Gene

KWMTBOMO09604

Annotation

PREDICTED:_RNA-directed_DNA_polymerase_from_mobile_element_jockey-like_[Plutella_xylostella]

Location

Bomo_Chr16(+):5172408-5173753      View in EpiBrowser

Location in the cell

Mitochondrial   Reliability : 3.784

CDS

ATGGGCAAGTTGTTCGAGCGGCTGCTGCTGAGAAGGGTGTCGCCGCACATCCTTCTCAGACCCGAGCAATTCGGGTTTCGCAGCGGTCACTCGACAACGCTGCAATTGGTCCGCGTTATGCACCACTTGGCGGATCGGTCCAACGCGCGCCAGTACACGGCCGCAGTCTTTCTCGATATCGAGAAGGCCTTCGACCGTGTCTGGCATGCGGGACTGATCTACAAGCTGTTGCAGAACACGGACCTCCAGCACGCCTATGTGCGACTGCTGGGGTCGTACCTGGAGGGAAGATCCTTCCTTGTCGCGGTCGAGGGCGCAAAGTCGTCGGTGCGCCCAGTCACGGCCGGAGTTCCCCAGGGAAGCGTCCTGGCACCAGTCCTCTACGCTCTCTACACCAACGATATTCCCACGCTTGAGGGCAACCTCCAAGCGTGGGAAGCCGACGTGAAGTTGGCGCTGTTTGCCGACGACAGCGCCTACTTCTCGTCCTCTAATTTCCCCTCTGCGGCCATTTCGAGGATGCAGAGGCTGTTGGACCTACTGCCCCAGTGGCTGGACCGATGGAGGGTCGCGGTCAACGTGGGGAAGACCGCGGCTATCCTCTTCGGTCCGGTCCGCACAAGAGCCGTCCCAGGACAGCTCAGTCTCCGTGGAGTCAATGTCGAGTTTAGGCCCAGTGTCCGATACCTGGGAGTCAATATCGACCGGAGTTTGAGGATGACCGCCCACGCCAAGTCGGCGTTGGCGGCCGCCCGCTATGCGAGGTTTCTCCTCCGGCCGGTGTTGGCCTCCAGGTTGCCGACCAGGACTAGACTCGGCATTTACAAGACGTATGTTCGTTCCCGTATCACGTACGCAGCTGCGGCCTGGTATCACCTCATCCCGCAGATCATGCGGGTGAAGTTACAGGCCCAGCAGAATCTGGCTCTTCGCACGATAGTCGGAGCAGGGCGCTACGTCAGAAATGACGTAATCGCCCGGGATCTAGATGTGGAGTCGCTCGAGGAGTTCATTCGGAGGCTAGCTCGTAATATGTACGAGCGGGCTGACGGTGGACCCCACGAGCATCTCCACAATATAGCTCCCTTGCACGCCAGACCACCTGATGGTCAGGCGCTACCAAGGGAGCTACTGGAACCCCCGGCTATGGTAAGATAG

Protein

MGKLFERLLLRRVSPHILLRPEQFGFRSGHSTTLQLVRVMHHLADRSNARQYTAAVFLDIEKAFDRVWHAGLIYKLLQNTDLQHAYVRLLGSYLEGRSFLVAVEGAKSSVRPVTAGVPQGSVLAPVLYALYTNDIPTLEGNLQAWEADVKLALFADDSAYFSSSNFPSAAISRMQRLLDLLPQWLDRWRVAVNVGKTAAILFGPVRTRAVPGQLSLRGVNVEFRPSVRYLGVNIDRSLRMTAHAKSALAAARYARFLLRPVLASRLPTRTRLGIYKTYVRSRITYAAAAWYHLIPQIMRVKLQAQQNLALRTIVGAGRYVRNDVIARDLDVESLEEFIRRLARNMYERADGGPHEHLHNIAPLHARPPDGQALPRELLEPPAMVR

Uniprot

A0A3S2NJ07   A0A437ATB5   A0A2A4JQF8   J9LF86   J9LFC9   A0A2S2RAN7   + More
X1X928   J9KPF1   X1XGU0   J9L876   X1WN18   J9KCZ4   A0A437AT06   X1WNI2   A0A2S2Q823   A0A087T1W0   A0A1Y1KUU7   J9KVX5   A0A2J7Q5G9   A0A2J7QEZ4   A0A2S2NJB5   A0A087U2S8   X1WZH0   V5GNF3   J9LR29   A0A2J7PMP9   A0A2J7RIW7   A0A2J7PMP6   A0A2J7R4B7   A0A2J7Q4F7   A0A2J7RM10   A0A2J7RS77   A0A2J7RB54   A0A2J7Q059   X1WQR0   X1WLB2   A0A2J7QUJ9   J9LF85   A0A2J7RPU2   J9KLQ2   A0A2J7QFL0   A0A1Y1NA23   A0A2J7Q0Q6   A0A2J7Q6J2   A0A2J7Q1Y9   J9LC21   J9KKL3   A0A2J7RRU8   A0A2J7R2E1   A0A2J7R6U1   A0A2J7PU96   X1XFE3   A0A2J7RKP3   A0A2J7QY69   A0A2J7QR37   A0A2J7PBY3   A0A2J7PDS9   A0A087TV70   X1WWC4   A0A0N0PA09   V5I850   A0A2J7QQP1   X1X5E5   A0A2H8TV33   V5GNJ2   J9JS95   A0A087TRT5   A0A0A9Z4E6   J9KEU4   A0A0N1PFV1   A0A0A9YN51   X1WMU5   A0A2J7QAT1   A0A194Q1H8   A0A2S2PR14   A0A2J7Q2R1   A0A224XF24   A0A2S2PX53   X1WSV5   A0A2A4K8E7   Q9XXW0   X1WXU3   A0A2L2YNL2   A0A2S2QJM7   A0A0A9YJ00   A0A2S2QTZ8   A0A2A4K918   A0A139WA11   A0A1Y1JWM7   A0A087T2T6   A0A1Y1JXT3   A0A0A9YU04   A0A2S2QV09   A0A1Y1LKN6   Q9BPQ0   J9JUG3   A0A087U3E2   A0A2H8U0H5  

Pubmed

28004739    26354079    25401762    10333566    26561354    18362917    + More
19820115   

EMBL

RSAL01000708    RVE41206.1    RSAL01000536    RVE41424.1    NWSH01000895    PCG73652.1    + More
ABLF02017815    ABLF02023911    GGMS01017914    MBY87117.1    ABLF02066620    ABLF02041767    ABLF02055645    ABLF02033522    ABLF02021177    ABLF02027367    ABLF02066338    ABLF02008463    RSAL01000707    RVE41207.1    ABLF02008153    ABLF02008462    ABLF02008464    GGMS01004685    MBY73888.1    KK113014    KFM59099.1    GEZM01074951    JAV64378.1    ABLF02010251    ABLF02035981    NEVH01017559    PNF23833.1    NEVH01015305    NEVH01006671    PNF27154.1    PNF37357.1    GGMR01004661    MBY17280.1    KK117880    KFM71667.1    ABLF02034467    GALX01005359    JAB63107.1    ABLF02025082    ABLF02039175    ABLF02041809    NEVH01023961    PNF17613.1    NEVH01003017    PNF40781.1    NEVH01023962    PNF17612.1    NEVH01007443    PNF35684.1    NEVH01018383    PNF23463.1    NEVH01021586    NEVH01006600    NEVH01002584    PNF19589.1    PNF37419.1    PNF41868.1    NEVH01000280    PNF43672.1    NEVH01005938    PNF38077.1    NEVH01020071    PNF21969.1    ABLF02050434    ABLF02064867    ABLF02042518    ABLF02057746    NEVH01010546    PNF32261.1    ABLF02017813    NEVH01001355    PNF42855.1    ABLF02030319    ABLF02030320    NEVH01014858    PNF27387.1    GEZM01008457    JAV94772.1    NEVH01019964    PNF22161.1    NEVH01017470    PNF24199.1    NEVH01019376    PNF22596.1    ABLF02036316    ABLF02036319    ABLF02048663    ABLF02066977    ABLF02029306    ABLF02029314    ABLF02060138    NEVH01000598    PNF43535.1    NEVH01007838    PNF34986.1    NEVH01006754    PNF36554.1    NEVH01021205    PNF19912.1    ABLF02029291    NEVH01002716    PNF41415.1    NEVH01009134    PNF33528.1    NEVH01011985    PNF31054.1    NEVH01027074    PNF13841.1    NEVH01026154    PNF14491.1    KK116883    KFM69009.1    ABLF02003961    ABLF02059872    KQ459259    KPJ02068.1    GALX01005300    JAB63166.1    NEVH01012084    PNF30905.1    ABLF02037507    ABLF02041173    ABLF02054117    GFXV01005866    MBW17671.1    GALX01005299    JAB63167.1    ABLF02028535    ABLF02028545    KK116445    KFM67824.1    GBHO01041571    GBHO01005400    GBHO01005396    JAG02033.1    JAG38204.1    JAG38208.1    ABLF02040650    ABLF02040651    ABLF02056776    KQ459265    KPJ02064.1    GBHO01041572    GBHO01041570    GBHO01010553    JAG02032.1    JAG02034.1    JAG33051.1    ABLF02014862    ABLF02014866    ABLF02061908    NEVH01016327    PNF25684.1    KQ459580    KPI99178.1    GGMR01019198    MBY31817.1    NEVH01019080    PNF22876.1    GFTR01008038    JAW08388.1    GGMS01000737    MBY69940.1    ABLF02016494    ABLF02066976    NWSH01000032    PCG80497.1    AB018558    BAA76304.1    ABLF02008933    IAAA01035747    LAA09607.1    GGMS01008766    MBY77969.1    GBHO01010547    GBHO01010546    JAG33057.1    JAG33058.1    GGMS01012005    MBY81208.1    PCG80496.1    KQ971729    KYB24751.1    GEZM01101506    JAV52621.1    KK113137    KFM59425.1    GEZM01101509    JAV52620.1    GBHO01021814    GBHO01010549    JAG21790.1    JAG33055.1    GGMS01012393    MBY81596.1    GEZM01053022    JAV74219.1    AB055391    BAB21761.1    ABLF02008677    ABLF02011967    ABLF02052409    ABLF02056408    KK117974    KFM71881.1    GFXV01007093    MBW18898.1   

