SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO09541
Pre Gene Modal
BGIBMGA013026
Annotation
PREDICTED:_uncharacterized_protein_LOC105842064_[Bombyx_mori]
Location in the cell
Extracellular   Reliability : 1.161
 

Sequence

CDS
ATGAATCTTATACCGATTTTATGGTGCTGGCTGGTGGTAATAGCATTGTCATGGGGAAGAGCTAGTGGTCACGGCCGCCTCATAGAACCTCCCTCCCGAGCGTCGGCATGGAGGTTCGGATTTGACACGCCACATAATTACAACGATCACGAACTCTTCTGCGGTGGATTCTCAAGACAATGGAATAAAAACGACGGGAAATGCGGCGTTTGCGGAGACCCATGGGATGCTAGTACACCTCGAGCTCACGAGTTGGGAGGAAGATTCGGAAAAGGTATAATAGTACGTAAATATGCACCCAAATCAACAATAACGATAAAAGTAGAATTAACGGCCAGTCACAATGGATTCTTTGAGTTCAGAGTTTGCGAAGAACCAAAATCTACAACGCAAGAATGCTTAGACAAATACGTTCTCAAAATGGACGGAAAAGACAGCACTAAATTCTATCCGAGAGACGGAAATAAAGTTTACGAAATGAAGTATCAGCTGCCTGAAGGACTGGAATGCTCTCATTGCGTAATGCAATGGAGGTACATTGCCGGAAATAACTGGGGTAAGTGCGAAAACGGAACAGAATCGGTCGGGTGTGGACCACAAGAGGAGTTCAGGGCTTGTGCGGACATAGCGATCGGCGAGCGCTTTAGTACAACCACCAGGAAGCCCAGACCGACCTACGTGCCTCCTGGAAGACGGCCGACAGTGCCGACGCCGGAGGAGTCCAGCGGAACCGCCTGGTACGGTGCTGTCATCGCGATCACGACACTGCTCATTTCGATTGCAGTGCTCGCGGCTATTTACCTGTATTACTACAGAGGCGGAATGAGAATTAAGAATCTGTTGAAGTCAAAGTCGCTTCCACCTGCACCCCTGCCTCCTCCGAGACACAAACGCGCCTCGTTGTCTAGAGAAACGCCTCCGGATCTAGTGCCGGCTAAAATATCGACCGTGGAATCTGGTTTTGAAACAGTAGACCTAAGAGCTAAATAA
Protein
MNLIPILWCWLVVIALSWGRASGHGRLIEPPSRASAWRFGFDTPHNYNDHELFCGGFSRQWNKNDGKCGVCGDPWDASTPRAHELGGRFGKGIIVRKYAPKSTITIKVELTASHNGFFEFRVCEEPKSTTQECLDKYVLKMDGKDSTKFYPRDGNKVYEMKYQLPEGLECSHCVMQWRYIAGNNWGKCENGTESVGCGPQEEFRACADIAIGERFSTTTRKPRPTYVPPGRRPTVPTPEESSGTAWYGAVIAITTLLISIAVLAAIYLYYYRGGMRIKNLLKSKSLPPAPLPPPRHKRASLSRETPPDLVPAKISTVESGFETVDLRAK

Summary

Pfam
PF03067   LPMO_10        + More
PF16740   SKA2
Interpro
IPR004302   Cellulose/chitin-bd_N        + More
IPR002321   Cyt_c_II       
IPR000104   Antifreeze_1       
IPR042091   Ska2_N       
PDB
5MSZ     E-value=1.57492e-46,     Score=468

Ontologies

Topology

SignalP
Position:   1 - 23,         Likelihood:  0.994323
 
 
Length:
329
Number of predicted TMHs:
1
Exp number of AAs in TMHs:
27.48888
Exp number, first 60 AAs:
4.42002
Total prob of N-in:
0.21338
outside
1  -  248
TMhelix
249  -  271
inside
272  -  329
 
 

Population Genetic Test Statistics

Pi
182.692904
Theta
149.688833
Tajima's D
0.57777
CLR
0.05727
CSRT
0.533373331333433
Interpretation
Uncertain
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