SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO09493  Validated by peptides from experiments
Pre Gene Modal
BGIBMGA012808
Annotation
PREDICTED:_uncharacterized_protein_KIAA2013_homolog_[Papilio_xuthus]
Location in the cell
PlasmaMembrane   Reliability : 3.471
 

Sequence

CDS
ATGGAAGTGAGAAGTGAATACCCCGATATGAGTCGGCGAGCCGGTGAAATTTTCAGGCGTATCAATAGATTCGCCGATGGCCCTATGACTAGAAAGAAACTTGTGCTAATATTTTTAGTCGTTATCTTTTTTATGCTTTACGTCGGGCCCACGCTTATGAACTGGTTATTCGGGGATGAATACACTGAAAACGGTCAAAACGCTTGTCAGCAACACTTTTTGCAACCGTTCGAAAGAGCGTTAAGTGAATACGATGCCTATTTACGGCACGAGACGTCGGCTACTTCGTCCTCGTTGAGCCACAACTACGTGCCTTATGTCGGCAACGGCCTGTTTGGCTTGGCCTTAGAACACGACTCGCATTTAAACATTAAATACAGACGAACTTTATCTTTACCTGTGTATTATCACCCATTGTACATTGTAGATGATTACGAAATCAAAGAATTTACTGTTGCGGACTACAAAAATGGAATAGTAAACAGATTTCAGTGTTCAAATACTGGCATTCATATTTCTTATCAATATTACGCACACCGGACGATACCATCATTGTTTGTGCAAGAAATATTGATAAACAATCCAAGTAACAAGCCCAGAGCATTAAAAATATCAACACCAAGAGTTTCAGACTGGCCAACAGCGGTTAAGCAAACCATAAAATTGCATCAAGGCATCGACACTAAAGAATATGAAGTTGTGACAGGAATGATACCAGTACCTGAAAGTGAGAATGTTATTGCCGTAGCTGTTGTGTGCCGAAAAATGAGTAATGTAATCCAAGTCGGATCTAAAGATAGCCTTGACCTTCTGATTTTCACAACCATTCAATACAGCAAACCGGTTAAGAAGGCTGATTATGCAACACAAAAAGACATTGTTGAGAAACTTGCTATAGAGCAGATGGAGAAAGTTATTGCTGAAACTGGAGATATAACGGCTCTTAGAAAACTACGAGAGAATCATTCAAGAGTGTGGCAAGGCCTGTGGTACACGGGCTTCTATATTTCAGACTCCAAAGCTCAAGGAATTATCAATGGTGATAGAATTAATGCAACAATCTATAGCATTCTGTCACAGGTTCGTAGTTATGAACATGAAGATAACATGAAAACATCAACAAAATCAGAGATATTAAGGTCATTGACTTATTCGGAAGGCTGTTATGAAGGCCATTCCACTTTGGATGCCTTGAATTTATGGAAACCATTGAATTCCCTTTCAAGTCTTAATGCAGTAGCGAGTGTATGGCTTTTGACATTAGAAAAACAAGGATGCCATAATCTACTAAAAGCTGGTGCTAGTGGAGTGAGCCAAGCCATGATACTGAGCTTTGGAAGTCTACGTTTCAGTAATCAGCATCTAGAATACAATATCGAACCCTCAAAATTACACAGAGACTTCCTATTCAGAAGAATCAATTATGGAAACATGACACATGTTAATATAAGTGTCATTGTACAAGAAGATAACAAGGCAGCCATATTTGTAGCTTTAGATAGATCGGATAAGACGTACTATGCTTGCGATGCGGGCTGTTTAGATTCACCCGTGCAATTGGGGCCTTACAGAAAATATTTCCCTGTCAAATTAACAGAACCATTAACTGCTATATTATACATAACGGCTGATAAACAGCATATGGAGGATTTGAGGCATGCCATACATGTGAAGGAGGTTGTAGAGGCACCTCCTCACGAGAACCATGTGATAGCTTTACACAAACACGGGCATAGCTTGGGTGGCTTAAATCCATTATTCTGGATTTCTATAATAGTCTTAATAGTCGTCTTCCATTTGTTCCTCTGTAGAATAATAATGAATGAGTTTTGTGACAGCGGTGTTAGCTATCGTAGGTTATACAATAGGCCTTGA
Protein
MEVRSEYPDMSRRAGEIFRRINRFADGPMTRKKLVLIFLVVIFFMLYVGPTLMNWLFGDEYTENGQNACQQHFLQPFERALSEYDAYLRHETSATSSSLSHNYVPYVGNGLFGLALEHDSHLNIKYRRTLSLPVYYHPLYIVDDYEIKEFTVADYKNGIVNRFQCSNTGIHISYQYYAHRTIPSLFVQEILINNPSNKPRALKISTPRVSDWPTAVKQTIKLHQGIDTKEYEVVTGMIPVPESENVIAVAVVCRKMSNVIQVGSKDSLDLLIFTTIQYSKPVKKADYATQKDIVEKLAIEQMEKVIAETGDITALRKLRENHSRVWQGLWYTGFYISDSKAQGIINGDRINATIYSILSQVRSYEHEDNMKTSTKSEILRSLTYSEGCYEGHSTLDALNLWKPLNSLSSLNAVASVWLLTLEKQGCHNLLKAGASGVSQAMILSFGSLRFSNQHLEYNIEPSKLHRDFLFRRINYGNMTHVNISVIVQEDNKAAIFVALDRSDKTYYACDAGCLDSPVQLGPYRKYFPVKLTEPLTAILYITADKQHMEDLRHAIHVKEVVEAPPHENHVIALHKHGHSLGGLNPLFWISIIVLIVVFHLFLCRIIMNEFCDSGVSYRRLYNRP

