SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO09495  Validated by peptides from experiments
Pre Gene Modal
BGIBMGA014503
Annotation
PREDICTED:_RRP12-like_protein_[Amyelois_transitella]
Full name
RRP12-like protein      
Location in the cell
Nuclear   Reliability : 2.347
 

Sequence

CDS
ATGGGTAAATTTAGATCAAAACTTAAAGGCAAAACGAAGGGGAAACGATGGCAGAAAGGACAGTCATCAAATTCGAACCCGAAAATTCAAAAATACAGGGAGATGGCAAAATCCCGGTTTTTTCAGGAAAACTTAGGCAGCACTGGCTTAACACAGCAAGCGGTGTCCAAGCATGAAGCTATGATGACATATGGACATAAAACTAACAAAACAAAATCAGATGCTGAAAATGAACTGACCATAGTAAAAGAGCTTGAAAATATGTCGGTCAAGACCGGAGACGAGGGATCAGAGTCTGAATACTCTGGTACATTAAGATCAGGAACATTTAAGACATTTCAAACATTTGCATCTGATTGGAGTCAATGTTCAAATATCAGCTTTCATAAATTGCTAAATCGTTTTGATTCAAACAATGCACTGCACAAGGAAATGCTAGCAGTGCTGGCGGCTGTGACTGAAGTTATCAAAGAACAAGGAGGTAAAGAGACTACAACGGAATACTTTGCTGCTCTTATGGAAACTCTAAAGGCATCCGAACTGGAAGACAATTTAGTAGCCACAATAACTTTACTATCAATGGGCATCAAAGCAGTACCACAAGCAGTACTGCGTAAACAATTTTCGGACTCCTCAACAATATTTATGGAATTACTCGAGGAGCATGCTCAGTCTGAAAATGGAGCATTGCTGAGGAGCACAATTGGATGTCTGTCGGTGCTGCTGAGAGCTCAGGAGTATGCTGTCTGGGGTGATTCATCAACTATGAGAGTGTTTGAATCCGTTCTGGCCTTTGCACTGCACTCTAAACCCAAGGTTAGAAAAGCGGCACAACATGCTGTGGTATCTATACTACGCGGAAGTAGCTTCATGATACCATCAGAGGATAAAAAAATTAAGGTACCGAAGTTGCATCCAGCTTCGAACCACGTGGCCGAGTACTGTCTTTCCCAGATCAAAGCAGAGGCGCTGCTCTCCGGTCATCGTCCTGTGTTGCACACACTGACCATGCTACGAGATGTGTTACCGGTGTTCAGCAAGGACAGTATAAAGACTATATGCGAGGCTATCTTATCTCTAATGACCCACAACAATGTCTACATCAAGACATGCTGTCTCCATACACTGCACTCTCTGTTTGCTGCACCACTGGACACTTGTAACTTGACGAGCGGGCTGGCTGTGCAGTTGACCAGAGCCTTAATGGCTTCCAGGCCCCCGGCCAACGATACAGGGCAGGTCTTGGCCTGGGCAGCTGTTTTGCAGCAGGGATATGGGTGTTTAGCTAATCTAGATTTGAATCTGTGCGTGCCAAATTTGCCGTCATTTGTAAACATATGCGTATCGGAGCTATGGCTGTCCGATGTTGCCAGCATTAATTCAGCTTCTACGAATGCACTTAAGGCCATCCTGCACGACTGCGTGAAGCCGGCCATTGAATCCGATGAAATATTCGCGAAGCACAAATCTCACGTAGAGGGTGTTTTCAAAGTGATCGGAGCGGGCCTGGACAATCCCTTCAATCAAGCCATCAGACACGTCATATTGACTATCGCCGTCTGTTTCGAGATAGCCAACGAAAAGATATCGAGCACCCTCGAGCCTCTGCTGAGGAAACTGAACGATCGTCGGGAAAGCCACAACTTCCACAACGACAAGGAAGTCGAACACGCAACCGGATGCGCCATACGGAGCCTGGGTCCGGAGTTTGTTCTCAAAACTATTCCGTTACGAGACAACCCTGATTCGATAAACCTGGAACGGAGCTGGCTGCTGCCGGTTTTGAAAGAAAAAATAACGCATTCGAATTTAAAATATTTCGCAACGGAAATTTTGGAGATGGCAACATTCTGCAGGAAGAAGTCTAGGGAGCTGTCACAGGCCGGCGACGTGCCGGGCTCGCACACGTACGAACTGCTCTGCAATCAATTCTGGGCTTTGCTGCCCAGTTTCTGCAATAGCCCGAAGGATATCAAGGACACCTTCAAGTTCATGGCCAGAGTGCTAGGTAACGTTCTCAAAGACAATCCGGAGTTCAGACTGTCGGTGATGCAGGCTCTGCGGAAACTCATCGCTTGCTCGTTAGAAAACGACGAGGACAAGCTAGAGATGAGCAGATACGCGAAAAACTACCTCCCGATCCTGCTGAACGTATACATGTCTCCTGCCAAGGGCAGCAGCGCGGAAGGACAGAGATTAGCCGCTCTGGAGACCATACAGGTATATCTAAGTATATCGGACGAGAACCTCAACCGAGAACTGTTCGACAACGCCGTGAAGCAATTGGAAGCAGCACGAGACGACCACTTCCAGAGAGAGTCGATATTGGACGTGATAAGAGTGTTGGTACTGTACCAAGAGAGCGATCGAATCGCGAAACTGTTCGACGACTGGCTGTACCCGCTGTGCGAGACCGTGCTGGAGGACCCGAGGACCTTCAAGAAGGCCAAGAAGAAAGCCGCAGCCATGGAGGAAGACTCCGCTGATAAGAAACCCGAACTCCGCTACAAGGACAAGGCGCGTCTCCTCGAGATGGAGCACAAGAAAGCCTACAGAATACTGGAAGAGATATTCAAGAGCGAGAAGGCTCCATGCAAGGAGTTCCTTCGCTCGAACCACAAGAAGATAAAGAAGTTGCTGATGACGTCACTGAACAAAGTCGCCGACAGCAGCAAGGCCGCCAGATTGAGGTGCCTAGAGTGCTTGATCAACACGACGCCGACCCTGAACGCGGAGAGCAAGCTGCTGAGGAGTGCTATAGCCGAGTCCGTTGTCTGCACGAGAGATATTAATTCGAAATGTCGCCAGTGCGCCTTCAATCTGATCACGTGCGTCGGGAACGTGCTGAAGAAGCAAGATGGAGGTACGCCTTTTTTATATATGGCTTAG
Protein
MGKFRSKLKGKTKGKRWQKGQSSNSNPKIQKYREMAKSRFFQENLGSTGLTQQAVSKHEAMMTYGHKTNKTKSDAENELTIVKELENMSVKTGDEGSESEYSGTLRSGTFKTFQTFASDWSQCSNISFHKLLNRFDSNNALHKEMLAVLAAVTEVIKEQGGKETTTEYFAALMETLKASELEDNLVATITLLSMGIKAVPQAVLRKQFSDSSTIFMELLEEHAQSENGALLRSTIGCLSVLLRAQEYAVWGDSSTMRVFESVLAFALHSKPKVRKAAQHAVVSILRGSSFMIPSEDKKIKVPKLHPASNHVAEYCLSQIKAEALLSGHRPVLHTLTMLRDVLPVFSKDSIKTICEAILSLMTHNNVYIKTCCLHTLHSLFAAPLDTCNLTSGLAVQLTRALMASRPPANDTGQVLAWAAVLQQGYGCLANLDLNLCVPNLPSFVNICVSELWLSDVASINSASTNALKAILHDCVKPAIESDEIFAKHKSHVEGVFKVIGAGLDNPFNQAIRHVILTIAVCFEIANEKISSTLEPLLRKLNDRRESHNFHNDKEVEHATGCAIRSLGPEFVLKTIPLRDNPDSINLERSWLLPVLKEKITHSNLKYFATEILEMATFCRKKSRELSQAGDVPGSHTYELLCNQFWALLPSFCNSPKDIKDTFKFMARVLGNVLKDNPEFRLSVMQALRKLIACSLENDEDKLEMSRYAKNYLPILLNVYMSPAKGSSAEGQRLAALETIQVYLSISDENLNRELFDNAVKQLEAARDDHFQRESILDVIRVLVLYQESDRIAKLFDDWLYPLCETVLEDPRTFKKAKKKAAAMEEDSADKKPELRYKDKARLLEMEHKKAYRILEEIFKSEKAPCKEFLRSNHKKIKKLLMTSLNKVADSSKAARLRCLECLINTTPTLNAESKLLRSAIAESVVCTRDINSKCRQCAFNLITCVGNVLKKQDGGTPFLYMA

