Gene

KWMTBOMO09522

Pre Gene Modal

BGIBMGA013042

Annotation

PREDICTED:_somatomedin-B_and_thrombospondin_type-1_domain-containing_protein_[Amyelois_transitella]

Location

Bomo_Chr16(-):3094222-3163776      View in EpiBrowser

Location in the cell

Extracellular   Reliability : 4.433

CDS

ATGCACCGCCATTTTCTTTGTCTAAGCTTGTTCATTTTCGCGGGCTATTGCGATGCGAACTATTGCCGGGACGCGAACCTGTGCTGCCCGGGGAGGGATAGTTCCTGCGTCGTTCAGAAGGCGCACCAGAACGCCATTATTGAGGACCTAACCGACAAGCCTTGTTACTGTGACCACGCTTGCTTGAAATTGGGAGATTGTTGCCCCGACTTCCGGGAGACTTGCGGAGTGATCGATTGCGTTGTTTCAAGCTGGGGCTCGTGGTCGGAATGCGATACCACCTGCGGCTCTGGGAGCATGGTGCGAACGCGTAGGATCGTGCAAGCCCCAGCGCATGGAGGTCGGCACTGCCCCTCGCTGGTCCAGCGGAGGGCATGCCAAGAACATCAGGGGTGCTCATCGGATAGTGACGTACCATTACGAGACGAAACAGCGATGCTCTTACCGGGAGGACTTTCGGTCAGTCGACATTCGAACGAGACAGTGGACATCCGCAAAAACTTGAGACTTCGCAACCCAGACGATCCTGAATCTAATTCGCACAGAGAGTACTGCGCTCAATACGAAGTGACTAAAGTCTCGAAAGCCTGCCACGCGGATTCGGACTACAAAGCGTTGAGGGAAGGCAATACTGTATGCGTGCTTTGCGAGTCGGCCGCTTTAAGACGTGACTTGAAATGGAGATGTAATGGCCATGGCGTCTCTGGACACACGACGCGCTTCTACGCGCTCGTAGCTCCACACTGTCACGGGAAGTGGATCAGATCCGACCACGACCTGGACAAGACAAGCGACTGCTGCACCAACCCTGACTTCATCTTTGTTTGA

Protein

MHRHFLCLSLFIFAGYCDANYCRDANLCCPGRDSSCVVQKAHQNAIIEDLTDKPCYCDHACLKLGDCCPDFRETCGVIDCVVSSWGSWSECDTTCGSGSMVRTRRIVQAPAHGGRHCPSLVQRRACQEHQGCSSDSDVPLRDETAMLLPGGLSVSRHSNETVDIRKNLRLRNPDDPESNSHREYCAQYEVTKVSKACHADSDYKALREGNTVCVLCESAALRRDLKWRCNGHGVSGHTTRFYALVAPHCHGKWIRSDHDLDKTSDCCTNPDFIFV

Uniprot

A0A2A4J8P8   A0A194Q256   I4DIV7   A0A212FMY3   A0A2H1W741   A0A2H1VF49   + More
A0A2A4J980   A0A139WGN2   J3JUG8   A0A1W4X1P3   A0A2S2ND89   A0A0P6JRX5   A0A2S2Q5N0   J9LYG1   A0A2H8THX7   A0A1Y1ND85   A0A182YIX7   A0A182QAS8   K7J5P5   A0A453Z0J4   A0A453YJR0   A0A182KVB2   A0A1B6JX63   A0A0C9QFM3   A0A182IRS3   A0A0P5Y4I7   A0A087UTP5   A0A0P5YNM0   A0A0P6BIZ5   A0A0P6H7W3   A0A3S3P3E3   A0A0P5XYY5   A0A1J1HQV9   B7PBG4   A0A087TK95   B3MQ97   A0A146LWU2   B4MAN2   A0A0P5BNT3   B4PYV6   A0A131YR38   A0A0N8D1Q5   B4L723   A0A1D1VX54   Q9VZ43   Q1ECA8   A0A1W4UNV9   B3NVC2   A0A1W0X3S7   A0A226F0N7   A0A0P5REY0   A0A132A8W5   A0A2J7QAQ8   A0A0A1WV78   A0A0P5N1E7   Q29HZ9   A0A0K8WBL7   A0A1I8PFU2   W8AKA6   A0A0N8E6A0   D3PFW3   A0A0K2T9M9   Q17PX8   A0A182NV81   A0A2S2NE13   A0A182GMR5   A0A182JNG1   A0A182REI4   A0A182P1X0   A0A182TZJ6   B0W0N7   Q7Q232   A0A182X0H5   A0A232FK38   A0A182FVV2   E1ZXJ8   A0A232FJM8   A0A0C9PV87   A0A151J2B4   F4WIA7   K1PVE0   A0A026WPG2   A0A195F3A4   A0A158NZT5   A0A195BL93   A0A1B0CTT7   A0A151WR12   A0A084VB45   A0A195CM42   A0A182W9J3  

Pubmed

26354079    22651552    22118469    18362917    19820115    22516182    + More
17510324    26999592    28004739    25244985    20075255    12364791    20966253    17994087    18057021    26823975    17550304    26830274    27649274    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26555130    25830018    15632085    24495485    26483478    28648823    20798317    21719571    22992520    24508170    30249741    21347285    24438588   

EMBL

NWSH01002463    PCG68239.1    KQ459582    KPI99079.1    AK401225    BAM17847.1    + More
AGBW02007651    OWR55050.1    ODYU01006745    SOQ48878.1    ODYU01002247    SOQ39473.1    PCG68238.1    KQ971345    KYB27054.1    BT126881    AEE61843.1    GGMR01002565    MBY15184.1    GDUN01000897    JAN95022.1    GGMS01003833    MBY73036.1    ABLF02028374    ABLF02028375    ABLF02028377    ABLF02033990    GFXV01001922    MBW13727.1    GEZM01006011    JAV95831.1    AXCN02001805    AAAB01008979    APCN01003486    GECU01030527    GECU01003937    JAS77179.1    JAT03770.1    GBYB01013278    JAG83045.1    GDIP01076105    LRGB01003325    JAM27610.1    KZS03252.1    KK121567    KFM80734.1    GDIP01056125    JAM47590.1    GDIP01015147    JAM88568.1    GDIQ01023325    JAN71412.1    NCKU01001793    RWS11239.1    GDIP01067164    JAM36551.1    CVRI01000009    CRK88601.1    ABJB010103136    ABJB010727720    ABJB010873162    ABJB011056693    ABJB011084418    ABJB011126878    DS676014    EEC03936.1    KK115611    KFM65534.1    CH902621    EDV44523.2    KPU81622.1    KPU81623.1    GDHC01007144    JAQ11485.1    CH940655    EDW66291.2    GDIP01186902    JAJ36500.1    CM000162    EDX02034.2    GEDV01007150    JAP81407.1    GDIP01077407    JAM26308.1    CH933812    EDW06169.2    KRG07167.1    BDGG01000012    GAV05651.1    AE014298    AAF47985.3    BT025826    ABF85726.1    CH954180    EDV46110.2    MTYJ01000019    OQV22143.1    LNIX01000001    OXA62486.1    GDIQ01102364    JAL49362.1    JXLN01011567    KPM07431.1    NEVH01016329    PNF25649.1    GBXI01011746    JAD02546.1    GDIQ01156236    JAK95489.1    CH379064    EAL31607.3    GDHF01009874    GDHF01003842    JAI42440.1    JAI48472.1    GAMC01021407    GAMC01021406    GAMC01021405    JAB85148.1    GDIQ01057668    GDIQ01039485    JAN37069.1    BT120519    ADD24159.1    HACA01005139    CDW22500.1    CH477188    EAT48816.1    GGMR01002842    MBY15461.1    JXUM01075081    JXUM01075082    JXUM01075083    JXUM01075084    KQ562867    KXJ74969.1    DS231818    EDS41339.1    EAA13712.3    NNAY01000131    OXU30687.1    GL435066    EFN74081.1    OXU30689.1    GBYB01005313    JAG75080.1    KQ980404    KYN16177.1    GL888175    EGI66038.1    JH817541    EKC25703.1    KK107139    QOIP01000003    EZA57910.1    RLU24659.1    KQ981856    KYN34662.1    ADTU01004989    ADTU01004990    KQ976440    KYM86473.1    AJWK01027975    KQ982829    KYQ50115.1    ATLV01005280    KE524276    KFB35189.1    KQ977580    KYN01775.1   

