SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO09535  Validated by peptides from experiments
Pre Gene Modal
BGIBMGA013032
Annotation
PREDICTED:_uncharacterized_protein_LOC101742265_isoform_X1_[Bombyx_mori]
Location in the cell
Nuclear   Reliability : 3.247
 

Sequence

CDS
ATGGACGTCTTTAAGGTAGAGGAGGTTATGCAGCAGAAGGCGCCTGTGGTGCCTAGTAACGTGAAACTACATAATCAACCAAGCAGTTCTCTTTCTCCTGACGCGAGGAGCAAGAAATTCTCGGCGAATTTTTTCAAAGCAACTTTTAGCTCACGAAGCAAGGCGGTCCAGCCCGCCACTTCAACGCAGTCGATAGACGAAACTAGCAAGATAGGTAGCGCGGAGACCAAGCCTATTACTAGAAATAGGCCTAGGACAGCAACAACGCAAGAGTCTTCATCTAAATTAAAATTAAAACGAAGCCTTGGCGTGGAACGCCTGTCCTCCGCGAAGCCTTCCATCAAACGACTGGACAAACCCTTAGAGCCCGAACGACCCTTGAGGAACAAACCGACAACACCGGACCCCGGTGGGCCGAAGCCGACAAGAGATGCAAACAAAAGTGAACCTAAAGTCAGGAATGTCGTTTTGCAAATCGTGAAAAAGTCCCACGCACCTCTGAAACCGCCTTCGCCGCCAGTTGATACCGTTTTGCCACCGACGCTGAAGCCGAAGGTTCCAGAAAAGAGTTTGAAGATAACGAAGAACATTAACAACAATGATGTTTGGACTAGTGCCGATGAAAAAAGAAGCTTCCGAAAGAGAATCACTTCATTACCCATAAGAGGACCTAGTCAGGGGAAACAGGAGGCCACGCTGAAAGGAGCTCCTTCAGTGTCCAGCCTCGATTCCAAGCACCACAAAGTAGCGCCAGCAAGAGACAAAGCATTAAAGCTCTTCGGCTCGAAGGAGAAACTGCACAAGGCACACAAAAAGAAGGATCTCGGGAATAATAATGCGGTTCTAGAGGACCCCGAGCTTAGAGAGAGCTTGGAATACGAAGATGGACAGGTCGGAAGGGATTACGGAAGCGCCGAGGAGCTGGGTGGATCGGTAGACGAACGAGGCTCCCAGGAGTACGTTAGCCTGCCGGTCACTTTAAATGCTGACCACATGCCGGGCTTTCCGGACGTGGAGCTCATGCCTGCAGCTCCATCAGAGGCATCATTAATATCAGGAGCCCGTGAGATAGAGACACTGAGGAGGGAACTGGAAATAAGCGCAATGGAACGAGCACAGCTACAAGCGAGGGTCGACGAACTCCTCGAGAAGGCCACCGAGGCTGATAGGCTGAGAGCTGAACTGGATAAATTGAAGAGCGTGGAAGCGGAACGCGAGGCGGCGCTAGAGCGTCTCGCCGACGAGAATGGGGCGTTGCGCGCGCGGCTGCGTGGTGTCGCGCACTCGCCGCTCTCCGACAGCGAGAAGCGGCAGCTGCTGCTCGCGCCAGCACCCCGCCGCATGCACTCCTCGGCGCCGGCCTCCATAGCGCTCGCCCACAATGGCGAAGGCGACAGCGGAGAGGCGAGCACCCCGGAGTGGGACAAGCACTCGTCCTCCTCGCTCAGCGAGGTGTCGGTCGCGTGTCTGCAGGACCGCATCCTGCAGATGGAGGAACACCACTATAGCACAAGCGAAGAGCTCCAAGCGACGTTGGCGGAACTTGCAGACCTGCAGTCGCAACTGGCTGACGCTCACGCGGACAACGAGCGTCTGGCTGACGAGAAGCAGGTCCTGCTGGAGTCCCTCTGTCGGCAGACTGAGAAACTAGAGGACAGCAGGACGAAGGTGGACACACTACAAGAGCTATTGTTGCGTGAGGGCATTGAACCCGTGAACCTGGTCCCCGGGGACACGGATCAACAGCTGTTCGCCATGTTGAAGATGTCGCAGGAGGAAAGAAAGCATCTGTTAACCAAACAGGAACAGCTGGAAGAGGAGTTAAGTCAACTGAAAACGAGTTTAGAAGAGAAAACCAAAGAAAATGAAGCTCTCAGTGAGAGGATTAGGTCGCTGGAGAGCTCGCTGGAGTGCTCGCGCGCCGAGAGCGAGCTGGAGGCGCAGGCGGCGCGGGACCTGGCCGCCGCCCGCCAGCACCAGGTCGCCACGCTCTCCGACCTGCTCGACGCCGCTAAAGCCAAGGTCAGGACAGTGACCATAATCTCTGTACTTGTGAAACTTCTTTAG
Protein
MDVFKVEEVMQQKAPVVPSNVKLHNQPSSSLSPDARSKKFSANFFKATFSSRSKAVQPATSTQSIDETSKIGSAETKPITRNRPRTATTQESSSKLKLKRSLGVERLSSAKPSIKRLDKPLEPERPLRNKPTTPDPGGPKPTRDANKSEPKVRNVVLQIVKKSHAPLKPPSPPVDTVLPPTLKPKVPEKSLKITKNINNNDVWTSADEKRSFRKRITSLPIRGPSQGKQEATLKGAPSVSSLDSKHHKVAPARDKALKLFGSKEKLHKAHKKKDLGNNNAVLEDPELRESLEYEDGQVGRDYGSAEELGGSVDERGSQEYVSLPVTLNADHMPGFPDVELMPAAPSEASLISGAREIETLRRELEISAMERAQLQARVDELLEKATEADRLRAELDKLKSVEAEREAALERLADENGALRARLRGVAHSPLSDSEKRQLLLAPAPRRMHSSAPASIALAHNGEGDSGEASTPEWDKHSSSSLSEVSVACLQDRILQMEEHHYSTSEELQATLAELADLQSQLADAHADNERLADEKQVLLESLCRQTEKLEDSRTKVDTLQELLLREGIEPVNLVPGDTDQQLFAMLKMSQEERKHLLTKQEQLEEELSQLKTSLEEKTKENEALSERIRSLESSLECSRAESELEAQAARDLAAARQHQVATLSDLLDAAKAKVRTVTIISVLVKLL

Summary

Pfam
PF00307   CH
Interpro
IPR036872   CH_dom_sf        + More
IPR001715   CH-domain       
SUPFAM
SSF47576   SSF47576       
Gene 3D

Ontologies

GO

Topology

Length:
688
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0
Exp number, first 60 AAs:
0
Total prob of N-in:
0.00015
outside
1  -  688
 
 

Population Genetic Test Statistics

Pi
256.860024
Theta
185.742637
Tajima's D
0.954133
CLR
0.437827
CSRT
0.648267586620669
Interpretation
Uncertain
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