Summary

Similarity
Belongs to the RRP12 family.
Keywords
Complete proteome   Nucleus   Phosphoprotein   Reference proteome  
Feature
chain  RRP12-like protein
EMBL
BABH01042523    BABH01042524    BABH01042525    BABH01042526    ODYU01005702    SOQ46815.1    + More
RSAL01000071    RVE49136.1    KZ150346    PZC71281.1    AGBW02007651    OWR55062.1    KQ460651    KPJ13017.1    KQ459582    KPI99063.1    AAZX01004302    NNAY01002059    OXU22207.1    APGK01001802    KB734468    ENN83556.1    NEVH01020850    PNF21318.1    GBYB01000109    JAG69876.1    KQ971372    EFA09698.2    KK852722    KDR17709.1    ENN83555.1    GFDL01001663    JAV33382.1    GANO01000610    JAB59261.1    CH477823    EAT35907.1    GFDL01001666    JAV33379.1    KQ414581    KOC71033.1    ATLV01024815    KE525361    KFB51961.1    KP274278    AJC98362.1    KP274264    AJC98348.1    KA648790    AFP63419.1    KP274279    AJC98363.1    KP274266    AJC98350.1    KP274271    AJC98355.1    KP274277    AJC98361.1    KP274283    AJC98367.1    KP274274    AJC98358.1    KP274265    AJC98349.1    KP274282    AJC98366.1    KP274275    AJC98359.1    APCN01000599    KP274267    KP274276    AJC98351.1    AJC98360.1    JXUM01143584    KQ569626    KXJ68574.1    AAAB01008859    EAA07536.4    KP274269    AJC98353.1    KP274270    AJC98354.1    KP274284    AJC98368.1    KP274268    AJC98352.1    KP274281    AJC98365.1    KP274273    AJC98357.1    KP274280    AJC98364.1    KP274272    AJC98356.1    JRES01000984    KNC26487.1    ADMH02001267    ETN63296.1    GGFM01006616    MBW27367.1    GGFJ01000510    MBW49651.1    GGFL01006435    MBW70613.1    GGFJ01000511    MBW49652.1    GGFJ01000512    MBW49653.1    AJWK01026873    AJWK01026874    AJWK01026875    DS232577    EDS43616.1    GL449414    EFN82732.1    GDHF01029548    JAI22766.1    CM000162    EDX01601.1    GGFK01002338    MBW35659.1    GGFK01002439    MBW35760.1    KQ977026    KYN06248.1    GL440100    EFN66275.1    GBXI01009874    GBXI01004258    JAD04418.1    JAD10034.1    KZ288271    PBC29810.1    AE014298    AHN59688.1    AY051753    BT100014    ACX54922.1    GAMC01018272    JAB88283.1    GGFK01002339    MBW35660.1    GECU01035585    JAS72121.1    GAKP01020221    GAKP01020219    JAC38733.1    BT088845    ACS54297.1    AXCM01005292    LBMM01001428    KMQ96335.1    KQ976745    KYM75438.1    ADTU01022709    KQ978730    KYN28945.1    CH902640    EDV38304.1    CH954180    EDV47177.2    AXCN02001589    CP012528    ALC49496.1    CH379066    EAL31373.3   
Pfam
PF08161   NUC173
Interpro
IPR016024   ARM-type_fold        + More
IPR012978   Uncharacterised_NUC173       
IPR011989   ARM-like       
SUPFAM
SSF48371   SSF48371       
Gene 3D

Ontologies

Topology

Subcellular location
Nucleus  
Length:
962
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.00854999999999998
Exp number, first 60 AAs:
0.00019
Total prob of N-in:
0.00044
outside
1  -  962
 
 

Population Genetic Test Statistics

Pi
296.861049
Theta
150.840743
Tajima's D
2.623072
CLR
0.30126
CSRT
0.95945202739863
Interpretation
Uncertain
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