Silkworm Genome Informatics Database

Gene

KWMTBOMO09557

Pre Gene Modal

BGIBMGA013019

Annotation

PREDICTED:_uncharacterized_protein_LOC105842057_[Bombyx_mori]

Location

Bomo_Chr16(-):4158076-4160935 View in EpiBrowser

Transcription factor

HTH

Location in the cell

Nuclear Reliability : 3.727

CDS

ATGCCGAAGGTTACGGATGGAAAAAAATATACAAAAGCATATACAGAAGAAGATATAGAAAAAGCTTTGCAAGCCATAAAAAATGGAATGGGTAAGAAAACTGCTGCAAATAAATTTAATATCCCAAGAGCAACTTTGCAGTTCCGCCTATCCAACCAATTTGTCAAAAGTCGACCTGGTCCAGATACAGTTTTATCTAGTGCAGAAGAACAAGAGATAGTTAAATGGATAATTGCAGCTTGTAGAAAAGGATTTCCACGGCGTAAAGAGGATGTCATAAAGAGCGTCAAACTGTATTTGGATGAACATCCCAGACCAAACAGTTTTATAGATAATACACCAGGCGAGGGATGGTATAAATTATTTTTGAAGAGGCATCCTGAGCTTTCTATACGAACATCAGAGGCTGTAACTTCAGCAAGCTCAAAGTTGTCAGAGAAGCAAATTAGAAACTGGTTTACACAAGTAGAAGAATATCTGAAAGAAAATGATCTCTTTCATATTTTGAGTGATCCATCTAGAGTTTACAATGGGGATGAAACGAATTTTATTTTATGCCCAAAGAACACCAAAGTTATCGCTTTAAAGGGAACCAAACATGTGTATGAGGTAGATCACGCTCAGGCTAAATCATGTGTTACTGTAATGTTCACATTTTCGGCGGATGGTGTAACAACACCACCTATGATTATTTACCCTTTAAAGAGAATGCGACCTGAGATTCAAAAGTCTGTGCCTAGCGAGTGGGGTATTGGCTTGTCAGATAATGGATGGATGAAGGCGGAGCTTTTCATCCAGTACATACAGAATGTTCTGCATCCAGCGCTAATGAAGATGAATATCACTTTTCCAGTAATTCTTTTTTTAGATGGACATAAAAGCCACACAACACTTCAGCTTACTCAACTTTGTCAAAATCTTGGTATAATACTTATAGCTCTATACCCTAACGCGACACGGATTTTGCAACCAGCAGACGTAGCGGCATTTCGTCCAATAAAAGTAATGTGGCGTAAAGCAGTCCTAGAATGGCGAACAGATAACTTAACAAAATCTTTACTAAAAACAGATGTTGCTCCTATACTGGAGAAGCTTTTACCCAAATTAAATAAAACGACTTTGAAGAACGGCTTTGAAGCTTGTGGTTTATGCCCATTTAATTCAGATCAAGTGGACTACACAAAATGTTTAATGCCCTATAAACCAGTCCAAGAAATTTTGGATGACAACTGTTCTACAAGTCTTAACTATCAGAAATTCGAAGAAATAGTTGGACCACAGTTAATCAGAAAGATGAAAAATCAGGTGGTAGGTAAATCAAGAGAAGCTAAAAAGCTTCACGATTTGTATAAATATCTCGTACCAAAAATGTCAACACATGAGTCATCGTCACAAATCATAGAAACAACTTCTAAGGAACTAATGCAATACAAGGACAGGAGCAATTTAAATGAACAAAACAACGATGGTTCAGAAGATTTCACCACAATGGCAGCCCTCAATGAATTAACGACAATGCCAACAGACGTAGAACTTTTGCTAAATGAACCAGAACTGTCAACGCATGAACCTCAATCCAAAGACACTGGCACTTCTAAAACAAACACGATGATTGATGATTATTCAGGAACCTCAGGACACCTAAAACCTCTGAACGTTGAACTTCAGCATCAGGGGGTTGAGGAATTATCTTTGGCATCCTGTATAAATCTTACATCGACAAACGATCCAATACCAGAAGCTGTACAAATGGTTGAGGTTATTTCTGAGTGTGAAAAAGAAAACCAAACACCAATATACGTAATACCTATTCCATCCACTAGTCGTCAAAGTTTAGAGCTGATTGGAGAAAAATGGGTACTAGTGGATGACATGCCAACCGAAGTCCCTTCAAAGAGTCCAATAAAGAAACAAAATATAAAAGATTTTTTAAAGTTACCAAAGACTCCAATTAAAACACAAAAAGCTGGTATAGAACGTCGCTCTTTTGTTTTAACGAGTAAAGATTGGGAAGCTGTAGAACTAGAAAAACAACAAAAAAAGATGAAAGAGATACAAGAAAAGGAGAACAAACGAATAGCAAGACTAGAAAAAGCCAAAGAGAAACGCTTACTCAAGGAAACAAAACAAGCTGAAACTATAAATAAAAAGAACAAAGCTAAAAATTTAAATTTAATTAAGAAAAGTAAGCCAAATTCTGATAGTATCAAATCAAAAATTGTTATTCAATCAAATGTTTTAATTAAGCCTGCAAATAGAATCTCAAGTGATATTAAAGAAAAAAGAGAATATACAAAAGAAATTAAAAAAGGACCTATGAACGAAGTTAAACCTGCAGATATTACTGCCCTGAAGGAAATAAAAAACAGGCCAATTTTAGATGCAGTTGAAGCTGCAAATGAAAGACTCTTTAAAGAATCGGAACAAGTACAGATGGTAAAAAAAGAATTAAAGAAAGGACCAACTTTAGATGAACTTAAACCTCCGAACATAACTTTCCGAGATTCAAGGGAAACCGGAAAAGATAAGAAGATAAAAATTAAAGTAAATAGATTGAGACCAATGACAGATGAAGAATTGTTAAAAATGTTGGAAGATGATTAG