Summary

EMBL
BABH01004041    NWSH01003665    PCG65959.1    PCG65960.1    ODYU01003913    SOQ43261.1    + More
KZ150346    PZC71283.1    AGBW02007651    OWR55064.1    KQ460651    KPJ13019.1    JTDY01001082    KOB74931.1    KQ459582    KPI99061.1    ATLV01016120    KE525057    KFB40985.1    GGFM01002746    MBW23497.1    GGFM01007076    MBW27827.1    GGFJ01003278    MBW52419.1    AXCM01000351    APCN01001654    AAAB01008980    EAA14338.2    GGFK01005719    MBW39040.1    GGFK01005734    MBW39055.1    JXUM01046121    GAPW01000516    KQ561463    JAC13082.1    KXJ78495.1    CH477240    EAT46446.1    AXCN02001960    JXUM01103550    KQ564814    KXJ71715.1    GAPW01000558    JAC13040.1    GFDL01002477    JAV32568.1    ADMH02001096    ETN64123.1    GFDL01002479    JAV32566.1    AJVK01034136    GANO01002738    JAB57133.1    CVRI01000044    CRK96500.1    NEVH01021922    PNF19450.1    GDAI01002342    JAI15261.1    GFDF01011096    JAV02988.1    KK853326    KDR08464.1    OUUW01000004    SPP79325.1    CH902620    EDV31352.1    CH479180    EDW29366.1    CH379060    EAL34010.1    GBXI01008679    GBXI01001809    JAD05613.1    JAD12483.1    CM000157    EDW87307.1    CM002910    KMY87556.1    UFQS01000186    UFQT01000186    SSX00906.1    SSX21286.1    GDHF01028668    JAI23646.1    CH963920    EDW78086.1    CH480829    EDW45570.1    CH954177    EDV57397.1    AE014134    AY061146    AAF51321.2    AAL28694.1    GAMC01002918    JAC03638.1    JRES01000905    KNC27372.1    GDRN01104967    JAI57815.1    CH940649    EDW64376.1    CH933807    EDW11692.1    CH916379    EDV94207.1    KK107144    QOIP01000003    EZA57593.1    RLU24536.1    NNAY01000413    OXU28585.1    GDHF01019745    JAI32569.1    AAZX01000612    JXJN01003724    KQ981856    KYN34639.1    QCYY01001594    ROT76912.1    KQ982330    KYQ57670.1    KQ977580    KYN01755.1    CCAG010008136    GL888175    EGI66059.1    KQ980404    KYN16203.1    ADTU01005012    KQ976440    KYM86498.1    DS231934    EDS27612.1    KQ435777    KOX74860.1    GL446154    EFN88390.1    LBMM01000101    KMR04946.1    GL437497    EFN70356.1    GEDC01021417    JAS15881.1    KQ414663    KOC65382.1    SAUD01001456    RXG71540.1    DS235878    EEB19844.1    GL732565    EFX76953.1    GDIP01165681    GDIP01142644    GDIQ01036925    LRGB01000996    JAJ57721.1    JAN57812.1    KZS14283.1    GGMR01011915    MBY24534.1    GFXV01007429    MBW19234.1    GDIQ01021281    JAN73456.1    GGMS01001944    MBY71147.1   
Pfam
PF03735   ENT        + More
PF00538   Linker_histone
Interpro
IPR018795   DUF2152        + More
IPR036142   ENT_dom-like_sf       
IPR005491   ENT_dom       
IPR036388   WH-like_DNA-bd_sf       
IPR036390   WH_DNA-bd_sf       
IPR005818   Histone_H1/H5_H15       
SUPFAM
SSF158639   SSF158639        + More
SSF46785   SSF46785       
Gene 3D

Ontologies

Topology

Length:
624
Number of predicted TMHs:
2
Exp number of AAs in TMHs:
43.9005599999999
Exp number, first 60 AAs:
22.10351
Total prob of N-in:
0.99473
POSSIBLE N-term signal
sequence
inside
1  -  33
TMhelix
34  -  56
outside
57  -  585
TMhelix
586  -  608
inside
609  -  624
 
 

Population Genetic Test Statistics

Pi
328.880003
Theta
228.968726
Tajima's D
1.248161
CLR
0.01729
CSRT
0.725963701814909
Interpretation
Uncertain
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