Silkworm Genome Informatics Database

Gene

KWMTBOMO09490

Pre Gene Modal

BGIBMGA013056

Annotation

PREDICTED:_rhomboid-related_protein_2_isoform_X2_[Bombyx_mori]

Location

Bomo_Chr16(-):2413257-2431297 View in EpiBrowser

Location in the cell

Cytoplasmic Reliability : 1.244 Nuclear Reliability : 1.146

CDS

ATGCCTTCGGGACAACGTGATACAGCGGTTTCTATTCCTTTGACGCCTACACGATCGGACTTGTATTGGCGTAGGATATTTAATAAGTACGACAAAGACAACGATGGACGCATATCCTACGTCGAATTAAAGAACATAATAGAATCTCGGGAATACGACCATGATTTACCCGATAACGTGGTGGATAAGATCATGTCGTTGGCGGACAGCGATAACTCGGGATACCTCGACTTCCAAGAGTTCGTTGCGATGATGCACAATCCTGATCTGAAGGCGGTTTTCGGGCATTTCGTTGCGAGATATATCCATTCGATTATCCCTAACCGTGGCCCCGTCGATACGACAGGAACACGGACAGGCTTCCGGCCAGTTTCTACTGCGGATAGCGGTATATATTTGTTTTTTTTTTTACATTTATCATGTGCATACGTCATTCATTCATCATTCGTTTCGTCTAAAACGCGGAAGTCATGCTTATTTACCATCGAAACTATCAAAGTTGTTGTCGAATCTGTTTGTCCGTGTGTGGTTTGTTACTTCTCGTACTAG

Protein

MPSGQRDTAVSIPLTPTRSDLYWRRIFNKYDKDNDGRISYVELKNIIESREYDHDLPDNVVDKIMSLADSDNSGYLDFQEFVAMMHNPDLKAVFGHFVARYIHSIIPNRGPVDTTGTRTGFRPVSTADSGIYLFFFLHLSCAYVIHSSFVSSKTRKSCLFTIETIKVVVESVCPCVVCYFSY

Uniprot

A0A0N1IGZ0 A0A2W1BWV9 A0A194Q161 A0A232F589 K7J2U7 A0A2J7R9Z3 + More
N6U949 U4UBC0 U4U209

Pubmed

26354079 28756777 28648823 20075255 23537049

EMBL

KQ460651 KPJ13022.1 KZ149935 PZC77166.1 KQ459582 KPI99058.1 + More
NNAY01000911 OXU25961.1 NEVH01006580 PNF37657.1 APGK01044243 KB741021 ENN75102.1 KB632003 ERL87881.1 ERL87879.1

Proteomes

UP000053240 UP000053268 UP000215335 UP000002358 UP000235965 UP000019118 + More
UP000030742

Pfam

PF01694 Rhomboid + More
PF13499 EF-hand_7

Interpro

IPR018247   EF_Hand_1_Ca_BS        + More
IPR035952   Rhomboid-like_sf
IPR011992   EF-hand-dom_pair
IPR022764   Peptidase_S54_rhomboid_dom
IPR002048   EF_hand_dom
IPR017213   Peptidase_S54_rhomboid_met

SUPFAM

SSF47473 SSF47473

Gene 3D

1.20.1540.10

CDD

cd00051 EFh

ProteinModelPortal

A0A0N1IGZ0 A0A2W1BWV9 A0A194Q161 A0A232F589 K7J2U7 A0A2J7R9Z3 + More
N6U949 U4UBC0 U4U209

PDB

3WFN E-value=1.50985e-05, Score=111

KEGG

101736190 K02857 rhomboid-related protein 1/2/3 [EC:3.4.21.105] | (RefSeq) rhomboid-related protein 2

GO

GO:0004252 GO:0016021 GO:0005509 GO:0008270 GO:0016020 GO:0019752 GO:0016491 GO:0006108 GO:0030060 GO:0016615 GO:0000049 GO:0016876

Length:

182

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

20.27764

Exp number, first 60 AAs:

0.00052

Total prob of N-in:

0.32585

outside

1 - 182

Pi

199.257092

Theta

159.985016

Tajima's D

0.39986

CLR

1.274046

CSRT

0.486225688715564

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics