SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO09599
Pre Gene Modal
BGIBMGA012992
Annotation
hypothetical_protein_KGM_15598_[Danaus_plexippus]
Location
Bomo_Chr16(-):5064617-5093858      View in EpiBrowser
Location in the cell
Nuclear   Reliability : 4.285
 

Sequence

CDS
ATGGGTCTCGACTTTGACGTGTTTGAGTTTTGCAAAAAACTGCGACAGAACCGGCCGCCGCCGTACCAGTGCCCACTAGAGAAGTGTGACAAAGTATACAAGAGCTTATGTGGGTTGCAATACCATCTAGTGAACTATGATCATGACAATCCTACACCCACTACGCCAACAGTCACGAACAATCGTAAGAAGGGTAGAGTTAGGGCAGCTGTTCCCACCGGGGACATAGCTTTGCAAAGCCCTCCGAAAGAAGCTTTAACTTTTGCAGAAGCCCAAAAGGTGGTTCAGTTTGAAATAGATGGAAAAATTAGCAGAATTCCCATAGATCAACCTTTGTCAGTAATGTCATTGGAGGAGTGGGAGAAAAAGAACGCTGAACTTGAAAAACCTTTACCTATTGTAGAGCCCCCATCAGAGCCTCATGTGAAATTGCCTGAGGCCAGTTTCAAGTTAATTGAAGACTACAATGATCGAGTTAGTGATGCACCTGCAAGGCCAAACGCTTATATCAGATTTATTGAAAAATCAGCTGAGGAGCTTGACGGTGAAGTAGAATATGATGTTGATGAAGAAGACACAGCTTGGCTGGCTTTAATAAATAAGCAAAGACTTAAGCAGGGACTGCCACAAGTGTCAGTTGATACATTGGAATTACTCATGGATAGATTAGAAAAAGAGTCATATTTTCAGGCAACTCAAAGTGGGCAACAACCAGCGGCAACGGTTGATGAAGATGCTGTATGTTGTATTTGCATGGATGGCGAGTGTCAGAACACAAATGTGATATTGTTCTGTGACATGTGTAACCTTGCTGTGCATCAGGATTGTTATGGGGTGCCATACATACCTGAGGGACAGTGGCTCTGCAGGCGGTGCTTGCAGTCACCATCCCGCCTTGTCAACTGTGTATTATGTCCCAATACTGGAGGAGCATTCAAACAAACAGATCAGGGAACTTGGGCTCATGTTGTGTGTGCATTGTGGATACCGGAAGTGCGATTTGCTAATACAGTCTTTCTGGAACCAATTGATTCAATTGAAATGATCCCGGCGGCTCGTTGGAAGTTACAATGTATGGTTTGCAAGCAGAGGGGAGTTGGCTCTTGCATACAGTGTCATAAGAGTAACTGTTATTCAGCTTTTCATGTGACTTGTGCACAACAAGCTGGACTTTATATGAAAATGGAAGCGGCCGGATCTGGCCGGGACCCAAGCCAGCCGGTTCAGGTAGCGAAAATGGCGTACTGCGACGCGCACACTCCGGCGCATGTCCTACAAGAGAGACGAGCCAGGGACTCGGACAACGATTCTAAATGCAACGACCTCAATGCAGTGAGACAGAAAGGACGGGATAAAATCAAACAGGCACGTCGCGTGTTAGCAATGAAACGAACTTGGGCCCCGGTCGTGTTAGTACCGACTTTGCCGGCCGAGCGCGTGGCGGACGTGGCCCAGTTGGCCCAGGGTCCGCCCGCCGCCAGGGCCCAGCTCATGAAGCGACTCCTCGCTTACTGGACCCTGAAACGGCACAGCAGGAACGGTGTGCCGCTGTTGAGGAGACTGCAGAGCTTGACGACCAATCATGGCAGTAGAGGCATACAAGACGCAGCTGTCAATGTACGAGAGCTGTGTAATCAGTTGAAGTATTGGCAGAGAATACGACAAGATTTGGAACGCGCAAGATTGCTGTGTGAGCTGGTACGTAAACGCGAGCGTCTGAAGGCGGAGTACACCCGCGTGTGGGAGCGCTGCTTCCTTCACTCGCTGCGACCCGAGCGGGCCGTGCTCCACAAGCTGCTGCGCTTGTTGCGCCAGAAGGACTCCAGCGATATATTCACGGAGCCGGTCGACTTGCAAGAGGTACCAGACTACAGTACAATAGTGAAACACCCCATGGACCTGAGCACGATGGAGAAGAAGCTGGACCGCGGCGCTTACAAGAACATTGATGACATCGAAGACGACTTCAAACTGATGATAGACAATTGTCTCGCGTATAACAATAAAGATACAGTGTTTTACAAGGCCGGTGTGAAGATGCGCGAGCAATGCGCGCCGGTATTCCGTCAGGCGCGCCGCGACGTGGCGGCCGCGGGACTCCGCCACCTCGCCGCGCGGTCCCGCGCCGCCAGCACCGACAGCGATCGTACTCTAGATACGAGAAGCGAACGTGGCGTGTCCGTAGCGCGCAGCGAAGGCGGCCGCAGCAAAGACTCGCCCATCAGAGACTCGGCTGACGAGAATAATGCTCGCGACTCGTCACCGTCGGCACGTTCCGTCCGTTCGACGAGCAAGGTGAACCGGAACTGGTGGCGGGGTCGCGGGGCGGGGCGGGGATCGGCGAGGGGGGCGCGCGGGAAGCGCGGAGGGCGCACCAAAAGGGGGAGGGGACGCGCCGCGCAGACTCCTGCCGAGCGACCCACAGTACAAGACAACGAAACGGCGACGTCGGGCTCCGAGACTCCAGTGCCGCCAAGAAAAAGCGTTGAGCGTACACAAAAACTAGCCACCCCTGAGAAGTCGCCGACCAAAGTCACCGAGGGTACTCCGTCGTCCGGTCTAGGATTATTGGGCGGTCTACGAAAGCCTACTTTATTGGTGACGCCGTCATCAGTCGCCACACCACCAAAGAGCTTTGGATCTGATGCTTCACTGCCAACGTTGTCGGCGAGCCTCGGCCGCTCCGGACTGGATCCGTCGCCGAAGAAGAAAGGCCGGGGCAGACCCAGGAAACAGGACAAAGACAAGTCCGTCTCCTCACCGGATTTGTTTAGATCTACGTTGCCGGGAGCCGACGGTAAAGCCACGCCGGTTCCAGCGTCGTTCTTACAGTACCGCGGCCCAACAGGAGAAGTCGGTTCTGACAGTGACCTAGCTCTTTCTAGATCCTCGAGCAGCAGCTCCGCCTGGTCGCAGTCCTGTTCGTCGTGCACTCATTACGACGACGAGAATGTTTCGGATCACTCGTGCTCGATCAGTTCCACCGATGGTTCGAGTTACAACGAAACGATGGATTCTAATATGGAGGCTGGCAGCGGACCAGAACGTCGCCGCACCAGGCGAGCTGCGCACACGGACGCATCCGATAATGAACCTCTCACTCCTGTTAAGGGTCGCGGCACAAGATCGTCGATGTCAAAAACACCAGTGAAGAGTGGCCAGACTGAACTACTCTTGGAACCTTTACAACTCGTTTGGGCGAAGTGCAGAGGCTACCCCTGGTATCCGGCGCTGATCATCGACCCGAAAATGCCGAAAGGTTTCATCTACAACGGGGTGCCGCTTCCCGTTCCGCCTCAAGACGTATTGAACTTGAAGAAGAACCACTCCCACGAGCCCATACTTTATTTGGTGCTGTTTTTCGACGTTAAAAGAACTTGGCAGTGGTTACCACCTAATAAACTGGAGCCCCTGGGCCTCGATAAGAGCGTTGACCAAGCGAAGCTAGTGGAATCCCGGAAGCCTACCGATAGAAAAGCGGTGAAGAAAGCGTACGGTGACGCCATGCAATTCAGGAAACAAGTGGACGGTGAAGATAAATGA
Protein
MGLDFDVFEFCKKLRQNRPPPYQCPLEKCDKVYKSLCGLQYHLVNYDHDNPTPTTPTVTNNRKKGRVRAAVPTGDIALQSPPKEALTFAEAQKVVQFEIDGKISRIPIDQPLSVMSLEEWEKKNAELEKPLPIVEPPSEPHVKLPEASFKLIEDYNDRVSDAPARPNAYIRFIEKSAEELDGEVEYDVDEEDTAWLALINKQRLKQGLPQVSVDTLELLMDRLEKESYFQATQSGQQPAATVDEDAVCCICMDGECQNTNVILFCDMCNLAVHQDCYGVPYIPEGQWLCRRCLQSPSRLVNCVLCPNTGGAFKQTDQGTWAHVVCALWIPEVRFANTVFLEPIDSIEMIPAARWKLQCMVCKQRGVGSCIQCHKSNCYSAFHVTCAQQAGLYMKMEAAGSGRDPSQPVQVAKMAYCDAHTPAHVLQERRARDSDNDSKCNDLNAVRQKGRDKIKQARRVLAMKRTWAPVVLVPTLPAERVADVAQLAQGPPAARAQLMKRLLAYWTLKRHSRNGVPLLRRLQSLTTNHGSRGIQDAAVNVRELCNQLKYWQRIRQDLERARLLCELVRKRERLKAEYTRVWERCFLHSLRPERAVLHKLLRLLRQKDSSDIFTEPVDLQEVPDYSTIVKHPMDLSTMEKKLDRGAYKNIDDIEDDFKLMIDNCLAYNNKDTVFYKAGVKMREQCAPVFRQARRDVAAAGLRHLAARSRAASTDSDRTLDTRSERGVSVARSEGGRSKDSPIRDSADENNARDSSPSARSVRSTSKVNRNWWRGRGAGRGSARGARGKRGGRTKRGRGRAAQTPAERPTVQDNETATSGSETPVPPRKSVERTQKLATPEKSPTKVTEGTPSSGLGLLGGLRKPTLLVTPSSVATPPKSFGSDASLPTLSASLGRSGLDPSPKKKGRGRPRKQDKDKSVSSPDLFRSTLPGADGKATPVPASFLQYRGPTGEVGSDSDLALSRSSSSSSAWSQSCSSCTHYDDENVSDHSCSISSTDGSSYNETMDSNMEAGSGPERRRTRRAAHTDASDNEPLTPVKGRGTRSSMSKTPVKSGQTELLLEPLQLVWAKCRGYPWYPALIIDPKMPKGFIYNGVPLPVPPQDVLNLKKNHSHEPILYLVLFFDVKRTWQWLPPNKLEPLGLDKSVDQAKLVESRKPTDRKAVKKAYGDAMQFRKQVDGEDK

