Gene

KWMTBOMO09537  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA013029

Annotation

Mitochondrial_ribosomal_protein_L17_[Operophtera_brumata]

Location

Bomo_Chr16(-):3479962-3481479      View in EpiBrowser

Location in the cell

Cytoplasmic   Reliability : 2.235 Mitochondrial   Reliability : 1.844

CDS

ATGAATTTCATTAGGACAGTACCATTCGTTCCACAAATGACAAGATTGAGTTCGACAGCCAATGTTGAATTCGTAAATCGAAATCCAAGAAATTTAGAACGGATGCGAATAGCCAGAAAACCGGATGGATATCACTTAGAGAAACCTGGAAGGAAATATTGGCACAAATTAGTTTTGACACCGGGAAACCGTTCAATAATAGCCAAAGTAATTCATTTTCTCAATGGCCCTGTTGTGGAGGTGAAGACTTCAGAGTGGGCATTACAGAAACAATTATACAGCCCCACAGATACCTGTGCGTACATCAGCCTCGGGAAAGTTTTGGCACAAAGATGCATAGAATTTGGAATTACTGAAATGTACTGTGATCTAGAGCCTCAACAGGGCGGGAAAGCTGAGAAATTCTTAGAGGAAGTGGTGAAGGGAGGAATTACACTACAAGAGCCAGAAGTATATAAAAAACCAAACCCTTGGGATCAGTTCAGGCCTGAAAAGCCATGGGAAGTTCATGATGAATAA

Protein

MNFIRTVPFVPQMTRLSSTANVEFVNRNPRNLERMRIARKPDGYHLEKPGRKYWHKLVLTPGNRSIIAKVIHFLNGPVVEVKTSEWALQKQLYSPTDTCAYISLGKVLAQRCIEFGITEMYCDLEPQQGGKAEKFLEEVVKGGITLQEPEVYKKPNPWDQFRPEKPWEVHDE

Uniprot

H9JU17   A0A0L7KVK6   A0A2H1VF80   A0A1E1WDC3   E3UUW0   A0A437BFJ7   + More
A0A2W1BJM1   A0A0N1PHT8   A0A2A4IZG4   A0A194Q6T1   A0A212FMT4   A0A195BRC1   A0A195ERD6   A0A151X4V2   A0A1Q3FF63   A0A158NDZ9   A0A195C6W4   Q17PZ3   A0A195D9C7   B0W0R0   A0A023EGQ5   A0A1S4EV46   E2AX66   A0A0A1WNG8   V5GRZ1   A0A182H3D9   A0A182K961   A0A034WKY9   A0A1I8PI96   F4X1T5   A0A0M4EEB6   A0A139WGG4   A0A0K8W2L9   W8BTV3   A0A0K8TMY8   A0A2M3ZB05   A0A2M3ZB45   B4MFN2   A0A2M4C1W4   A0A182QPJ4   A0A1I8N2Y5   A0A182SGL7   A0A2M4C1B9   B4J8G6   A0A2M4C1T0   B4P4Z1   A0A182NN95   Q6XHS3   A0A2M4AVH7   B4KRR4   Q28YX3   B4GIK0   A0A3B0JGV7   B4MPE2   A0A182LTU7   A0A182S0P1   A0A182WAU9   A0A2Y9D301   Q9XY36   A0A2S2QL45   B4QDG7   A0A182HI98   A0A1W4VQG0   Q5TPQ3   A0A1B0BEB6   Q7JVK1   B3NRV7   T1EAQ0   A0A1A9Y7P8   B4HPP0   A0A182XPS8   C4WWP0   J3JWG2   A0A2S2PIF5   A0A2M4CU41   A0A1B6GB44   B3MG16   A0A067QY34   A0A0L0BP68   A0A1Y1JR83   A0A3F2YZL3   A0A2H8TLE9   A0A026W0P1   A0A2Y9D1E9   A0A0L7R133   E2BFD8   A0A1S3CV27   A0A2R7WFG7   A0A1B6MEG2   U5ERC5   A0A232ER20   A0A1W4XK86   A0A0A9X8W3   A0A310SDY4   A0A088ANJ6   A0A1J1IP57   A0A154NZM8   A0A2A3EGE7   A0A0M8ZV95   V9ILL8  

