Silkworm Genome Informatics Database

Gene

KWMTBOMO09507

Pre Gene Modal

BGIBMGA013050

Annotation

PREDICTED:_transmembrane_protease_serine_2_isoform_X2_[Tribolium_castaneum]

Location

Bomo_Chr16(-):2713243-2719737 View in EpiBrowser

Location in the cell

PlasmaMembrane Reliability : 3.217

CDS

ATGACTTTTTTAAATATTATATCAATTGCGATCTTTGGTGTGGTCTCTCTGGTTTTGGCTGTGGCGACGAGAACTGTACAAGCAGCATTGACGTCTCCGTGTCCTGAGTATTTCACTTACGAGATATCCCCATCGACACCAGATCGGTGGCATGGCGTATTAGTGCTGCCTCCTGAAATGGTTGCAGACTACATGTGGATTTACATTGCATTGAATCGCAAAACTCATATGTTTGCCAGCGACAGCGAATCTACGTCGACCGAAAACTTACAAGAATTCATAATGCATAGAAGAGATTATTTCAATTATGAAAGTACAAGGAGTGAAGAAACTGTAAGGTTTGTTACATCTTACGATTATGCCCGGCCGATACCGCGTGTCAAGATTATAAGAGTCAATGGACGCGAAATATGCAGAGACAATAATACGACACAAGTCGGAAACGAGATAAGCTTTCCGACGCGCCCAGAGCTTCCGAATATGCTGCTTATATCAAAATTGAATGCAACCGGCTATACACCGGAGTTTTTGACAATTTTCCAAAACTCAACCTCTGGAGTTGCGCGATAA

Protein

MTFLNIISIAIFGVVSLVLAVATRTVQAALTSPCPEYFTYEISPSTPDRWHGVLVLPPEMVADYMWIYIALNRKTHMFASDSESTSTENLQEFIMHRRDYFNYESTRSEETVRFVTSYDYARPIPRVKIIRVNGREICRDNNTTQVGNEISFPTRPELPNMLLISKLNATGYTPEFLTIFQNSTSGVAR

Similarity

Belongs to the peptidase S1 family.

Uniprot

H9JU38 A0A437BFH1 A0A0T6BG32 A0A212FMT5 H9JU36 A0A2A4JC25 + More
A0A1W4WW05 A0A1W4X5G3 A0A1W4WW21 A0A1L8DQJ7 A0A2H1WY65 A0A2H1VUV7 U4U6C5 A0A2H8TNC9 A0A0T6B821 A0A1Q3FNW2 A0A1Q3FNX2 A0A1Q3FNW8 J9JYI8 A0A2S2P677 A0A2S2NK42 A0A182VR65 A0A182TBR0 A0A182F937

Pubmed

19121390 22118469 23537049

EMBL

BABH01004020 BABH01004021 RSAL01000071 RVE49130.1 LJIG01000649 KRT86291.1 + More
AGBW02007651 OWR55051.1 BABH01003989 BABH01003990 NWSH01001939 PCG69625.1 GFDF01005351 JAV08733.1 ODYU01011959 SOQ58001.1 ODYU01004409 SOQ44252.1 KB632003 ERL87858.1 GFXV01003871 MBW15676.1 LJIG01009271 KRT83413.1 GFDL01005788 JAV29257.1 GFDL01005778 JAV29267.1 GFDL01005760 JAV29285.1 ABLF02004866 ABLF02020674 ABLF02020678 ABLF02020681 GGMR01012275 MBY24894.1 GGMR01004934 MBY17553.1

Proteomes

UP000005204 UP000283053 UP000007151 UP000218220 UP000192223 UP000030742 + More
UP000007819 UP000075920 UP000075901 UP000069272

PRIDE

H9JU38 H9JU36

Pfam

PF16030 GD_N + More
PF00089 Trypsin

Interpro

IPR031986   GD_N        + More
IPR009003   Peptidase_S1_PA
IPR001314   Peptidase_S1A
IPR001254   Trypsin_dom
IPR018114   TRYPSIN_HIS

SUPFAM

SSF50494 SSF50494

CDD

cd00190 Tryp_SPc

ProteinModelPortal

H9JU38 A0A437BFH1 A0A0T6BG32 A0A212FMT5 H9JU36 A0A2A4JC25 + More
A0A1W4WW05 A0A1W4X5G3 A0A1W4WW21 A0A1L8DQJ7 A0A2H1WY65 A0A2H1VUV7 U4U6C5 A0A2H8TNC9 A0A0T6B821 A0A1Q3FNW2 A0A1Q3FNX2 A0A1Q3FNW8 J9JYI8 A0A2S2P677 A0A2S2NK42 A0A182VR65 A0A182TBR0 A0A182F937

KEGG

101746300 no KO assigned | (RefSeq) uncharacterized LOC101746300

GO

GO:0004252

SignalP

Position: 1 - 28, Likelihood: 0.820740

Length:

189

Number of predicted TMHs:

1

Exp number of AAs in TMHs:

28.24159

Exp number, first 60 AAs:

24.1463

Total prob of N-in:

0.72578

POSSIBLE N-term signal

sequence

outside

1 - 3

TMhelix

4 - 21

inside

22 - 189

Pi

168.33391

Theta

171.159492

Tajima's D

0.122018

CLR

179.378974

CSRT

0.400629968501575

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics

Multiple alignment of Orthologues

Gene Tree