Proteomes

UP000218220    UP000053268    UP000007151    UP000007266    UP000192223    UP000007819    + More
UP000076408    UP000075886    UP000002358    UP000075840    UP000075882    UP000075880    UP000076858    UP000054359    UP000285301    UP000183832    UP000001555    UP000007801    UP000008792    UP000002282    UP000009192    UP000186922    UP000000803    UP000192221    UP000008711    UP000198287    UP000235965    UP000001819    UP000095300    UP000008820    UP000075884    UP000069940    UP000249989    UP000075881    UP000075900    UP000075885    UP000075902    UP000002320    UP000007062    UP000076407    UP000215335    UP000069272    UP000000311    UP000078492    UP000007755    UP000005408    UP000053097    UP000279307    UP000078541    UP000005205    UP000078540    UP000092461    UP000075809    UP000030765    UP000078542    UP000075920   

PRIDE

Q9VZ43    Q1ECA8   

Pfam

PF01033   Somatomedin_B        + More
PF00090   TSP_1

Interpro

IPR001212   Somatomedin_B_dom        + More
IPR000884   TSP1_rpt       
IPR036383   TSP1_rpt_sf       
IPR039942   SBSPON       
IPR036024   Somatomedin_B-like_dom_sf       

SUPFAM

SSF82895   SSF82895        + More
SSF90188   SSF90188       

Gene 3D

2.20.100.10    

ProteinModelPortal

A0A2A4J8P8   A0A194Q256   I4DIV7   A0A212FMY3   A0A2H1W741   A0A2H1VF49   + More
A0A2A4J980   A0A139WGN2   J3JUG8   A0A1W4X1P3   A0A2S2ND89   A0A0P6JRX5   A0A2S2Q5N0   J9LYG1   A0A2H8THX7   A0A1Y1ND85   A0A182YIX7   A0A182QAS8   K7J5P5   A0A453Z0J4   A0A453YJR0   A0A182KVB2   A0A1B6JX63   A0A0C9QFM3   A0A182IRS3   A0A0P5Y4I7   A0A087UTP5   A0A0P5YNM0   A0A0P6BIZ5   A0A0P6H7W3   A0A3S3P3E3   A0A0P5XYY5   A0A1J1HQV9   B7PBG4   A0A087TK95   B3MQ97   A0A146LWU2   B4MAN2   A0A0P5BNT3   B4PYV6   A0A131YR38   A0A0N8D1Q5   B4L723   A0A1D1VX54   Q9VZ43   Q1ECA8   A0A1W4UNV9   B3NVC2   A0A1W0X3S7   A0A226F0N7   A0A0P5REY0   A0A132A8W5   A0A2J7QAQ8   A0A0A1WV78   A0A0P5N1E7   Q29HZ9   A0A0K8WBL7   A0A1I8PFU2   W8AKA6   A0A0N8E6A0   D3PFW3   A0A0K2T9M9   Q17PX8   A0A182NV81   A0A2S2NE13   A0A182GMR5   A0A182JNG1   A0A182REI4   A0A182P1X0   A0A182TZJ6   B0W0N7   Q7Q232   A0A182X0H5   A0A232FK38   A0A182FVV2   E1ZXJ8   A0A232FJM8   A0A0C9PV87   A0A151J2B4   F4WIA7   K1PVE0   A0A026WPG2   A0A195F3A4   A0A158NZT5   A0A195BL93   A0A1B0CTT7   A0A151WR12   A0A084VB45   A0A195CM42   A0A182W9J3  

PDB

4OKU     E-value=6.82486e-06,     Score=117

KEGG

101745621    no KO assigned | (RefSeq) somatomedin-B and thrombospondin type-1 domain-containing protein-like

GO

GO:0005044   GO:0030247   GO:0006955   GO:0016021   GO:0004064   GO:0031177   GO:0016740   GO:0006108   GO:0030060   GO:0016615   GO:0000049   GO:0016876  

PANTHER

PTHR20920  

SignalP

Position:   1 - 19,         Likelihood:  0.999830

 

 

Length:

275

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.0752699999999999

Exp number, first 60 AAs:

0.07511

Total prob of N-in:

0.01319

outside

1  -  275

 

 

Pi

231.275555

Theta

20.337718

Tajima's D

0.695362

CLR

0.837438

CSRT

0.581370931453427

Interpretation

Uncertain