SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO09594  Validated by peptides from experiments
Annotation
PREDICTED:_vanin-like_protein_2_isoform_X2_[Bombyx_mori]
Full name
Vanin-like protein 2      
Location in the cell
PlasmaMembrane   Reliability : 3.649
 

Sequence

CDS
ATGAAAGGTTTTATCTTTTGTTTATTATTCGTGTCGCTAACGAAAACTAGCTTTCAAAAGTCAACACCCCAGGATAGCCAGTACGTAGCAGCGGCTGTTGAATATATCGTGTCAGGTGATGTCGATCAAAATATCCGTAACTACGTTCGTTACATTGAGGAAGCTGCTAAACAGAATGCGGACATCATAGTTTTCCCCGAACTGACCCTGACCAACAGAAGCACAAGTTTTGTAGCGCCGTTACATGGTATTTTAAAACAATACCCGATACCTGCATTACATCCGAACTTATACGATAACATTATGGTGTCAATATCGGCGGCTGCAAGAACTAATCAAATCTACGTTGTGGTCAATGGCCGAGAGCTCATGGACTGCACTAAGAATGACACCGGCGAACCTTGTCCGGAGCTGAAGGAGTATATCTTTAATACAAACGTTGTGTTTGATAGGAACGGAGCGGTTATTGATCGGTATCGCAAGATCAATCTTTTCGGGGAAAGTTCGCACACGCCTGCTCTGACGCCGGACTTGGGCTACTTCGAAACCGATTTTGGGGTTAAATTCAGTCACTTCATCTGCTTCGACTTAATGTTTCAAGTGCCAGCGGTGCAGTCCGTGCAAAAACTGAAGGTCACCGATGTATTGTTTACCACAATGTGGTTCTCCGAATTGCCTTATTTAACCGCTGTGCAAATACAAGAGGCCTATGCTTACGAAATGAACATAAATTTCATTGCGGCCGGCGCGAACAATGTCAGGATCGGTTCTGCAGGATCGGGAATATATTCTGGACGAGCTGGCGCGTTGGTTAGCATCATGCCAGGAGTGCCGACCACGCGCCTTCTCGTCTCCAGAGTACCGAAAATTCCCGGACAAATTTCCGGACAATACCCTGGGCCGATTTATGACAATCCATCAGATCACGACAATTTGAAACTGATCACCGATCCATCTTTGGTCTCGCACGTCAGCAAGTTACTCGTGCCCGGCTTCCAGGAGTTTACGCTCACGGATAAAGACGTCAGCTGCACGTTCAGAGTTAGGCTGAACTACGGAACAGGAGAGACGCACTATAAATACAGAGCCGTTGCGTTCAGTGGCGTGAGATCATTCTCGGGAGCTGCCACCGGCGGTAACAGGGTCTGTGGTATTGTAGCCTGCACCGGAGAAACCTTAGACACCTGCGGAAAGAGATTCGACAAATACAATTCCACGTCATTTGGTAACTTTGAAGAATTGGAAATATTAGGAACAATGCCTACATCGATTACAGATGCAGCCTTGAGTGCGGAAAATTCGGTAGTTTACCCCGTCTCAGTGAAAAGTTCTTTAATGCCCTTAGAGCCCACGACTTACACTTTCAATAAAGTAGTGAACACGCAGATTACTTTATACGACTATGCCTTGAGTGTCCATGAAGTTGAGTTGTACAGTTTCGCTCTGTGGGGCCGTGTCTTTGCCACGGACGGTGACGAAGCCACACCGCCGTTCAACTCTTCCAACACACTTGGTCCTGTACGATTGAACCACTTAATACTATTAACAGGACTGTTTTTATTTAAGAAATATTTAATTTAA
Protein
MKGFIFCLLFVSLTKTSFQKSTPQDSQYVAAAVEYIVSGDVDQNIRNYVRYIEEAAKQNADIIVFPELTLTNRSTSFVAPLHGILKQYPIPALHPNLYDNIMVSISAAARTNQIYVVVNGRELMDCTKNDTGEPCPELKEYIFNTNVVFDRNGAVIDRYRKINLFGESSHTPALTPDLGYFETDFGVKFSHFICFDLMFQVPAVQSVQKLKVTDVLFTTMWFSELPYLTAVQIQEAYAYEMNINFIAAGANNVRIGSAGSGIYSGRAGALVSIMPGVPTTRLLVSRVPKIPGQISGQYPGPIYDNPSDHDNLKLITDPSLVSHVSKLLVPGFQEFTLTDKDVSCTFRVRLNYGTGETHYKYRAVAFSGVRSFSGAATGGNRVCGIVACTGETLDTCGKRFDKYNSTSFGNFEELEILGTMPTSITDAALSAENSVVYPVSVKSSLMPLEPTTYTFNKVVNTQITLYDYALSVHEVELYSFALWGRVFATDGDEATPPFNSSNTLGPVRLNHLILLTGLFLFKKYLI

Summary

Description
Probable hydrolase.
Similarity
Belongs to the carbon-nitrogen hydrolase superfamily. BTD/VNN family.
Keywords
Complete proteome   Glycoprotein   Hydrolase   Reference proteome   Signal  
Feature
chain  Vanin-like protein 2
EMBL
BABH01003785    BABH01003786    BABH01003787    BABH01003788    BABH01003789    BABH01003790    + More
AK401492    BAM18114.1    RSAL01000051    RVE50259.1    ODYU01007067    SOQ49508.1    NWSH01000190    PCG78601.1    KQ460323    KPJ15957.1    AGBW02007651    OWR54999.1    RSAL01000066    RVE49386.1    JTDY01000923    KOB75417.1    GANO01002813    JAB57058.1    GFDF01001117    JAV12967.1    GBYB01010610    GBYB01010611    GBYB01010612    GBYB01010613    JAG80377.1    JAG80378.1    JAG80379.1    JAG80380.1    GFDF01001276    JAV12808.1    GAMD01000594    JAB00997.1    GFDL01015166    JAV19879.1    UFQS01000100    UFQT01000100    SSW99553.1    SSX19933.1    DS232811    EDS45922.1    GEZM01056460    JAV72680.1    DS231994    EDS30859.1    GGFK01005833    MBW39154.1    SSW99554.1    SSX19934.1    CVRI01000057    CRL02200.1    AAAB01008848    APCN01003536    GFDG01000316    JAV18483.1    UFQS01000661    UFQT01000661    SSX05886.1    SSX26245.1    KK852461    KDR23447.1    GGFL01006667    MBW70845.1    GGFL01006668    MBW70846.1    EAA07047.4    GGFL01006666    MBW70844.1    ADMH02000540    ETN66031.1    JXUM01046668    JXUM01046669    KQ561486    KXJ78426.1    AXCN02001762    NEVH01021232    PNF19697.1    AJVK01063153    NNAY01003246    OXU19739.1    CH477371    EAT42426.1    UFQS01002349    UFQT01002349    SSX13837.1    SSX33257.1    CVRI01000007    CRK88417.1    UFQS01000702    UFQT01000702    SSX06299.1    SSX26653.1    GL766908    EFZ14468.1    KQ976424    KYM88554.1    GEZM01068261    JAV67063.1    EZ424148    ADD20424.1    CCAG010018793    EDS30858.1    EDS45921.1    NEVH01013232    PNF29620.1    GAMC01005271    JAC01285.1    GL888275    EGI63409.1    JXJN01020343    JXJN01009882    JRES01000767    KNC28469.1    ADTU01024337    CH477249    EAT46106.1    EFZ14498.1    GDHF01001335    JAI50979.1    KQ981153    KYN09053.1    EDS30860.1    CH916371    EDV92302.1    GAKP01009528    JAC49424.1    KNC28470.1    AE014298    AAN09160.1    BT124870    ADG03455.1    PYGN01000451    PSN46120.1    GL434853    EFN74417.1    GDHF01016981    JAI35333.1    GAMC01000361    JAC06195.1    CM000366    EDX17231.1    GDHF01015685    JAI36629.1    GALX01003996    JAB64470.1   
Pfam
PF00795   CN_hydrolase        + More
PF00046   Homeodomain
Interpro
IPR036526   C-N_Hydrolase_sf        + More
IPR003010   C-N_Hydrolase       
IPR040154   Biotinidase/VNN       
IPR012101   Biotinidase-like_euk       
IPR001356   Homeobox_dom       
IPR009057   Homeobox-like_sf       
IPR017970   Homeobox_CS       
SUPFAM
SSF56317   SSF56317        + More
SSF46689   SSF46689       
Gene 3D
PDB
4CYY     E-value=1.03413e-31,     Score=343

Ontologies

Topology

Subcellular location
Nucleus  
SignalP
Position:   1 - 18,         Likelihood:  0.966428
 
 
Length:
526
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.26218
Exp number, first 60 AAs:
0.00017
Total prob of N-in:
0.00026
outside
1  -  526
 
 

Population Genetic Test Statistics

Pi
239.24359
Theta
26.573368
Tajima's D
0.632447
CLR
104.771718
CSRT
0.554522273886306
Interpretation
Uncertain

Multiple alignment of Orthologues

 
 

Gene Tree

 
 
Peptides ×
Source Sequence Identity Evalue
26280517 KSDQVEIITNK 100.00 8e-12
28467696 KSTISDMAIATGGVVFGDDANIIK 100.00 8e-12
29197581 INYGTGETFPHFR 100.00 8e-12
26822097 INYGTGETFPHFR 95.83 9e-12
26280517 IPADIVFIIR 95.83 9e-12
28467696 IPGIPINK 95.83 9e-12
28556443 VQLPSSFYALSPEEFK 100.00 0.004
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