Silkworm Genome Informatics Database

Gene

KWMTBOMO09503 Validated by peptides from experiments

Pre Gene Modal

BGIBMGA012812

Annotation

sex-lethal_isoform_2_[Bombyx_mori]

Location

Bomo_Chr16(+):2664508-2686624 View in EpiBrowser

Full name

Sex-lethal homolog

Location in the cell

Nuclear Reliability : 1.733

CDS

ATGTGTGAACGTTATCCGGGATACTTGTTTGGTGGCACTCCTGTCAGTAGCTGGGACAGGAGTTTCAATTCTTTGGAAAATCAAATCCAACAGCAGTACCGAGGCAGAGCGGGTTCGAACGCTCGATACTGGGGCAGCATGTCTGAAGGAGGGGGACTCTCGGCCGCCGGCGGGGACACCGCCAGGACTAATCTAATCGTGAACTATCTGCCTCAGAATATAACAGAGAAGGATCTTTACGCGATGTTCGTTACCATAGGACCTATCGAGAGCTGTCGAGTGATGAAGGACTTTAAGACTGGCTACAGTTACGGATTCGGTTTCGTGAACTTCACCAGGGAAGAGGACGCGGCTCGAGCGATCGACACTTTCAATGGTTACCAGCTCCGAAATAAACGGTTAAAGGTGTCGTACGCGAGGCCTTCCGGGGATGACATTAAAGAAACGAATCTATACGTAACGAACTTACCGCGCGCCATAACTGACGATCAGCTGGAGACGATATTCGGGAAATACGGGAGGATAGTACAGAAACACATACTGAGAGATAAGAACAGCGGAACCCCGAGAGGAGTCGCCTTCGTTCGATACGATAAAAGGGAAGAAGCGCAAGAGGCAATAGCAGCGTTGAACAACGTGATACCTGAAGGAGGAACCGAGCCACTCAGCGTTAAAGTAGCAGAGGAACATGGCAAGCAGAAGGCGGCTTATTATGCCGGATGGAGCGCGGGCTACCAACAGAATCGAGGTGATTATTCGTGGAACTGCAACACCTGTCCGCCGCCGGAAGCTTGGGAGGGTTTCCCTCCGCCCCCATTATTGGAAAGTGTACCCAACACGCCTAAGAACGGCTGCCGGCCGGGCGTTTGTAACAGACCTCCGTACTCAGTGCCCGGGAAGGTAGCCAACCGAGGAGGTCGAGCGAATAACAATGTGGCTTAA

Protein

MCERYPGYLFGGTPVSSWDRSFNSLENQIQQQYRGRAGSNARYWGSMSEGGGLSAAGGDTARTNLIVNYLPQNITEKDLYAMFVTIGPIESCRVMKDFKTGYSYGFGFVNFTREEDAARAIDTFNGYQLRNKRLKVSYARPSGDDIKETNLYVTNLPRAITDDQLETIFGKYGRIVQKHILRDKNSGTPRGVAFVRYDKREEAQEAIAALNNVIPEGGTEPLSVKVAEEHGKQKAAYYAGWSAGYQQNRGDYSWNCNTCPPPEAWEGFPPPPLLESVPNTPKNGCRPGVCNRPPYSVPGKVANRGGRANNNVA

Description

Unknown; apparently not involved in somatic sex determination.

Keywords

Alternative splicing Complete proteome Nucleus Reference proteome Repeat RNA-binding

Feature

chain Sex-lethal homolog
splice variant In isoform 3.

Uniprot

Q3HM25 Q25C95 Q3HM26 A0A2W1BNN5 Q25C94 A0A3S2M1Y0 + More
A0A212FMV0 A0A2H1VNR0 A0A194Q0G7 A0A1E1WQQ1 A0A0N1IP89 A0A2A4IV61 A0A151IHF6 O01671-2

Pubmed

16604108 16604109 28756777 22118469 26354079 10791828 + More

EMBL

DQ209269 ABA71352.1 AB207267 BAE86938.1 DQ209268 ABA71351.1 + More
KZ150116 PZC73273.1 AB207268 BAE86939.1 RSAL01000071 RVE49131.1 AGBW02007651 OWR55053.1 ODYU01003310 SOQ41894.1 KQ459582 KPI99072.1 GDQN01001746 JAT89308.1 KQ460651 KPJ13008.1 NWSH01006180 PCG63611.1 KQ977606 KYN01419.1 AF110846 AJ000546 AJ245662 X98769 X98770 X98771

Proteomes

UP000283053 UP000007151 UP000053268 UP000053240 UP000218220 UP000078542 + More
UP000015102

PRIDE

Q3HM25 Q25C95 Q3HM26 Q25C94

Pfam

PF00076 RRM_1

Interpro

IPR012677   Nucleotide-bd_a/b_plait_sf        + More
IPR000504   RRM_dom
IPR002343   Hud_Sxl_RNA
IPR035979   RBD_domain_sf
IPR006546   Sxl

SUPFAM

SSF54928 SSF54928

Gene 3D

3.30.70.330

ProteinModelPortal

Q3HM25 Q25C95 Q3HM26 A0A2W1BNN5 Q25C94 A0A3S2M1Y0 + More
A0A212FMV0 A0A2H1VNR0 A0A194Q0G7 A0A1E1WQQ1 A0A0N1IP89 A0A2A4IV61 A0A151IHF6 O01671-2

PDB

4QQB E-value=1.7623e-72, Score=692

KEGG

692349 K18747 protein sex-lethal | (RefSeq) Sxl; sex-lethal

GO

GO:0003723 GO:0000380 GO:0005634 GO:0007530 GO:0003676 GO:0000166 GO:0019898 GO:0005856 GO:0006108 GO:0030060 GO:0016615 GO:0000049 GO:0016876

Subcellular location

Nucleus

Length:

313

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00137

Exp number, first 60 AAs:

0.00075

Total prob of N-in:

0.01156

outside

1 - 313

Pi

193.716173

Theta

187.074265

Tajima's D

0.433281

CLR

0.499447

CSRT

0.491225438728064

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics