Gene

KWMTBOMO09596

Annotation

endonuclease-reverse_transcriptase_[Bombyx_mori]

Location

Bomo_Chr16(+):5020679-5022603      View in EpiBrowser

Full name

Integrin beta      

Location in the cell

Mitochondrial   Reliability : 2.431

CDS

ATGAAACAGCGAAGGGAAACTGCAGATGCTGCTCCGTCAGATAGAAAAACTATAAACACTAAAATCAAAAAACTGATTAGGCGTGACCTTCGCCAATTCAACACAACAAAGATTAAAGAGGCAATAGAACAAAACAAAGGCACCAAAGTGTTTATACGGCAGCAACAACTAGGCCGAAGCCATCTGACGAAGCTCAAAACTGCCGATGGAAGAACTGTTAACTCAAGATCAGAAGTCCTCACTGAAGTGGAGAACTACTACCGTAGTCTCTATGCCTCACATGCTCCCAAACCCTTTGCCCACCCAGAGAATGATCACCGAGCCCCTTTAGTCCGCCACTATACGGAAGACATACCCGACGTCAGTATAGAGGAGATAAGGGCTACTTTGGAACAGCTTAGAAATAACAGAGCTACAGGGGATGACGGAATTAGTACAGAATTGTTGAAAGCAAGTGGTACACCAGTTCTCAACCAATTATGCACAACGTTCAACACCGTCATCCAAAAAACGACTACACCGGAAGCCTGGAGCAAGGGTACTGTTATTCTTTTCTTTAAGAAGGGAGACCGTGCTCTGCTCAAAAACTACAGGCCTATTTCACTTCTTAGCCATATTTATAAGCTGTTCTCGAGAGTCCTTACAAATCGCTTGGCCTCTAGACTTGACGAGTTCCAACCTCCGGAACAGGCTGGGTTTCGCAAAGGCTACAGTACGGTAGACCACATCCACACGCTGAGACAGGTTATTCAGAAGACTGAAGAATACAATCGTCCTCTGTGTCTCGCGTTTGTGGACTACGAAAAAGCCTTCGACTCCATCGAAACTTGGGCTGTTCTGGAATCCTTACAGCGATGCCTAGTCGATTATCGGTACGTTGAGGTGTTGAAGAGTTTATATAAAGCCGCCAAAATGACAGTCCAGATCCAAAACCAGCAGACAAACCCGATTGAGCTTCACAGAGGGGTGAGACAGGGTGACGTTATATCGCCGAAGCTGTTCACTGCTGCTCTAGAGGATGTCTTCAAGACTCTGGACTGGAGTAAACTGGGCATCAATGTCAATGGCGAGTATCATTCACACCTCCGATTTGCGGACGATATCGTTATAATGGCAGAGTCGCTGGAGGATCTCAGCTGTATGCTAGGTGAGCTCAATGCCGCGTCACGACGTGTTGGCCTGGGAATGAATCTGGACAAAACTAAGGTCATGTTCAACGACCATATCATTCCTGGACCGGTAATAGTCGAATCTGCGGTACTCGAAGTTGTGTCTGAATACACCTATCTAGGCCAAATTATTCAGCTGGGCAGGGCCAACTTTGAGAAGGAAGGTGATAGGCGCATACAGTTGGGCTGGGCTGCGTATGGAAAACTCCGTCACATCTTGAACTCAGCAATCCCGCAATGCTTAAAGACAAAAGTTTTCAACGCTTGTGTGCTGCCGGTCATGACATATGGCGCTGAAACGTGGACATTAACCGTAGGTTTGGTCCGTAAGCTCAAAGTCGCTCAGCGTGCTATGGAAAGGTGTATGCTCGGAGTTTCTTTGATGGATCGAGTCAGAAATGATGAAATTCGTCAAAGAACCAAAGTAACCGACATAGTCCTAAAGGTTAGCAAGCTGAAGTGGCAATGGGCCGGACATACGTGTCGCAGAACCGATGGCCGATGGAGCAGACGTGTTCTGGACTGGAGACCGCGTACCGGTAAACGCAGCGTTGGGCGTCCCCCTGCCCGTTGGACCGATGACTTGCGGCGATATGCTGGGAGAGATTGGATGCGGAAGGCGGAGGATCGTTCATTGTGGCGGACTATGGGAGAGGCCTACATCCAGCAGTGGAGAGACACAGGCTGA

Protein

MKQRRETADAAPSDRKTINTKIKKLIRRDLRQFNTTKIKEAIEQNKGTKVFIRQQQLGRSHLTKLKTADGRTVNSRSEVLTEVENYYRSLYASHAPKPFAHPENDHRAPLVRHYTEDIPDVSIEEIRATLEQLRNNRATGDDGISTELLKASGTPVLNQLCTTFNTVIQKTTTPEAWSKGTVILFFKKGDRALLKNYRPISLLSHIYKLFSRVLTNRLASRLDEFQPPEQAGFRKGYSTVDHIHTLRQVIQKTEEYNRPLCLAFVDYEKAFDSIETWAVLESLQRCLVDYRYVEVLKSLYKAAKMTVQIQNQQTNPIELHRGVRQGDVISPKLFTAALEDVFKTLDWSKLGINVNGEYHSHLRFADDIVIMAESLEDLSCMLGELNAASRRVGLGMNLDKTKVMFNDHIIPGPVIVESAVLEVVSEYTYLGQIIQLGRANFEKEGDRRIQLGWAAYGKLRHILNSAIPQCLKTKVFNACVLPVMTYGAETWTLTVGLVRKLKVAQRAMERCMLGVSLMDRVRNDEIRQRTKVTDIVLKVSKLKWQWAGHTCRRTDGRWSRRVLDWRPRTGKRSVGRPPARWTDDLRRYAGRDWMRKAEDRSLWRTMGEAYIQQWRDTG

Similarity

Belongs to the integrin beta chain family.

Feature

chain  Integrin beta

Uniprot

D7F166   D7F157   D7F165   D7F164   D7F160   D7F159   + More
A0A437BHD1   D7F158   A0A3S2KX72   A0A3S2TAR4   A4KWF2   A4KWG0   A0A2W1BMB6   A0A437B0R4   A0A2G8JFM9   A0A2W1BLC9   W4YXJ0   A0A2G8K4F2   W4YXJ1   A0A2W1B5F8   D7F179   A0A2W1BCS2   D7F176   A0A1E1X2U1   A0A2W1BDX2   A0A023EXV2   A0A2H1VS24   D7F177   A0A2W1BZV1   A0A069DX96   A0A0K0FAW8   A0A016RYK0   A0A016RXU5   A0A023EWU8   A0A016VV56   A0A016V7H3   A0A016S1D2   A0A0P4VWD0   A0A016WPY4   A0A016WCB8   A0A016ULU9   D7F178   A0A016UWI5   A0A016UTS3   A0A016TIA8   A0A016S403   A0A016U784   A0A2H1VY30   A0A016WEQ1   A0A016WA79   A0A016UMK7   A0A016W5P9   A0A016S5B2   A0A016S795   A0A016VVN3   A0A016UUF2   A0A016THC6   A0A016VN75   A0A016V419   A0A016VGM4   A0A016VBB9   A0A016TH80   A0A016SSP6   A0A016T7J7   A0A016SG46   A0A016W4R1   A0A016TK11   A0A016RUR3   A0A016SGC3   A0A016SKW2   A0A016UGM6   A0A016VMK8   A0A016TXK2   A0A2H1WF27   A0A016SX67   A0A016RRX8   A0A016RV73   A0A016T805   A0A016S5A1   A0A2H2JFN0   A0A016VRX3   A0A016T590   A0A016WVQ3   A0A016UEM0   A0A016UN79   A0A016T5Z1   A0A016VPL5   A0A016SL25   A0A016VCD9   A0A016SWH8   A0A0N5C0B1   A0A016VEC1   W6NSV0   A0A016SLV8   A0A016T636  

Pubmed

20470440    17360547    28756777    29023486    28503490    25474469    + More
26334808    25730766    27129103   

EMBL

FJ265551    ADI61819.1    FJ265542    ADI61810.1    FJ265550    ADI61818.1    + More
FJ265549    ADI61817.1    FJ265545    ADI61813.1    FJ265544    ADI61812.1    RSAL01000057    RVE49824.1    FJ265543    ADI61811.1    RSAL01002130    RVE40575.1    RSAL01002362    RVE40503.1    EF113398    EF113401    ABO45231.1    EF113402    ABO45239.1    KZ150072    PZC74016.1    RSAL01000220    RVE44071.1    MRZV01002136    PIK34564.1    KZ149985    PZC75698.1    AAGJ04050748    MRZV01000899    PIK42833.1    AAGJ04144474    KZ150317    PZC71439.1    FJ265564    ADI61832.1    KZ150485    PZC70710.1    FJ265561    ADI61829.1    GFAC01005640    JAT93548.1    KZ150108    PZC73382.1    GBBI01004876    JAC13836.1    ODYU01004088    SOQ43598.1    FJ265562    ADI61830.1    KZ149907    PZC78256.1    GBGD01000453    JAC88436.1    JARK01001677    EYB83167.1    EYB83168.1    GBBI01004877    JAC13835.1    JARK01001340    EYC31295.1    JARK01001351    EYC23395.1    JARK01001655    EYB84321.1    GDKW01001596    JAI54999.1    JARK01000173    EYC41342.1    JARK01000388    EYC37469.1    JARK01001370    EYC16150.1    FJ265563    ADI61831.1    JARK01001362    EYC18843.1    EYC18844.1    JARK01001434    EYC02684.1    JARK01001639    EYB85201.1    JARK01001389    EYC11015.1    ODYU01004982    SOQ45402.1    JARK01000347    EYC38051.1    JARK01000460    EYC36749.1    EYC16151.1    JARK01000732    EYC35149.1    JARK01001626    EYB85833.1    JARK01001621    EYB86109.1    EYC30828.1    JARK01001361    EYC19034.1    JARK01001438    EYC02111.1    JARK01001344    EYC28218.1    JARK01001354    EYC21986.1    JARK01001346    EYC26784.1    JARK01001349    EYC24735.1    EYC02012.1    JARK01001517    EYB93530.1    JARK01001736    JARK01001462    JARK01001379    JARK01001338    EYB80775.1    EYB98943.1    EYC13646.1    EYC33347.1    JARK01001565    EYB89683.1    JARK01001337    EYC34625.1    JARK01001676    JARK01001446    JARK01001433    EYB83199.1    EYC01126.1    EYC02928.1    JARK01001711    EYB81734.1    JARK01001568    EYB89432.1    JARK01001543    EYB91353.1    JARK01001378    EYC13977.1    JARK01001343    EYC28635.1    JARK01001406    EYC07496.1    ODYU01008249    SOQ51673.1    JARK01001500    EYB95040.1    EYC28825.1    JARK01001730    EYB81048.1    JARK01001700    JARK01001393    EYB82228.1    EYC10181.1    JARK01001464    EYB98786.1    JARK01001630    EYB85641.1    JARK01001341    EYC29807.1    JARK01001473    EYB97806.1    JARK01000077    EYC43894.1    JARK01001380    EYC13322.1    EYC16376.1    JARK01001470    JARK01000204    EYB98082.1    EYC40602.1    JARK01001342    EYC29360.1    EYB91355.1    JARK01001348    EYC25050.1    JARK01001502    EYB94855.1    EYC25048.1    CAVP010058791    CDL95187.1    EYB91356.1    EYB98081.1    EYC40601.1   

Proteomes

UP000283053    UP000230750    UP000007110    UP000035680    UP000024635    UP000005237    + More
UP000046392    UP000025227   

PRIDE

D7F166    D7F157    D7F165    D7F164    D7F160    D7F159    + More
D7F158    D7F179    D7F176    D7F177    D7F178   

Pfam

PF14529   Exo_endo_phos_2        + More
PF00078   RVT_1
PF00362   Integrin_beta
PF01826   TIL
PF13520   AA_permease_2
PF10323   7TM_GPCR_Srv

Interpro

IPR000477   RT_dom        + More
IPR005135   Endo/exonuclease/phosphatase       
IPR036691   Endo/exonu/phosph_ase_sf       
IPR032695   Integrin_dom_sf       
IPR036465   vWFA_dom_sf       
IPR015812   Integrin_bsu       
IPR002035   VWF_A       
IPR002369   Integrin_bsu_VWA       
IPR036084   Ser_inhib-like_sf       
IPR002919   TIL_dom       
IPR020846   MFS_dom       
IPR002293   AA/rel_permease1       
IPR019426   7TM_GPCR_serpentine_rcpt_Srv       
IPR029052   Metallo-depent_PP-like       

SUPFAM

SSF56219   SSF56219        + More
SSF53300   SSF53300       
SSF69179   SSF69179       
SSF57567   SSF57567       

Gene 3D

3.60.10.10     3.40.50.410     3.60.21.10    

CDD

cd06174  MFS

ProteinModelPortal

D7F166   D7F157   D7F165   D7F164   D7F160   D7F159   + More
A0A437BHD1   D7F158   A0A3S2KX72   A0A3S2TAR4   A4KWF2   A4KWG0   A0A2W1BMB6   A0A437B0R4   A0A2G8JFM9   A0A2W1BLC9   W4YXJ0   A0A2G8K4F2   W4YXJ1   A0A2W1B5F8   D7F179   A0A2W1BCS2   D7F176   A0A1E1X2U1   A0A2W1BDX2   A0A023EXV2   A0A2H1VS24   D7F177   A0A2W1BZV1   A0A069DX96   A0A0K0FAW8   A0A016RYK0   A0A016RXU5   A0A023EWU8   A0A016VV56   A0A016V7H3   A0A016S1D2   A0A0P4VWD0   A0A016WPY4   A0A016WCB8   A0A016ULU9   D7F178   A0A016UWI5   A0A016UTS3   A0A016TIA8   A0A016S403   A0A016U784   A0A2H1VY30   A0A016WEQ1   A0A016WA79   A0A016UMK7   A0A016W5P9   A0A016S5B2   A0A016S795   A0A016VVN3   A0A016UUF2   A0A016THC6   A0A016VN75   A0A016V419   A0A016VGM4   A0A016VBB9   A0A016TH80   A0A016SSP6   A0A016T7J7   A0A016SG46   A0A016W4R1   A0A016TK11   A0A016RUR3   A0A016SGC3   A0A016SKW2   A0A016UGM6   A0A016VMK8   A0A016TXK2   A0A2H1WF27   A0A016SX67   A0A016RRX8   A0A016RV73   A0A016T805   A0A016S5A1   A0A2H2JFN0   A0A016VRX3   A0A016T590   A0A016WVQ3   A0A016UEM0   A0A016UN79   A0A016T5Z1   A0A016VPL5   A0A016SL25   A0A016VCD9   A0A016SWH8   A0A0N5C0B1   A0A016VEC1   W6NSV0   A0A016SLV8   A0A016T636  

PDB

6AR3     E-value=0.0125294,     Score=93

KEGG

101737796    no KO assigned | (RefSeq) craniofacial development protein 2-like

GO

GO:0003964   GO:0004519   GO:0016021  

PANTHER

PTHR10082  

Subcellular location

Membrane  

Length:

618

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.29018

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00923

outside

1  -  618

 

 

Pi

404.986635

Theta

184.986435

Tajima's D

3.613704

CLR

0

CSRT

0.995750212489376

Interpretation

Uncertain