Gene

KWMTBOMO09496  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA012809

Annotation

PREDICTED:_RRP12-like_protein_[Plutella_xylostella]

Location

Bomo_Chr16(+):2540548-2552393      View in EpiBrowser

Full name

RRP12-like protein      

Location in the cell

Nuclear   Reliability : 4.186

CDS

ATGGTACTGGTCGGCGTGTCGGCCCAGCCGCCGCGCGTGGTCAGCGCGACACTCCGCGCCCTCGCCTCGGTTCTATTCAACTTCTCCGAGGATATGGGCCTGGAGACGGTCCAGGGTCTGCTGGAGAAGGTCGCCGAACAGATGCTGAGCACCAACAGAGAAATAGTGGCGGCCGCGCTCAGCTTTCTCAAGGTTTACACAAAGGTTATACCCGTGGACGTCTTAGCCGGGAGCCTCCCGCTGATATTCAAGACTCTATCGAACATGCCCGATGACTGCAAGCGTCATTCTCGTCTCGAGATAGGCTATTTCCTGAGCAAGATGCTGAGGAAGTACGGAGCGGACACGGTTGAGAAGCTGATACCGAAAACGGACGAGGTCATGTTGCGTAGATTCAGGAACATCAGGAAAATGGATAACAGGAAGAAGAGACTGAAGGAGCGGAACGCAGACCAGGATTCTGAATCTGAAACAGAGACGCCGATCAAGGGCACGTCGAACACCCTGGAAGACATTCTGAAGGATTCGGACTCCGACATGGAGATGGTGGATGATGAAGTCGCGCCGAAACCCAAAGCGAAGAAGACGCGCAGCCAGGCCTGGATCCAGGACGACCCGGAGAACATCGTCGACCTGGCCGACGTGTCAGCCAGCAGGAAAATCACTGCTACGAATCCAAGAAGCGAACAGAGAACGACTGAGCTGAAGTCGCAGCGGAGTAAGGACGGCGGGTTCCGGACGGCCCCAGACGGCCGACTCATCATCAGCGACCAGACCTTCGATGATGACGACGACGAACCGAAGCCCAGCGGCGACGTTGACTCGGACACCGATGATACAGACAACGAAACCCAAGGCGGCAAGCCTTCGAAGCTTCTGAAGCCCGGAACGAAACGGCGCTACGACGACATCCTGAGCATCAGGAGCGGCAGGAGCAACCGCAGCCGGGCCTCCACCGCCACCGTCGGCTCCAAGTACAAGACCGGGGGGAAGGGGATACACAGGAATTTAGATTCTGCGGCGTCTGTAGCGTCTACGCTGGGAGGTGATTACAGACCGAAGAAAGCCAAGGGCGATATCAAGAAGAAGGGCAAGCACGATCCTTACGCCTACCTACCCCTGTCCAGGACAAATCTCAATAAAAGGAAAAAATCTGTCAACAGCAAACAGTTCAAAGGGATAGTGAAATCAAAAACAAAAGGAGTTCGAATCAAATCAAAAAAAGGAAAATAA

Protein

MVLVGVSAQPPRVVSATLRALASVLFNFSEDMGLETVQGLLEKVAEQMLSTNREIVAAALSFLKVYTKVIPVDVLAGSLPLIFKTLSNMPDDCKRHSRLEIGYFLSKMLRKYGADTVEKLIPKTDEVMLRRFRNIRKMDNRKKRLKERNADQDSESETETPIKGTSNTLEDILKDSDSDMEMVDDEVAPKPKAKKTRSQAWIQDDPENIVDLADVSASRKITATNPRSEQRTTELKSQRSKDGGFRTAPDGRLIISDQTFDDDDDEPKPSGDVDSDTDDTDNETQGGKPSKLLKPGTKRRYDDILSIRSGRSNRSRASTATVGSKYKTGGKGIHRNLDSAASVASTLGGDYRPKKAKGDIKKKGKHDPYAYLPLSRTNLNKRKKSVNSKQFKGIVKSKTKGVRIKSKKGK

Similarity

Belongs to the RRP12 family.

