SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO09524
Annotation
Niemann-Pick_type_C2_protein_Npc2-t01_[Helicoverpa_armigera]
Location in the cell
Cytoplasmic   Reliability : 1.049 Extracellular   Reliability : 1.354
 

Sequence

CDS
ATGACAGTACTGGTTCGTTTATATTCAGTGACGTTTTTGTGTTTGTGGACAATTGTCGTAATCCAAGGGACTGATGTTGATAAATGCTCGAAGGGAAAAGGACCACTGCCCGCATCAGTGGAATTAGTTGGGTGCGAGAAACCAAGATGCAAGCTCCGTCGGGGTCAAATCGCTACTTTGAACCTAAAGTTCAACGCCCCTCACGCCATCCGACACATGCACACGAAGGCCTCAGCCAAAGCGTACTTGGCCCTGTTCTTTCCAGTGACTTACAAACTAGAACTCGGGGACATGGAGAAGACTTGCCAATTCCTCACTAACACAAAATGTCCTATACCGTCCGGTCAAGAAGTGCACTTTTCACTCGAGATCCTAATAGAAGATGACTTTCCTAAGAATCAACAATTGACAGTCGAGTTCATCATAGAAGACCAGGACAACAAACCTCTTATTTGTGCTGAACTACCAATTGTAATTGTATAG
Protein
MTVLVRLYSVTFLCLWTIVVIQGTDVDKCSKGKGPLPASVELVGCEKPRCKLRRGQIATLNLKFNAPHAIRHMHTKASAKAYLALFFPVTYKLELGDMEKTCQFLTNTKCPIPSGQEVHFSLEILIEDDFPKNQQLTVEFIIEDQDNKPLICAELPIVIV

Summary

EMBL
BABH01006222    BABH01006223    BABH01006224    GBRD01014275    GBRD01012803    JAG53023.1    + More
KZ149898    PZC78635.1    KJ439235    AHX25886.1    KZ150081    PZC73874.1    KQ459582    KPI99078.1    NWSH01001926    PCG69655.1    KPI99077.1    KQ460651    KPJ13001.1    ODYU01007802    SOQ50876.1    RSAL01000071    RVE49122.1    KPI99082.1    PZC73873.1    AGBW02008843    OWR52407.1    JTDY01002775    KOB70754.1    KPJ12995.1    NWSH01001867    PCG69851.1    GDQN01006112    JAT84942.1    GDQN01000238    JAT90816.1    AAAB01008807    EAA04248.1    APCN01000178    AJWK01006215    AXCM01000754    AXCN02000328    GFDF01005492    JAV08592.1    AJVK01018123    ATLV01010520    KE524585    KFB35565.1    APCN01000568    AXCM01011544    HQ015441    ADL40392.1    ATLV01014022    KE524928    KFB38302.1    AAAB01008859    EAA07750.6    AXCN02000326    UFQS01000108    UFQT01000108    SSW99732.1    SSX20112.1    GGFJ01010325    MBW59466.1    GAMD01001547    JAB00044.1    EAA07758.2    GFDF01005490    JAV08594.1    CH899803    EAT32473.1    ADMH02001864    ETN60795.1    GGFJ01010358    MBW59499.1    GAMD01002965    JAA98625.1    ODYU01000906    SOQ36371.1    GFDF01005491    JAV08593.1    AJWK01002002    AY752814    AAV84227.1    ADMH02001605    ETN61843.1    AJVK01028752    ADMH02001445    ETN62533.1    UFQS01001749    UFQS01001750    UFQT01001749    UFQT01001750    UFQT01001771    SSX12201.1    SSX12202.1    SSX31653.1    SSX31743.1    AY752812    AAV84225.1    NNAY01003399    OXU19475.1    ATLV01014021    KFB38300.1    OXU19473.1   
Pfam
PF02221   E1_DerP2_DerF2
Interpro
IPR014756   Ig_E-set        + More
IPR003172   ML_dom       
IPR039670   NPC2-like       
IPR033916   ML_Npc2-like       
SUPFAM
SSF81296   SSF81296       
PDB
5KWY     E-value=0.00165756,     Score=93

Ontologies

Topology

SignalP
Position:   1 - 23,         Likelihood:  0.961138
 
 
Length:
160
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
14.40531
Exp number, first 60 AAs:
14.22466
Total prob of N-in:
0.59396
POSSIBLE N-term signal
sequence
outside
1  -  160
 
 

Population Genetic Test Statistics

Pi
258.433276
Theta
205.153385
Tajima's D
0.168548
CLR
0.179126
CSRT
0.421328933553322
Interpretation
Uncertain
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