Proteomes

UP000283053    UP000218220    UP000007819    UP000054359    UP000235965    UP000053268    + More
UP000007266   

PRIDE

Q9XXW0    Q9BPQ0   

Pfam

PF00078   RVT_1        + More
PF14529   Exo_endo_phos_2
PF07530   PRE_C2HC
PF03372   Exo_endo_phos
PF03184   DDE_1
PF10551   MULE

Interpro

IPR000477   RT_dom        + More
IPR036691   Endo/exonu/phosph_ase_sf       
IPR005135   Endo/exonuclease/phosphatase       
IPR006579   Pre_C2HC_dom       
IPR004875   DDE_SF_endonuclease_dom       
IPR036875   Znf_CCHC_sf       
IPR018289   MULE_transposase_dom       

SUPFAM

SSF56219   SSF56219        + More
SSF57756   SSF57756       

Gene 3D

3.60.10.10    

ProteinModelPortal

A0A3S2NJ07   A0A437ATB5   A0A2A4JQF8   J9LF86   J9LFC9   A0A2S2RAN7   + More
X1X928   J9KPF1   X1XGU0   J9L876   X1WN18   J9KCZ4   A0A437AT06   X1WNI2   A0A2S2Q823   A0A087T1W0   A0A1Y1KUU7   J9KVX5   A0A2J7Q5G9   A0A2J7QEZ4   A0A2S2NJB5   A0A087U2S8   X1WZH0   V5GNF3   J9LR29   A0A2J7PMP9   A0A2J7RIW7   A0A2J7PMP6   A0A2J7R4B7   A0A2J7Q4F7   A0A2J7RM10   A0A2J7RS77   A0A2J7RB54   A0A2J7Q059   X1WQR0   X1WLB2   A0A2J7QUJ9   J9LF85   A0A2J7RPU2   J9KLQ2   A0A2J7QFL0   A0A1Y1NA23   A0A2J7Q0Q6   A0A2J7Q6J2   A0A2J7Q1Y9   J9LC21   J9KKL3   A0A2J7RRU8   A0A2J7R2E1   A0A2J7R6U1   A0A2J7PU96   X1XFE3   A0A2J7RKP3   A0A2J7QY69   A0A2J7QR37   A0A2J7PBY3   A0A2J7PDS9   A0A087TV70   X1WWC4   A0A0N0PA09   V5I850   A0A2J7QQP1   X1X5E5   A0A2H8TV33   V5GNJ2   J9JS95   A0A087TRT5   A0A0A9Z4E6   J9KEU4   A0A0N1PFV1   A0A0A9YN51   X1WMU5   A0A2J7QAT1   A0A194Q1H8   A0A2S2PR14   A0A2J7Q2R1   A0A224XF24   A0A2S2PX53   X1WSV5   A0A2A4K8E7   Q9XXW0   X1WXU3   A0A2L2YNL2   A0A2S2QJM7   A0A0A9YJ00   A0A2S2QTZ8   A0A2A4K918   A0A139WA11   A0A1Y1JWM7   A0A087T2T6   A0A1Y1JXT3   A0A0A9YU04   A0A2S2QV09   A0A1Y1LKN6   Q9BPQ0   J9JUG3   A0A087U3E2   A0A2H8U0H5  

PDB

6AR3     E-value=0.00605461,     Score=93

KEGG

105842439    no KO assigned | (RefSeq) uncharacterized LOC105842439

GO

GO:0003964   GO:0003676   GO:0008270   GO:0004519  

Length:

385

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.03627

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00162

outside

1  -  385

 

 

Pi

119.10385

Theta

166.668606

Tajima's D

-0.953593

CLR

31.844647

CSRT

0.141592920353982

Interpretation

Uncertain