Gene

KWMTBOMO09611

Pre Gene Modal

BGIBMGA012987

Annotation

PREDICTED:_LIM/homeobox_protein_Lhx5_[Amyelois_transitella]

Location

Bomo_Chr16(-):5386835-5478205      View in EpiBrowser

Transcription factor

Homeobox

Location in the cell

Nuclear   Reliability : 3.238

CDS

ATGGCAGAATATAAAAATAAAGAAAAATACAGTAAGACACTCGCCGTCGTTCGTGGACCTCTCCGTTATCGTCAGTACGCGTTTAGAAGTCGCGCGTTTCGGTGTATTGCCGGTGACGGCGTGCGAAATCGCCGCGCTGTGTCAAGTGAAGTGCCGTGTAGAGGTGCCGAAGTGGCGGGTTTCCTAGCCGCAGGACGGGGGGCCCATGCCCCCTTCCACCAGCACCACATTGGTAAAAGACGAGGTGAGGCAGGCGGCGCGATGGCGTGCGCCGGCTGCGAGAAGCCGATCCTGGACAAATTCCTCCTGCACGTGCTGGAGAGGGCCTGGCACGCCGCTTGCGTCAGATGCGCCGACTGCAGAGCCCCGCTCTCAGATAAATGCTACTCTAGGGACAATAAACTATTCTGCCGGAATGATTTTTTTAGGCGTTACGGAACGAAATGCAGCGGCTGCGGTCACGGGATCTCACCATCGGACCTGGTTAGGAAGGCTCGGGAGAAGGTCTTCCACCTCAACTGCTTCACCTGTCTCGTGTGCAGGAAGCAGCTGTCTACCGGAGAGGAGCTGTACGTTCTCGACGACAACAAGTTTATATGCAAAGAGGATTACCTCGCGGGAAAGGCGCCGACCCAGCACCCGGACTCTTTACTAGGATCGGGTTCTGATGAAGAAGAAGAGGATGAGTCAAGAGCAGCCAATAATTCGAGTAGTCCAGCGCACGCGCCCCACCCGGCTCTCCACTCCGAGCTGTCGCACAACGGAGATACAAAGCCACATGAAGACTCCGAAGACCAGGGCTCCCTGGACGGTGACCCCGAGACTCGAGACTCACAGGCCGAGAACAAGTCGCCGGACGACGGCAACGGAGGCTCGAAGAGAAGGGGTCCCCGGACCACGATCAAGGCGAAACAGCTCGAAATACTGAAGTCGGCTTTCTCACAAACACCGAAGCCCACGCGGCACATACGAGAGCAGCTCGCTAAGGAGACCGGTCTACCGATGCGAGTCATACAGGTTTGGTTCCAAAACAAACGTTCAAAAGAGCGTCGACTAAAGCAACTCACGTCGATGGGCAGGGGACCTTTCTTCGGGTCTTCGCGTAAAATGCGTGGTTTCCCAATGAACTTATCACCGGGGGGCTTGGAGGAAGGTCCGCCGGGGTTTCCGTACTTCGCGACAGCAGATGGCAAGTTCGAGTTTGGCTATGGCCCGCCGTTCCACCATGATGCGCCATTCTTCCATCCGCCGCCGACGATGCCCTTCAATCAGCCAGGTCGTTTCGCAGGGGGCATGGAGGGAGTGCCGGGTGGCGAGTTTCCCGAGCAGTTTCCACCCCCGGACCACCTGGTGCTTCCGCGACCCTCGTCCCCGGAGTTCACCTTCGGAGACGGGCCTCCGCCCCTGCACCCCGAGGGTCTGGTGTGGTAG

Protein

MAEYKNKEKYSKTLAVVRGPLRYRQYAFRSRAFRCIAGDGVRNRRAVSSEVPCRGAEVAGFLAAGRGAHAPFHQHHIGKRRGEAGGAMACAGCEKPILDKFLLHVLERAWHAACVRCADCRAPLSDKCYSRDNKLFCRNDFFRRYGTKCSGCGHGISPSDLVRKAREKVFHLNCFTCLVCRKQLSTGEELYVLDDNKFICKEDYLAGKAPTQHPDSLLGSGSDEEEEDESRAANNSSSPAHAPHPALHSELSHNGDTKPHEDSEDQGSLDGDPETRDSQAENKSPDDGNGGSKRRGPRTTIKAKQLEILKSAFSQTPKPTRHIREQLAKETGLPMRVIQVWFQNKRSKERRLKQLTSMGRGPFFGSSRKMRGFPMNLSPGGLEEGPPGFPYFATADGKFEFGYGPPFHHDAPFFHPPPTMPFNQPGRFAGGMEGVPGGEFPEQFPPPDHLVLPRPSSPEFTFGDGPPPLHPEGLVW