Pubmed

19121390    26227816    28756777    26354079    22118469    21347285    + More
17510324    24945155    20798317    25830018    26483478    25348373    21719571    18362917    19820115    24495485    26369729    17994087    25315136    17550304    14525923    15632085    11102369    22936249    12364791    14747013    17210077    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    22516182    23537049    24845553    26108605    28004739    24508170    30249741    20966253    28648823    25401762    26823975   

EMBL

BABH01003940    JTDY01005199    KOB67263.1    ODYU01002046    SOQ39062.1    GDQN01006473    + More
GDQN01006193    JAT84581.1    JAT84861.1    HM590400    ADP21469.1    RSAL01000071    RVE49111.1    KZ150081    PZC73864.1    KQ460651    KPJ12983.1    NWSH01005013    PCG64493.1    KQ459582    KPI99100.1    AGBW02007651    OWR55037.1    KQ976424    KYM88506.1    KQ981993    KYN30820.1    KQ982548    KYQ55309.1    GFDL01008861    JAV26184.1    ADTU01013080    KQ978251    KYM95908.1    CH477188    EAT48801.1    KQ981153    KYN09004.1    DS231818    EDS41362.1    GAPW01005085    JAC08513.1    GL443520    EFN61949.1    GBXI01014237    JAD00055.1    GALX01005473    JAB62993.1    JXUM01107202    KQ565122    KXJ71317.1    GAKP01004147    JAC54805.1    GL888551    EGI59592.1    CP012524    ALC41488.1    KQ971345    KYB27088.1    GDHF01007003    JAI45311.1    GAMC01014011    JAB92544.1    GDAI01002102    JAI15501.1    GGFM01004942    MBW25693.1    GGFM01004944    MBW25695.1    CH940667    EDW57203.1    GGFJ01010123    MBW59264.1    AXCN02001903    GGFJ01009961    MBW59102.1    CH916367    EDW02325.1    GGFJ01010122    MBW59263.1    CM000158    EDW90712.1    AY232110    AAR10133.1    GGFK01011472    MBW44793.1    CH933808    EDW08334.1    CM000071    EAL25842.2    CH479183    EDW36320.1    OUUW01000001    SPP74600.1    CH963849    EDW73981.1    AXCM01012325    AF017783    AAD28638.1    GGMS01008699    MBY77902.1    CM000362    CM002911    EDX06832.1    KMY93334.1    APCN01008150    AAAB01008968    EAL39441.2    JXJN01012832    AE013599    AY118885    AAF58460.1    AAM50745.1    CH954179    EDV56259.1    GAMD01000217    JAB01374.1    CH480816    EDW47624.1    ABLF02036630    ABLF02036643    AK342181    BAH72310.1    APGK01055160    BT127580    KB741261    KB631024    KB631053    AEE62542.1    ENN71560.1    ERL84018.1    ERL84048.1    GGMR01016578    MBY29197.1    GGFL01004676    MBW68854.1    GECZ01010111    JAS59658.1    CH902619    EDV36711.1    KK853217    KDR09758.1    JRES01001578    KNC21857.1    GEZM01102920    JAV51719.1    GFXV01003054    MBW14859.1    KK107503    QOIP01000006    EZA49632.1    RLU21727.1    KQ414668    KOC64558.1    GL448009    EFN85598.1    KK854736    PTY18288.1    GEBQ01005673    JAT34304.1    GANO01003792    JAB56079.1    NNAY01002670    OXU20813.1    GBHO01028351    GBRD01016606    GDHC01021010    JAG15253.1    JAG49220.1    JAP97618.1    KQ772169    OAD52475.1    CVRI01000054    CRL00862.1    KQ434782    KZC04544.1    KZ288254    PBC30778.1    KQ435833    KOX71667.1    JR050901    AEY61381.1   