Keywords

Complete proteome   Nucleus   Phosphoprotein   Reference proteome  

Feature

chain  RRP12-like protein

Uniprot

H9JTE7   A0A1E1WKD5   A0A2A4JIB8   A0A437BFC6   A0A2H1W140   S4PIQ2   + More
A0A0N0PC57   A0A212FMT2   A0A0T6AXA0   D6WZI8   A0A1Y1JYP8   N6URZ0   N6UP81   K7IVE6   A0A0J7NVB3   A0A195EL12   E9J7T3   A0A0C9QA54   A0A158NPQ6   A0A195AT88   A0A182RNB5   F4W7I2   E2AJV9   A0A151WVD8   A0A0L7RJQ9   A0A232EV45   E2BNF3   A0A067R5V1   A0A154NVZ1   A0A195ESW9   A0A182P6M9   A0A151IMR5   A0A1I8NRM7   A0A182G4E5   A0A1B6K135   A0A088ADE3   W4VRP4   A0A182M725   A0A1Q3G0P6   A0A1Q3G0S0   A0A2A3EDN3   A0A084WP17   A0A0N1ITF8   A0A182VYK1   A0A182LG11   A0A2J7PYA8   A0A0D3QC30   A0A182K671   A0A0L0C2M7   A0A0D3QBY0   T1PKZ6   A0A1I8N8S8   A0A0D3QC25   A0A0D3QBX1   A0A0D3QCH2   A0A0D3QCN5   A0A182HU17   A0A0D3QCP5   A0A1B6EYR5   A0A0D3QC34   A0A0D3QBX4   A0A0D3QCP0   Q7QD52   A0A0D3QBW6   A0A0D3QBW8   A0A0D3QBX0   A0A0D3QCH0   A0A0D3QC38   A0A0D3QBX7   A0A0D3QCI3   A0A0D3QCM9   A0A0D3QBW3   A0A0D3QBW7   A0A182U002   B3N0A0   A0A182WRR1   A0A182FPG6   A0A224XD31   Q16NI7   A0A2M4A4H5   A0A2M4A4K2   A0A0K2TSZ5   A0A1L8DAK5   A0A2M3ZFX8   A0A2M4A4V3   A0A2M3ZFM3   A0A1A9WXZ1   B4Q2E0   X2JEW2   Q9VYA7   C9QPD2   W5JGT3   Q29FM7   A0A0A1X1A8   A0A1W4VH78   A0A182NDX0  

Pubmed

19121390    23622113    26354079    22118469    18362917    19820115    + More
28004739    23537049    20075255    21282665    21347285    21719571    20798317    28648823    24845553    26483478    24438588    20966253    25552603    26108605    25315136    12364791    14747013    17210077    17994087    17510324    17550304    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    12537569    17372656    18327897    20920257    23761445    15632085    25830018   

EMBL

BABH01004033    BABH01004034    GDQN01003723    JAT87331.1    NWSH01001411    PCG71324.1    + More
RSAL01000071    RVE49136.1    ODYU01005702    SOQ46815.1    GAIX01005320    JAA87240.1    KQ460651    KPJ13017.1    AGBW02007651    OWR55062.1    LJIG01022643    KRT79477.1    KQ971372    EFA09698.2    GEZM01103092    JAV51567.1    APGK01001802    KB734468    ENN83556.1    ENN83555.1    AAZX01004302    LBMM01001428    KMQ96335.1    KQ978730    KYN28945.1    GL768630    EFZ11115.1    GBYB01000109    JAG69876.1    ADTU01022709    KQ976745    KYM75438.1    GL887844    EGI69855.1    GL440100    EFN66275.1    KQ982708    KYQ51808.1    KQ414581    KOC71033.1    NNAY01002059    OXU22207.1    GL449414    EFN82732.1    KK852722    KDR17709.1    KQ434766    KZC03741.1    KQ981986    KYN31251.1    KQ977026    KYN06248.1    JXUM01143584    KQ569626    KXJ68574.1    GECU01002568    JAT05139.1    GANO01000610    JAB59261.1    AXCM01005292    GFDL01001666    JAV33379.1    GFDL01001663    JAV33382.1    KZ288271    PBC29810.1    ATLV01024815    KE525361    KFB51961.1    KQ435812    KOX72724.1    NEVH01020850    PNF21318.1    KP274273    AJC98357.1    JRES01000984    KNC26487.1    KP274284    AJC98368.1    KA648790    AFP63419.1    KP274268    AJC98352.1    KP274269    AJC98353.1    KP274271    AJC98355.1    KP274270    AJC98354.1    APCN01000599    KP274280    AJC98364.1    GECZ01026583    JAS43186.1    KP274278    AJC98362.1    KP274274    AJC98358.1    KP274275    AJC98359.1    AAAB01008859    EAA07536.4    KP274272    AJC98356.1    KP274277    AJC98361.1    KP274282    AJC98366.1    KP274266    AJC98350.1    KP274283    AJC98367.1    KP274279    AJC98363.1    KP274281    AJC98365.1    KP274265    AJC98349.1    KP274267    KP274276    AJC98351.1    AJC98360.1    KP274264    AJC98348.1    CH902640    EDV38304.1    GFTR01008738    JAW07688.1    CH477823    EAT35907.1    GGFK01002338    MBW35659.1    GGFK01002339    MBW35660.1    HACA01011549    CDW28910.1    GFDF01010595    JAV03489.1    GGFM01006715    MBW27466.1    GGFK01002439    MBW35760.1    GGFM01006616    MBW27367.1    CM000162    EDX01601.1    AE014298    AHN59688.1    AY051753    BT100014    ACX54922.1    ADMH02001267    ETN63296.1    CH379066    EAL31373.3    GBXI01009874    GBXI01004258    JAD04418.1    JAD10034.1   

