SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO09605
Pre Gene Modal
BGIBMGA012841
Annotation
PREDICTED:_methyl-CpG-binding_domain_protein_4-like_[Amyelois_transitella]
Location in the cell
Nuclear   Reliability : 2.407
 

Sequence

CDS
ATGGCGGAATACACAAGCAGGTTTTTTAACAAAGAAAGCGATGAAGCCACCGAAAAAAATACAACATTTATTCCTGTTTCTGATGCGCAAAATTTAGATTCCTCACAGGATCTAAGTCAAAGTTCCATTGAAGATGCAGATATGCTTAGTCTATCACAACTGACCATAGAGGAACGAGTGCCATTGAAAATCCAAGCTTTTTATAACATCACACCCAGACTCATGCCTTCGTCTCCTCATTACATCGTAGAAGAAGAATTCTCTGTAAACCCCTGGGCGATGTTAATAGCAACTATATTCTTGAACAAAACATCAGGGAAAACGGCCCGACCTCACATGAGTGTTTTTTTCGATGAATATCCGACACCTTATCACGTTTTGAGCGATAATCCATCGTCAATAGAAAGGTTTTTTGATACTTTGGGATTGAGGAAAAGGGGCCACATGATTTGGAAGCTTAGCTATCAGTTTGTTTCGTCAAAGTGGTGTCGTGCCAGCGATCTATACGGCATCGGGAAATACGGTGAGGATGCCTACAGAATTTTCTGCCTGGGCCACACAGATTTAGACCCTGACGATAGATACTTAAGACTTTATTTGAATTGGTTGAGGGGTCAAACGGAATTTTTGGAGCAAAACGGCGTTGTAGACTGTGAATCTGTTATCGAGGATCCTGTTACGAAATATTATGGTATCACACTGAGAAATTATCGATAA
Protein
MAEYTSRFFNKESDEATEKNTTFIPVSDAQNLDSSQDLSQSSIEDADMLSLSQLTIEERVPLKIQAFYNITPRLMPSSPHYIVEEEFSVNPWAMLIATIFLNKTSGKTARPHMSVFFDEYPTPYHVLSDNPSSIERFFDTLGLRKRGHMIWKLSYQFVSSKWCRASDLYGIGKYGEDAYRIFCLGHTDLDPDDRYLRLYLNWLRGQTEFLEQNGVVDCESVIEDPVTKYYGITLRNYR

Summary

Interpro
IPR011257   DNA_glycosylase       
SUPFAM
SSF48150   SSF48150       
PDB
4OFE     E-value=2.96794e-19,     Score=231

Ontologies

Topology

Length:
238
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.02187
Exp number, first 60 AAs:
0
Total prob of N-in:
0.10054
outside
1  -  238
 
 

Population Genetic Test Statistics

Pi
20.077824
Theta
28.982003
Tajima's D
0.68434
CLR
1.678302
CSRT
0.571871406429678
Interpretation
Uncertain
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