Protein

MPKVTDGKKYTKAYTEEDIEKALQAIKNGMGKKTAANKFNIPRATLQFRLSNQFVKSRPGPDTVLSSAEEQEIVKWIIAACRKGFPRRKEDVIKSVKLYLDEHPRPNSFIDNTPGEGWYKLFLKRHPELSIRTSEAVTSASSKLSEKQIRNWFTQVEEYLKENDLFHILSDPSRVYNGDETNFILCPKNTKVIALKGTKHVYEVDHAQAKSCVTVMFTFSADGVTTPPMIIYPLKRMRPEIQKSVPSEWGIGLSDNGWMKAELFIQYIQNVLHPALMKMNITFPVILFLDGHKSHTTLQLTQLCQNLGIILIALYPNATRILQPADVAAFRPIKVMWRKAVLEWRTDNLTKSLLKTDVAPILEKLLPKLNKTTLKNGFEACGLCPFNSDQVDYTKCLMPYKPVQEILDDNCSTSLNYQKFEEIVGPQLIRKMKNQVVGKSREAKKLHDLYKYLVPKMSTHESSSQIIETTSKELMQYKDRSNLNEQNNDGSEDFTTMAALNELTTMPTDVELLLNEPELSTHEPQSKDTGTSKTNTMIDDYSGTSGHLKPLNVELQHQGVEELSLASCINLTSTNDPIPEAVQMVEVISECEKENQTPIYVIPIPSTSRQSLELIGEKWVLVDDMPTEVPSKSPIKKQNIKDFLKLPKTPIKTQKAGIERRSFVLTSKDWEAVELEKQQKKMKEIQEKENKRIARLEKAKEKRLLKETKQAETINKKNKAKNLNLIKKSKPNSDSIKSKIVIQSNVLIKPANRISSDIKEKREYTKEIKKGPMNEVKPADITALKEIKNRPILDAVEAANERLFKESEQVQMVKKELKKGPTLDELKPPNITFRDSRETGKDKKIKIKVNRLRPMTDEELLKMLEDD

Uniprot

H9JU07

Pubmed

19121390

EMBL

BABH01003862

Proteomes

UP000005204

PRIDE

H9JU07

Pfam

PF03184 DDE_1 + More
PF05225 HTH_psq

Interpro

IPR004875   DDE_SF_endonuclease_dom        + More
IPR006600   HTH_CenpB_DNA-bd_dom
IPR009057   Homeobox-like_sf
IPR007889   HTH_Psq

SUPFAM

SSF46689 SSF46689

ProteinModelPortal

H9JU07

KEGG

105842057 no KO assigned | (RefSeq) uncharacterized LOC105842057

GO

GO:0003677 GO:0003676 GO:0006096 GO:0050113 GO:0016740 GO:0006108 GO:0030060 GO:0016615 GO:0000049 GO:0016876

Length:

867

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.24782

Exp number, first 60 AAs:

0

Total prob of N-in:

0.01071

outside

1 - 867

Pi

261.164593

Theta

201.482251

Tajima's D

1.090883

CLR

100.991823

CSRT

0.684665766711664

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics

Multiple alignment of Orthologues

Gene Tree