GDHF01010255    JAI24377.1    JAI42059.1    KQ769958    OAD52712.1    GL438737    EFN68575.1    GECZ01021499    JAS48270.1    GL437663    EFN70136.1    GECU01016401    JAS91305.1    AAAB01008816    EAL41600.3    CH916375    EDV98072.1    GFXV01004826    MBW16631.1    CM000071    EAL24650.1    GEDC01013218    JAS24080.1    CH479181    EDW31298.1    GEDC01031180    JAS06118.1    CP012524    ALC40885.1    KB632003    ERL87864.1    APGK01044225    KB741021    ENN75087.1    QCYY01003162    ROT64960.1    OUUW01000001    SPP75951.1    CH902619    EDV35482.1    KK854112    PTY11488.1    GALX01001473    JAB66993.1    CH933808    EDW10721.1    GEBQ01013240    JAT26737.1    ABLF02021375    AK341647    BAH71993.1    KQ977939    KYM98536.1    BT127531    AEE62493.1    JRES01000049    KNC34564.1    CH963850    EDW74663.1    CVRI01000047    CRK97205.1    JXJN01017416    KQ982934    KYQ49135.1    CH940648    EDW60437.1    LNIX01000006    OXA52979.1    AE013599    AY061069    AAF47071.1    AAL28617.1    CH480824    EDW57016.1    CM000362    CM002911    EDX08440.1    KMY96127.1    CM000158    EDW92402.1    CH477571    EAT38868.1    NEVH01017447    PNF24437.1    CH954179    EDV56873.1    LJIJ01000374    ODM98202.1    EZ423784    ADD20060.1    GFDL01011936    JAV23109.1    GBHO01034066    JAG09538.1    GDHC01012164    JAQ06465.1    JXUM01083455    KQ563378    KXJ73947.1    GECL01000333    JAP05791.1    GBBI01003666    JAC15046.1    GBHO01034063    JAG09541.1    CCAG010016890    GAPW01002066    JAC11532.1    ACPB03002836    AFFK01018464    KA647861    AFP62490.1    MWRG01018515    PRD23226.1    KK120763    KFM78995.1    KQ435746    KOX76544.1    DS235882    EEB20253.1   
Pfam
PF01400   Astacin        + More
PF07406   NICE-3
PF00106   adh_short
PF02036   SCP2
Interpro
IPR000727   T_SNARE_dom        + More
IPR010876   NICE-3_prd       
IPR001506   Peptidase_M12A       
IPR024079   MetalloPept_cat_dom_sf       
IPR006026   Peptidase_Metallo       
IPR034035   Astacin-like_dom       
IPR036527   SCP2_sterol-bd_dom_sf       
IPR002347   SDR_fam       
IPR036291   NAD(P)-bd_dom_sf       
IPR003033   SCP2_sterol-bd_dom       
SUPFAM
SSF51735   SSF51735        + More
SSF55718   SSF55718       
Gene 3D
PDB
4WY4     E-value=8.07506e-08,     Score=133

Ontologies

Topology

Length:
265
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0
Exp number, first 60 AAs:
0
Total prob of N-in:
0.05048
outside
1  -  265
 
 

Population Genetic Test Statistics

Pi
311.784685
Theta
240.415704
Tajima's D
0.933034
CLR
0.011804
CSRT
0.641317934103295
Interpretation
Possibly Positive selection
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