Gene

KWMTBOMO09562

Pre Gene Modal

BGIBMGA013017

Annotation

cellular_retinaldehyde-binding_protein_[Bombyx_mori]

Location

Bomo_Chr16(-):4222308-4240285      View in EpiBrowser

Location in the cell

Cytoplasmic   Reliability : 3.594

CDS

ATGAAGATCAAACAAGAACTTTTAGAGCAGCCCACGGGTGAACTCTGGCAGGCTATACGAGTGGAGCTGAAGGAGGATGCTAAAACCAAGGATCAGGACTTGGCTGCTATTAGAGAATGGTTGAAGAAACAGCCACATCTACCTGATGATTGGGAAACGGGGCCGCTGATGACATTCCTACGCGGCAGCAGCTTTTCCTTGGAGAAGTGTAAACGGAAGCTGGACATGTATTTCACTATGAGGGCAGCGTGCCCAGAATTTTTCACCAAACGTGACGCAACCAGGCCGGAATTGACGGAGATCTTAACCAATAAAATAGAAGGACCACCGCTACCTGGAATCACGCCTAATGGCAGAAGGGTCACAGTGTGCAGAGGTATCGACCAAAACTTGGATGCCCAACAAATCATCGATACACTCAAACTAGCTCTTATGATTGGTGATGTAAGGCTGACGGAGGAAAAGGAAGGAGTCGCAGGAGACATCTATGTGCTGGACGCAGCTGTTCTCGGGCCCAGCATACTGGCAAAACTCTCTGCTGCTACCATCAAGAAATTTATGATCTGTGTTCAGGAAGCCTACCCGATCAAATTGAAAGAGGTCCACATCATAAACACATCACCGCTGGTAGAGCGTTTCGTCAATTTCGTTAAGCCATTCCTTAAGGAAAAAATAAGGAAAAGGATTTTCATACACAAAGAAATCAAAGATTTATACAAGTACGTACCCCAGGAGATGTTACCTGAAGAGTACGGCGGCCAGTGCAGTACGATGACCCTATTGCAAGAGCAATGGAAGTTGAAACTGCAAGAATATCGAGAGTGGTTTAAGCAACAGGACTCCATAATTGCCAACGAGTCCTTGCGACCTGGACGCCCTACTAACTACGACGAACTCTTCGGAATCGACGGCTCATTCAGACAATTAGCCATCGACTGA

Protein

MKIKQELLEQPTGELWQAIRVELKEDAKTKDQDLAAIREWLKKQPHLPDDWETGPLMTFLRGSSFSLEKCKRKLDMYFTMRAACPEFFTKRDATRPELTEILTNKIEGPPLPGITPNGRRVTVCRGIDQNLDAQQIIDTLKLALMIGDVRLTEEKEGVAGDIYVLDAAVLGPSILAKLSAATIKKFMICVQEAYPIKLKEVHIINTSPLVERFVNFVKPFLKEKIRKRIFIHKEIKDLYKYVPQEMLPEEYGGQCSTMTLLQEQWKLKLQEYREWFKQQDSIIANESLRPGRPTNYDELFGIDGSFRQLAID

Uniprot

Q1HQ95   H9JU05   A0A2H1V2R3   A0A0S2Z350   A0A2A4JN79   A0A2W1B842   + More
I4DM93   A0A194R296   A0A3S2NHT6   S4PY20   A0A212FMH3   A0A2H4RMQ6   I4DIS4   A0A194Q0B2   A0A2H4RMV6   A0A2H4RMW4   A0A212FMF6   A0A1E1W993   A0A194Q6G5   A0A2A4JLK9   A0A2H4RMR7   A0A3S2L872   A0A2H1WE11   H9JU04   A0A2H4RMR9   A0A0L7LLC8   A0A2W1BQL9   A0A3S2NT85   A0A2H4RMU2   A0A0S2Z3C6   A0A0S2Z324   A0A2A4JN64   A0A2H1V2T7   A0A212FBP0   I4DIV6   I4DMP5   H9JU03   A0A194Q1X2   A0A2H1WHQ3   A0A194R1G6   D2A5R3   A0A0N0BHJ4   A0A232ELM6   K7ITZ4   A0A2A3EKL1   A0A182P062   F5HKV7   A0A1D6TJS6   A0A182HSP7   A0A182UXR4   A0A182LER6   A0A182XAU9   Q7QCC6   A0A182HSP6   A0A087ZQ01   A0A154PFM2   A0A182TL25   A0A182FNW7   A0A182YQJ3   A0A182JUT9   B0WR71   A0A182VWX1   A0A182JE45   A0A0L7QV98   A0A182G0T6   A0A182M982   A0A182RS71   A0A182Q192   A0A023EQY2   A0A182NRL3   Q178U4   W5JP64   Q178U5   A0A158NWN2   A0A310SGC2   A0A1B6L485   J3JUN4   A0A151WY48   A0A2J7Q755   A0A195ECA1   A0A2S2R1Y2   A0A336MFQ7   A0A1B6CGR6   J9JJD5   A0A3L8E2J1   A0A2H8TX43   A0A1J1ICM2   E0VHP2   A0A1B0CFJ4   A0A1B0DII6   A0A1L8DZ37   A0A1B6HJI9   E2BJ28   A0A194R1R7   A0A1Y1L6E1   A0A026W000   A0A151I5F0   A0A0L0CDT5   A0A151JU22   A0A0A1WYR9  

Pubmed

19121390    25684408    28756777    22651552    26354079    23622113    + More
22118469    29136137    26227816    18362917    19820115    28648823    20075255    12364791    20966253    14747013    17210077    25244985    26483478    24945155    17510324    20920257    23761445    21347285    22516182    30249741    20566863    20798317    28004739    24508170    26108605    25830018   

EMBL

DQ443157    ABF51246.1    BABH01003856    ODYU01000400    SOQ35121.1    KT943548    + More
ALQ33306.1    NWSH01001060    PCG72860.1    KZ150230    PZC71999.1    AK402411    BAM19033.1    KQ460878    KPJ11639.1    RSAL01000093    RVE47937.1    GAIX01004053    JAA88507.1    AGBW02007651    OWR54931.1    MG434610    ATY51916.1    AK401192    BAM17814.1    KQ459582    KPI98996.1    MG434660    ATY51966.1    MG434662    ATY51968.1    OWR54932.1    GDQN01007486    JAT83568.1    KPI98995.1    PCG72861.1    MG434634    ATY51940.1    RVE47936.1    ODYU01007975    SOQ51196.1    BABH01003855    MG434623    ATY51929.1    JTDY01000749    KOB76021.1    KZ150073    PZC74013.1    RVE47935.1    MG434646    ATY51952.1    KT943552    ALQ33310.1    KT943554    ALQ33312.1    PCG72852.1    ODYU01000399    SOQ35119.1    AGBW02009293    OWR51150.1    AK401224    BAM17846.1    AK402563    BAM19185.1    BABH01003854    KPI98994.1    ODYU01008739    SOQ52601.1    KPJ11638.1    KQ971345    EFA05407.1    KQ435750    KOX76354.1    NNAY01003544    OXU19231.1    KZ288227    PBC31792.1    AAAB01008859    EGK96859.1    APCN01000318    EAA08040.3    KQ434893    KZC10617.1    DS232052    EDS33245.1    KQ414731    KOC62381.1    JXUM01037643    KQ561136    KXJ79606.1    AXCM01007540    AXCN02000004    GAPW01002564    JAC11034.1    CH477359    EAT42708.1    ADMH02000502    ETN66182.1    EAT42707.1    ADTU01002976    KQ760241    OAD61294.1    GEBQ01021517    JAT18460.1    BT126949    AEE61911.1    KQ982651    KYQ52830.1    NEVH01017447    PNF24414.1    KQ979074    KYN22850.1    GGMS01014782    MBY83985.1    UFQT01000848    SSX27633.1    GEDC01024699    JAS12599.1    ABLF02025720    QOIP01000001    RLU26595.1    GFXV01006287    MBW18092.1    CVRI01000047    CRK97300.1    DS235171    EEB12928.1    AJWK01010115    AJVK01062615    GFDF01002388    JAV11696.1    GECU01032846    JAS74860.1    GL448558    EFN84178.1    KPJ11637.1    GEZM01069094    JAV66647.1    KK107522    EZA49342.1    KQ976434    KYM87194.1    JRES01000531    KNC30401.1    KQ981799    KYN35701.1    GBXI01010627    JAD03665.1   

Proteomes

UP000005204    UP000218220    UP000053240    UP000283053    UP000007151    UP000053268    + More
UP000037510    UP000007266    UP000053105    UP000215335    UP000002358    UP000242457    UP000075885    UP000007062    UP000076407    UP000075840    UP000075903    UP000075882    UP000005203    UP000076502    UP000075902    UP000069272    UP000076408    UP000075881    UP000002320    UP000075920    UP000075880    UP000053825    UP000069940    UP000249989    UP000075883    UP000075900    UP000075886    UP000075884    UP000008820    UP000000673    UP000005205    UP000075809    UP000235965    UP000078492    UP000007819    UP000279307    UP000183832    UP000009046    UP000092461    UP000092462    UP000008237    UP000053097    UP000078540    UP000037069    UP000078541   

PRIDE

Q1HQ95    H9JU05    H9JU04    H9JU03   

Pfam

PF00650   CRAL_TRIO

Interpro

IPR036273   CRAL/TRIO_N_dom_sf        + More
IPR036865   CRAL-TRIO_dom_sf       
IPR001251   CRAL-TRIO_dom       
IPR011074   CRAL/TRIO_N_dom       

SUPFAM

SSF46938   SSF46938        + More
SSF52087   SSF52087       

Gene 3D

3.40.525.10    

CDD

cd00170  SEC14

ProteinModelPortal

Q1HQ95   H9JU05   A0A2H1V2R3   A0A0S2Z350   A0A2A4JN79   A0A2W1B842   + More
I4DM93   A0A194R296   A0A3S2NHT6   S4PY20   A0A212FMH3   A0A2H4RMQ6   I4DIS4   A0A194Q0B2   A0A2H4RMV6   A0A2H4RMW4   A0A212FMF6   A0A1E1W993   A0A194Q6G5   A0A2A4JLK9   A0A2H4RMR7   A0A3S2L872   A0A2H1WE11   H9JU04   A0A2H4RMR9   A0A0L7LLC8   A0A2W1BQL9   A0A3S2NT85   A0A2H4RMU2   A0A0S2Z3C6   A0A0S2Z324   A0A2A4JN64   A0A2H1V2T7   A0A212FBP0   I4DIV6   I4DMP5   H9JU03   A0A194Q1X2   A0A2H1WHQ3   A0A194R1G6   D2A5R3   A0A0N0BHJ4   A0A232ELM6   K7ITZ4   A0A2A3EKL1   A0A182P062   F5HKV7   A0A1D6TJS6   A0A182HSP7   A0A182UXR4   A0A182LER6   A0A182XAU9   Q7QCC6   A0A182HSP6   A0A087ZQ01   A0A154PFM2   A0A182TL25   A0A182FNW7   A0A182YQJ3   A0A182JUT9   B0WR71   A0A182VWX1   A0A182JE45   A0A0L7QV98   A0A182G0T6   A0A182M982   A0A182RS71   A0A182Q192   A0A023EQY2   A0A182NRL3   Q178U4   W5JP64   Q178U5   A0A158NWN2   A0A310SGC2   A0A1B6L485   J3JUN4   A0A151WY48   A0A2J7Q755   A0A195ECA1   A0A2S2R1Y2   A0A336MFQ7   A0A1B6CGR6   J9JJD5   A0A3L8E2J1   A0A2H8TX43   A0A1J1ICM2   E0VHP2   A0A1B0CFJ4   A0A1B0DII6   A0A1L8DZ37   A0A1B6HJI9   E2BJ28   A0A194R1R7   A0A1Y1L6E1   A0A026W000   A0A151I5F0   A0A0L0CDT5   A0A151JU22   A0A0A1WYR9  

PDB

5MUE     E-value=7.49292e-13,     Score=178

KEGG

732889    no KO assigned | (RefSeq) cellular retinaldehyde-binding protein

GO

GO:0016021   GO:0016787   GO:0005215   GO:0005622   GO:0006810   GO:0050113   GO:0016740   GO:0006108   GO:0030060   GO:0016615   GO:0000049   GO:0016876  

Length:

312

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.0343900000000001

Exp number, first 60 AAs:

0

Total prob of N-in:

0.02503

outside

1  -  312

 

 

Pi

177.422675

Theta

156.909784

Tajima's D

0.853481

CLR

0.156939

CSRT

0.619469026548673

Interpretation

Uncertain