Silkworm Genome Informatics Database

Gene

KWMTBOMO09569 Validated by peptides from experiments

Pre Gene Modal

BGIBMGA012833

Annotation

eukaryotic_translation_initiation_factor_4H_[Bombyx_mori]

Location

Bomo_Chr16(+):4488902-4491965 View in EpiBrowser

Location in the cell

Nuclear Reliability : 2.408

CDS

ATGGCAGGTCGTAGCGGTTTTGACGATATTAATTCCAGGGGCTTTGGCGGCGGCAGGCGAACTACTGGGGGCCGTCCTCTACCTTCAGAGCCTCCATATAAGGCGTACGTTGGAAATTTGCCCTCCGGAATTATTCAAGGCGATATAAACAGAATTTTTCCTGATCTATCTATAAAAAATGTCAGATTGGTTATGGATAAAGAGACAGACAAATTCAAAGGATTTTGCTATGTAGAATTTGAATATCTCGAAGATTTGATGAAAGCAATAGATTTGAATGGGATTATTAACGTAGATGGTAATATATTAAAAATTGATGTCGCTGAAGAAAAAAGAAACGACCGGGGAGGTGGTTTCGATCGTGGTCGGAGAGACGGCGGTCGCGATGGTGGACGAGGAGGTGGCGGCGGTAGTGGCGGCGGCGGGTTCAGGCGCGAGGGGCGTGGTACGTACGACCACTTCGAAGCATCCGACCGCAGGCTGCCGCGCCATCAGGGTGGAGGGTTCACACATGGTAACATTCACATACTAACATATGGAAACAGCTACTGCTTATAA

Protein

MAGRSGFDDINSRGFGGGRRTTGGRPLPSEPPYKAYVGNLPSGIIQGDINRIFPDLSIKNVRLVMDKETDKFKGFCYVEFEYLEDLMKAIDLNGIINVDGNILKIDVAEEKRNDRGGGFDRGRRDGGRDGGRGGGGGSGGGGFRREGRGTYDHFEASDRRLPRHQGGGFTHGNIHILTYGNSYCL

Uniprot

H9JTH1 A0A2A4J4E5 A0A2A4J4N8 A0A2H1VEE7 A0A437BIJ0 A0A194QK19 + More
A0A194RF96

Pubmed

19121390 26354079

EMBL

BABH01003835 NWSH01003390 PCG66384.1 PCG66383.1 ODYU01002091 SOQ39161.1 + More
RSAL01000051 RVE50247.1 KQ458756 KPJ05255.1 KQ460323 KPJ15975.1

Proteomes

UP000005204 UP000218220 UP000283053 UP000053268 UP000053240

PRIDE

H9JTH1

Pfam

PF00076 RRM_1

Interpro

IPR012677   Nucleotide-bd_a/b_plait_sf        + More
IPR000504   RRM_dom
IPR035979   RBD_domain_sf

SUPFAM

SSF54928 SSF54928

Gene 3D

3.30.70.330

ProteinModelPortal

H9JTH1 A0A2A4J4E5 A0A2A4J4N8 A0A2H1VEE7 A0A437BIJ0 A0A194QK19 + More
A0A194RF96

PDB

2DNG E-value=5.87409e-22, Score=253

KEGG

733087 no KO assigned | (RefSeq) eukaryotic translation initiation factor 4H

GO

GO:0003723 GO:0003743 GO:0003676 GO:0000166 GO:0007608 GO:0016020 GO:0016740 GO:0006108 GO:0030060 GO:0016615 GO:0000049 GO:0016876

Length:

185

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.0026

Exp number, first 60 AAs:

0.00037

Total prob of N-in:

0.05955

outside

1 - 185

Pi

132.224465

Theta

191.468687

Tajima's D

-1.045418

CLR

462.415037

CSRT

0.138043097845108

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics