Gene

KWMTBOMO09552

Annotation

PREDICTED:_uncharacterized_protein_K02A2.6-like_[Papilio_machaon]

Location

Bomo_Chr16(-):4075078-4076355      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 2.608

CDS

ATGCCGATTGGGAAAGTTGAAAGTTTTGATATGGGATCCCAAAATTGGGACACATACATTCGTCGTGTAAAACAATTTATGGAACTCAACGACATTGAACAGAGACTTCACGTTGCAACGCTCGTGACCTTAGTTGGGTCTGAGTGCTATGACTTAATGTGTGACTTGTGTGCTCCGGACTTACCAGAAGAAAAGGATTTCGACATACTCGTAAAATTAGTCAAAGATCATCTAGAACCTGAAAGATCGGAAATAGCAGAACGTCATATCTTCAGGCAAAGAAAGCAGCAAAATAACGAAAGCATTCGTTCCTACCTACAAAGTTTGAAACATTTGGCTAAAACTTGCAATTTCGGCATCACACTAGAAATTAATCTACGCGATCAATTCGTATCAGGATTATATAGTGAGGAGATGCGGTCAAGGCTGTTTGCTGAAAAAGATATAGATTACAAGCGCGCTGTTGAGTTAGCATCAGCACTGGAAGCAGCGGATCGACATGCGATGGCGGCTGGGGGCACTGGGGGCAGCTCACAGGCTGCGTCCGAGAGCGATGGCATGCATCGGGTCGGCGGAGCGCGCGCGGAGGCTCGCTGCGCCTGCAGACGCTGCGGCAAGCTGGGCCATGCGGAGGGTCGGTGTCGGTACAAGCACTACACCTGTGACTCATGTGGCGAGAAGGGACATCTAAAATCAATGTGTCGGAACCGTAAAGGTAACCAAAAGATTGAAAAAACCCGAGTTCATATACAGGCGATGTAA

Protein

MPIGKVESFDMGSQNWDTYIRRVKQFMELNDIEQRLHVATLVTLVGSECYDLMCDLCAPDLPEEKDFDILVKLVKDHLEPERSEIAERHIFRQRKQQNNESIRSYLQSLKHLAKTCNFGITLEINLRDQFVSGLYSEEMRSRLFAEKDIDYKRAVELASALEAADRHAMAAGGTGGSSQAASESDGMHRVGGARAEARCACRRCGKLGHAEGRCRYKHYTCDSCGEKGHLKSMCRNRKGNQKIEKTRVHIQAM

Similarity

Belongs to the complex I LYR family.

Uniprot

A0A2A4IZ34   A0A1E1WAI1   A0A2H1V4Y6   A0A2A4K2Y4   A0A0L7K286   A0A0L7K3M9   + More
A0A0L7LC80   A0A0L7KTF6   A0A0L7L4A5   A0A0L7LEA9   A0A3S2PB62   A0A1Y1LPV1   A0A0L7L8L8   A0A1Y1K5W2   A0A1Y1K4M7   A0A0L7L085   A0A1B6DD07   A0A0L7KNU8   A0A1B6CPB9   A0A2B4RXD0   A0A2B4RTJ4   A0A3B1JY20   A0A1B6CK52   A0A1B6E6W0   A0A2B4R781   L7MMK9   A0A3B3H285   A0A2S2PAH0   A0A3S3NQ29   A0A3P8NHI5   A0A3P8QD94   A0A1Z5KXP3   A0A3B3XP10   A0A3P8Q506   A0A452HWT6   A0A3P8NG55   A0A3B3T0U0   A0A1X7T4D7   A0A1A8C840   A0A3B3SNE8   A0A1A8FCH6   A0A1A7YSF0   A0A0V1KLH7   A0A2B4RPN6   A0A1Y1MAK2   A0A0V0UKI3   A0A0V0UIV1   A0A0V0VGS7   A0A1X7SDS3   A0A3Q1EQC9   A0A131XQT5   A0A0V1CLZ1   A0A0V0Z7T7   A0A2B4RXH4   A0A443RUP6   A0A085N6E6   A0A1W7R4S2   K7EWQ6   A0A2I4C6V0   A0A0V0USX8   A0A1B6MJ81   A0A0V1KNI7  

Pubmed

26227816    28004739    25329095    25576852    17554307    28528879    + More
28562605    29240929    24929829    17381049   

EMBL

NWSH01004348    PCG65197.1    GDQN01007099    JAT83955.1    ODYU01000701    SOQ35910.1    + More
NWSH01000218    PCG78288.1    JTDY01015222    KOB51965.1    JTDY01012655    KOB52243.1    JTDY01001749    KOB72999.1    JTDY01006045    KOB66341.1    JTDY01003118    KOB70119.1    JTDY01001428    KOB73878.1    RSAL01000130    RVE46453.1    GEZM01051399    JAV74971.1    JTDY01002326    KOB71659.1    GEZM01096178    JAV55085.1    GEZM01096180    JAV55080.1    JTDY01004038    KOB68679.1    GEDC01013717    JAS23581.1    JTDY01008052    KOB64775.1    GEDC01021971    JAS15327.1    LSMT01000299    PFX20902.1    LSMT01000298    PFX20931.1    GEDC01023506    GEDC01023205    JAS13792.1    JAS14093.1    GEDC01007675    GEDC01003661    JAS29623.1    JAS33637.1    LSMT01001234    PFX12679.1    GACK01000385    JAA64649.1    GGMR01013781    MBY26400.1    NCKU01014527    RWR99571.1    GFJQ02007084    JAV99885.1    HADZ01011823    HAEA01016148    SBP75764.1    HAEB01010230    SBQ56757.1    HADX01010638    SBP32870.1    JYDW01000462    KRZ48138.1    LSMT01000354    PFX19571.1    GEZM01036245    JAV82862.1    JYDK01000935    KRX51560.1    JYDK01000986    KRX51372.1    JYDN01000036    KRX62729.1    GEFM01006397    JAP69399.1    JYDI01000154    KRY50253.1    JYDQ01000335    KRY08440.1    LSMT01000297    PFX20955.1    NCKV01030579    RWS19072.1    KL367545    KFD65042.1    GEHC01001477    JAV46168.1    AGCU01195578    JYDN01000181    KRX54109.1    GEBQ01003960    JAT36017.1    JYDW01000348    KRZ48953.1   

Proteomes

UP000218220    UP000037510    UP000283053    UP000225706    UP000018467    UP000001038    + More
UP000285301    UP000265100    UP000261480    UP000291020    UP000261540    UP000007879    UP000054721    UP000054673    UP000054681    UP000257200    UP000054653    UP000054783    UP000288716    UP000007267    UP000192220   

Pfam

PF03732   Retrotrans_gag        + More
PF00078   RVT_1
PF17919   RT_RNaseH_2
PF17921   Integrase_H2C2
PF00665   rve
PF00098   zf-CCHC
PF17917   RT_RNaseH
PF05347   Complex1_LYR
PF00929   RNase_T
PF12796   Ank_2

Interpro

IPR036875   Znf_CCHC_sf        + More
IPR001878   Znf_CCHC       
IPR005162   Retrotrans_gag_dom       
IPR021109   Peptidase_aspartic_dom_sf       
IPR001584   Integrase_cat-core       
IPR041577   RT_RNaseH_2       
IPR012337   RNaseH-like_sf       
IPR041588   Integrase_H2C2       
IPR036397   RNaseH_sf       
IPR000477   RT_dom       
IPR041373   RT_RNaseH       
IPR008011   Complex1_LYR       
IPR001995   Peptidase_A2_cat       
IPR001969   Aspartic_peptidase_AS       
IPR002110   Ankyrin_rpt       
IPR013520   Exonuclease_RNaseT/DNA_pol3       
IPR020683   Ankyrin_rpt-contain_dom       
IPR036770   Ankyrin_rpt-contain_sf       

SUPFAM

SSF57756   SSF57756        + More
SSF50630   SSF50630       
SSF53098   SSF53098       
SSF48403   SSF48403       

Gene 3D

2.40.70.10     3.30.420.10     1.25.40.20    

CDD

cd00204  ANK

ProteinModelPortal

A0A2A4IZ34   A0A1E1WAI1   A0A2H1V4Y6   A0A2A4K2Y4   A0A0L7K286   A0A0L7K3M9   + More
A0A0L7LC80   A0A0L7KTF6   A0A0L7L4A5   A0A0L7LEA9   A0A3S2PB62   A0A1Y1LPV1   A0A0L7L8L8   A0A1Y1K5W2   A0A1Y1K4M7   A0A0L7L085   A0A1B6DD07   A0A0L7KNU8   A0A1B6CPB9   A0A2B4RXD0   A0A2B4RTJ4   A0A3B1JY20   A0A1B6CK52   A0A1B6E6W0   A0A2B4R781   L7MMK9   A0A3B3H285   A0A2S2PAH0   A0A3S3NQ29   A0A3P8NHI5   A0A3P8QD94   A0A1Z5KXP3   A0A3B3XP10   A0A3P8Q506   A0A452HWT6   A0A3P8NG55   A0A3B3T0U0   A0A1X7T4D7   A0A1A8C840   A0A3B3SNE8   A0A1A8FCH6   A0A1A7YSF0   A0A0V1KLH7   A0A2B4RPN6   A0A1Y1MAK2   A0A0V0UKI3   A0A0V0UIV1   A0A0V0VGS7   A0A1X7SDS3   A0A3Q1EQC9   A0A131XQT5   A0A0V1CLZ1   A0A0V0Z7T7   A0A2B4RXH4   A0A443RUP6   A0A085N6E6   A0A1W7R4S2   K7EWQ6   A0A2I4C6V0   A0A0V0USX8   A0A1B6MJ81   A0A0V1KNI7  

KEGG

101742881    K12614 ATP-dependent RNA helicase DDX6/DHH1 [EC:3.6.4.13] | (RefSeq) putative ATP-dependent RNA heli

PATHWAY

03018    RNA degradation - Bombyx mori (domestic silkworm)

GO

GO:0008270   GO:0003676   GO:0015074   GO:0004190   GO:0016021   GO:0050113   GO:0016740   GO:0006108   GO:0030060   GO:0016615   GO:0000049   GO:0016876  

Length:

253

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.0002

Exp number, first 60 AAs:

0.0002

Total prob of N-in:

0.02113

outside

1  -  253

 

 

Pi

478.044223

Theta

201.038963

Tajima's D

4.314188

CLR

0

CSRT

0.999650017499125

Interpretation

Uncertain