Uniprot

A0A437BIK9   A0A0N1IPW2   A0A1W4X9R1   D2A3V9   A0A0K8TW84   A0A0K8UTF8   + More
A0A084WLZ7   Q7QHD1   B3MZH3   A0A1W4UQM5   B4Q008   B3NUK6   Q9V472   B4MD89   Q29GR9   B4JNT7   B4L3K6   A0A3B0K305   A0A0A1WH29   W8C4V3   A0A034WQ63   B4NPZ4   A0A1J1IE69   K7J840   A0A0L0C2K4   A0A1I8MJU0   A0A1I8PUY9   A0A1I8PV03   A0A154PL63   A0A158P0G4   A0A0L7R276  

Pubmed

26354079    18362917    19820115    24438588    12364791    14747013    + More
17210077    17994087    17550304    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    15632085    25830018    24495485    25348373    20075255    26108605    25315136    21347285   

EMBL

RSAL01000051    RVE50280.1    KQ460208    KPJ16601.1    KQ971348    EFA05667.1    + More
GDHF01033984    JAI18330.1    GDHF01022453    JAI29861.1    ATLV01024328    ATLV01024329    ATLV01024330    ATLV01024331    KE525351    KFB51241.1    AAAB01008816    EAA05265.3    CH902635    EDV33774.1    CM000162    EDX02214.1    CH954180    EDV46329.1    AF181631    AE014298    AB034690    AAD55417.2    AAF46413.2    BAA86224.1    CH940660    EDW58161.1    CH379064    EAL32040.3    CH916371    EDV92380.1    CH933810    EDW07134.1    OUUW01000015    SPP88614.1    GBXI01016579    JAC97712.1    GAMC01005269    JAC01287.1    GAKP01002465    JAC56487.1    CH964291    EDW86219.1    CVRI01000047    CRK98066.1    JRES01000984    KNC26462.1    KQ434954    KZC12592.1    ADTU01004881    ADTU01004882    ADTU01004883    KQ414666    KOC64939.1   

Proteomes

UP000283053    UP000053240    UP000192223    UP000007266    UP000030765    UP000007062    + More
UP000007801    UP000192221    UP000002282    UP000008711    UP000000803    UP000008792    UP000001819    UP000001070    UP000009192    UP000268350    UP000007798    UP000183832    UP000002358    UP000037069    UP000095301    UP000095300    UP000076502    UP000005205    UP000053825   

PRIDE

Q9V472   

Pfam

PF00412   LIM        + More
PF00046   Homeodomain

Interpro

IPR009057   Homeobox-like_sf        + More
IPR001781   Znf_LIM       
IPR001356   Homeobox_dom       
IPR017970   Homeobox_CS       

SUPFAM

SSF46689   SSF46689       

CDD

cd00086  homeodomain

ProteinModelPortal

A0A437BIK9   A0A0N1IPW2   A0A1W4X9R1   D2A3V9   A0A0K8TW84   A0A0K8UTF8   + More
A0A084WLZ7   Q7QHD1   B3MZH3   A0A1W4UQM5   B4Q008   B3NUK6   Q9V472   B4MD89   Q29GR9   B4JNT7   B4L3K6   A0A3B0K305   A0A0A1WH29   W8C4V3   A0A034WQ63   B4NPZ4   A0A1J1IE69   K7J840   A0A0L0C2K4   A0A1I8MJU0   A0A1I8PUY9   A0A1I8PV03   A0A154PL63   A0A158P0G4   A0A0L7R276  

PDB

3MMK     E-value=1.81652e-37,     Score=392

KEGG

101739274    K09372 LIM homeobox protein 1 | (RefSeq) LIM/homeobox protein Lhx1

GO

GO:0046872   GO:0005634   GO:0006355   GO:0043565   GO:0030182   GO:0000981   GO:0000977   GO:0045944   GO:0048749   GO:0045892   GO:0045893   GO:0007479   GO:0007480   GO:0010468   GO:0008270   GO:0003677   GO:0016742   GO:0005737   GO:0006730   GO:0009258   GO:0016155   GO:0003824  

Subcellular location

Nucleus  

Length:

476

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.01151

Exp number, first 60 AAs:

0.0051

Total prob of N-in:

0.02209

outside

1  -  476

 

 

Pi

236.439181

Theta

179.581879

Tajima's D

1.139246

CLR

0.244593

CSRT

0.700564971751412

Interpretation

Uncertain