Summary

Uniprot
A0A212FMN6  
Pubmed
22118469   
EMBL
AGBW02007651    OWR54996.1   
Proteomes
UP000007151   
Pfam
PF10513   EPL1        + More
PF00439   Bromodomain
PF00855   PWWP
Interpro
IPR019786   Zinc_finger_PHD-type_CS        + More
IPR019542   Enhancer_polycomb-like_N       
IPR036427   Bromodomain-like_sf       
IPR013087   Znf_C2H2_type       
IPR034732   EPHD       
IPR011011   Znf_FYVE_PHD       
IPR035502   BR140-rel_PWWD       
IPR013083   Znf_RING/FYVE/PHD       
IPR001965   Znf_PHD       
IPR019787   Znf_PHD-finger       
IPR000313   PWWP_dom       
IPR001487   Bromodomain       
SUPFAM
SSF47370   SSF47370        + More
SSF57903   SSF57903       
Gene 3D
1.20.920.10     3.30.40.10    
CDD
cd05839  BR140_related
ProteinModelPortal
A0A212FMN6  
PDB
5ERC     E-value=2.17039e-86,     Score=818

Ontologies

KEGG
101740687    K11348 bromodomain and PHD finger-containing protein 1 | (RefSeq) peregrin-like
GO
GO:0046872   GO:0003676   GO:0005515   GO:0008270   GO:0009058   GO:0016742   GO:0005737   GO:0006730   GO:0009258   GO:0016155   GO:0003824  

Topology

Length:
1180
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0
Exp number, first 60 AAs:
0
Total prob of N-in:
0.00000
outside
1  -  1180
 
 

Population Genetic Test Statistics

Pi
218.790993
Theta
161.508732
Tajima's D
1.155366
CLR
0.557711
CSRT
0.702164891755412
Interpretation
Uncertain
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