Proteomes

UP000005204    UP000218220    UP000283053    UP000053240    UP000007151    UP000007266    + More
UP000019118    UP000002358    UP000036403    UP000078492    UP000005205    UP000078540    UP000075900    UP000007755    UP000000311    UP000075809    UP000053825    UP000215335    UP000008237    UP000027135    UP000076502    UP000078541    UP000075885    UP000078542    UP000095300    UP000069940    UP000249989    UP000005203    UP000075883    UP000242457    UP000030765    UP000053105    UP000075920    UP000075882    UP000235965    UP000075881    UP000037069    UP000075903    UP000095301    UP000075840    UP000007062    UP000075902    UP000007801    UP000076407    UP000069272    UP000008820    UP000091820    UP000002282    UP000000803    UP000000673    UP000001819    UP000192221    UP000075884   

PRIDE

H9JTE7    X2JEW2    Q9VYA7    C9QPD2   

Pfam

PF08161   NUC173

Interpro

IPR016024   ARM-type_fold        + More
IPR012978   Uncharacterised_NUC173       
IPR011989   ARM-like       

SUPFAM

SSF48371   SSF48371       

Gene 3D

1.25.10.10    

ProteinModelPortal

H9JTE7   A0A1E1WKD5   A0A2A4JIB8   A0A437BFC6   A0A2H1W140   S4PIQ2   + More
A0A0N0PC57   A0A212FMT2   A0A0T6AXA0   D6WZI8   A0A1Y1JYP8   N6URZ0   N6UP81   K7IVE6   A0A0J7NVB3   A0A195EL12   E9J7T3   A0A0C9QA54   A0A158NPQ6   A0A195AT88   A0A182RNB5   F4W7I2   E2AJV9   A0A151WVD8   A0A0L7RJQ9   A0A232EV45   E2BNF3   A0A067R5V1   A0A154NVZ1   A0A195ESW9   A0A182P6M9   A0A151IMR5   A0A1I8NRM7   A0A182G4E5   A0A1B6K135   A0A088ADE3   W4VRP4   A0A182M725   A0A1Q3G0P6   A0A1Q3G0S0   A0A2A3EDN3   A0A084WP17   A0A0N1ITF8   A0A182VYK1   A0A182LG11   A0A2J7PYA8   A0A0D3QC30   A0A182K671   A0A0L0C2M7   A0A0D3QBY0   T1PKZ6   A0A1I8N8S8   A0A0D3QC25   A0A0D3QBX1   A0A0D3QCH2   A0A0D3QCN5   A0A182HU17   A0A0D3QCP5   A0A1B6EYR5   A0A0D3QC34   A0A0D3QBX4   A0A0D3QCP0   Q7QD52   A0A0D3QBW6   A0A0D3QBW8   A0A0D3QBX0   A0A0D3QCH0   A0A0D3QC38   A0A0D3QBX7   A0A0D3QCI3   A0A0D3QCM9   A0A0D3QBW3   A0A0D3QBW7   A0A182U002   B3N0A0   A0A182WRR1   A0A182FPG6   A0A224XD31   Q16NI7   A0A2M4A4H5   A0A2M4A4K2   A0A0K2TSZ5   A0A1L8DAK5   A0A2M3ZFX8   A0A2M4A4V3   A0A2M3ZFM3   A0A1A9WXZ1   B4Q2E0   X2JEW2   Q9VYA7   C9QPD2   W5JGT3   Q29FM7   A0A0A1X1A8   A0A1W4VH78   A0A182NDX0  

KEGG

101747080    K14794 ribosomal RNA-processing protein 12 | (RefSeq) RRP12-like protein

GO

GO:0005634   GO:0005488   GO:0005737   GO:0008092   GO:0019898   GO:0005856   GO:0006108   GO:0030060   GO:0016615   GO:0000049   GO:0016876  

Subcellular location

Nucleus  

Length:

410

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.12191

Exp number, first 60 AAs:

0.02913

Total prob of N-in:

0.00827

outside

1  -  410

 

 

Pi

270.305996

Theta

177.334884

Tajima's D

1.967803

CLR

0.100848

CSRT

0.87745612719364

Interpretation

Uncertain