Proteomes

UP000005204    UP000037510    UP000283053    UP000053240    UP000218220    UP000053268    + More
UP000007151    UP000078540    UP000078541    UP000075809    UP000005205    UP000078542    UP000008820    UP000078492    UP000002320    UP000000311    UP000069940    UP000249989    UP000075881    UP000095300    UP000007755    UP000092553    UP000007266    UP000008792    UP000075886    UP000095301    UP000075901    UP000001070    UP000002282    UP000075884    UP000009192    UP000001819    UP000008744    UP000268350    UP000007798    UP000075883    UP000075900    UP000075920    UP000075903    UP000000304    UP000075840    UP000192221    UP000007062    UP000092460    UP000000803    UP000008711    UP000092443    UP000001292    UP000076407    UP000007819    UP000019118    UP000030742    UP000007801    UP000027135    UP000037069    UP000075902    UP000053097    UP000279307    UP000075882    UP000053825    UP000008237    UP000079169    UP000215335    UP000192223    UP000005203    UP000183832    UP000076502    UP000242457    UP000053105   

PRIDE

H9JU17    Q9XY36    Q7JVK1   

Pfam

PF00861   Ribosomal_L18p

Interpro

IPR036967   Ribosomal_S11_sf        + More
IPR005484   Ribosomal_L18       

Gene 3D

3.30.420.80    

ProteinModelPortal

H9JU17   A0A0L7KVK6   A0A2H1VF80   A0A1E1WDC3   E3UUW0   A0A437BFJ7   + More
A0A2W1BJM1   A0A0N1PHT8   A0A2A4IZG4   A0A194Q6T1   A0A212FMT4   A0A195BRC1   A0A195ERD6   A0A151X4V2   A0A1Q3FF63   A0A158NDZ9   A0A195C6W4   Q17PZ3   A0A195D9C7   B0W0R0   A0A023EGQ5   A0A1S4EV46   E2AX66   A0A0A1WNG8   V5GRZ1   A0A182H3D9   A0A182K961   A0A034WKY9   A0A1I8PI96   F4X1T5   A0A0M4EEB6   A0A139WGG4   A0A0K8W2L9   W8BTV3   A0A0K8TMY8   A0A2M3ZB05   A0A2M3ZB45   B4MFN2   A0A2M4C1W4   A0A182QPJ4   A0A1I8N2Y5   A0A182SGL7   A0A2M4C1B9   B4J8G6   A0A2M4C1T0   B4P4Z1   A0A182NN95   Q6XHS3   A0A2M4AVH7   B4KRR4   Q28YX3   B4GIK0   A0A3B0JGV7   B4MPE2   A0A182LTU7   A0A182S0P1   A0A182WAU9   A0A2Y9D301   Q9XY36   A0A2S2QL45   B4QDG7   A0A182HI98   A0A1W4VQG0   Q5TPQ3   A0A1B0BEB6   Q7JVK1   B3NRV7   T1EAQ0   A0A1A9Y7P8   B4HPP0   A0A182XPS8   C4WWP0   J3JWG2   A0A2S2PIF5   A0A2M4CU41   A0A1B6GB44   B3MG16   A0A067QY34   A0A0L0BP68   A0A1Y1JR83   A0A3F2YZL3   A0A2H8TLE9   A0A026W0P1   A0A2Y9D1E9   A0A0L7R133   E2BFD8   A0A1S3CV27   A0A2R7WFG7   A0A1B6MEG2   U5ERC5   A0A232ER20   A0A1W4XK86   A0A0A9X8W3   A0A310SDY4   A0A088ANJ6   A0A1J1IP57   A0A154NZM8   A0A2A3EGE7   A0A0M8ZV95   V9ILL8  

PDB

6NU3     E-value=1.35476e-19,     Score=232

KEGG

101745044    K02881 large subunit ribosomal protein L18 | (RefSeq) 39S ribosomal protein L18, mitochondrial

PATHWAY

03010    Ribosome - Bombyx mori (domestic silkworm)

GO

GO:0005840   GO:0003735   GO:0006412   GO:0005739   GO:0008097   GO:0032543   GO:0005762   GO:0016021  

PANTHER

PTHR12899  

Length:

172

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.0016

Exp number, first 60 AAs:

0.00057

Total prob of N-in:

0.06360

outside

1  -  172

 

 

Pi

177.270524

Theta

143.012801

Tajima's D

0.752821

CLR

0.709358

CSRT

0.590570471476426

Interpretation

Uncertain