Silkworm Genome Informatics Database

Gene

KWMTBOMO09489

Pre Gene Modal

BGIBMGA012804

Annotation

reverse_transcriptase_[Lasius_niger]

Location

Bomo_Chr16(+):2401228-2405563 View in EpiBrowser

Location in the cell

Nuclear Reliability : 3.539

CDS

ATGAAGTTAAATCCCTTAAAAAACCCTCAACCACAACACAAACTGCTTACTCAGCAAGCACTCCTTCCAGGCTTGTTTGACAGACAACGTTCGTCATCCCTTTCCGACCTGGGAAAGTCACCACAAGATACGACCAATGTAGATCAACCAAATGTAGCCAGTATCACACCGGTAGCAACCTTGCTGGAAGACATTCCTCAACCCCCTGCTCCTCCACCATGGCAAAGGGTACCATCACCCAATAGCAGAAGCAGTAAGAAAAGAAAGTACTCCAGTTCCTCACCAGAGGCCCCAAGTACCACTGTGAAAAACCGCTTCAGCACCTTACCTCTAGACGCAACGGATGAACCATGCACTACCGATCGCCCTAAGCCCAGCAAACCTCCACCTATAGTACTCAATGGTATAGAAGATGTTACAGAGCTATCGAAGTTACTTCAAACCGTCAGTAGCAAAGACGATTTCAAATTTAAACTAATTAATAAAAACCTACTTCACATTCTGGTTAACAATGCTGAGGAGTATAAAAAAATCATAGCGGTAATAAGAGCAAATGGACTCATAGGACACACATTCACCCCTAAAGATATCAAATGCTATCGCATTGTCATAAAAGACCTCCACCACAGCACACCCCATGAAGCGATAACTGAAGCCATTGAGGCAACTAACAATAAAATTAAAGGCGAAATCATCAATGCACGTTACGGACCCGACAAGAAACCTACATCTACATTCTTTGTAAACATTGAGCCCAGCGTAAATAACCCGGCAGCCAAGAATATAACCCATATATTTAACCAAAAGGTCAAGATAGAGGATCCTCGCAAGTCAAAAAGCTTTGTTCAATGTCAACGTTGCCAGCGCTACGGCCACTCAAAAAATAACTGCATGAGACCATATAGGTGCGTTAAATGCGGTGAGGGTCACAAAACCTCAGAGTGCCAAAAGAAAGATAGAACCACACCGGCTAAATGCGCTCTCTGCTTGTGTGACCACCCGGCTAACTACAAAGGCTGCGAAATTTACAAGGAAATCCTTGCCCGAAGAAACAAAAACTTAACTCCAAGAGAAAGGCAATCCGCTCTATCTATCACAGCCTTGCCTATTAATCCAATCAGCTCCACATCGACAAAAACTGAAGGTATCGAAAGACCAACTCAACAACGAACTTATGCTGAAGTCGCCGATGGGAGGAATTCCCAATCTAATCAACAATCCTACAGCAAACTGGAAAATATCCTACTTAAACAAACTTCTAAAATGACCTCGCTGCATATTGCCACTTGGAACATCAACGGCCTAGCCCCTAATAAAAACGAACTAGTGACGTTCATCAAATCTAATAAGCTTGATGTTTGTCTTGTCTCTGAATCGCACACCACACCAAGAAGCAGAATATGTGTTCCAGGCTTTTCGGTGTACATCACCTGTCATCCTGATGGAGGGGCCCACGCTGGCACCGCGATAATTATCAAGAACAGTATAAAGCATTACCTCCTGGAATCTATTGCGGCTCCCTATCTCCAAGCCACAACTGTAAGGGTGGAGGATCGTTCCGGACCCCTAATTCTTTCTGCAATATACTGTCCACCGCGCCACGCAATAAAGGAGAAAATGTTTACTGAGTTTTTTATGTCTTTAGGCAACCGATTCATTGCTGGTGGCGATTGGAATGCCAAGCATACATACTGGGGCTCAAGATTAACAGTAACTAGAGGTCGGGAATTAAAAAAGAGCATTGAAAATAATCACTTGTTAGCTATGACAACTGGAGAGCCGACATATTGGCCTACGGACAGTAACAAAATACCTGACCTCCTGGATTTCTTTGTTACTAAGGGTATTAGCGCACAAAATACTCTGATAAAGGCAAGTCTCGACGGCAGCTCTGACCATTCACCTGTCTTGCTTACACTTAGCTCAATGGCCATGCCCAGCGATACCCATACCGTCTATCTCCACAATTATAAAACTGATTGGCAATGTTTTCGGGAATTCCTCGAATCAAACATAAACCTATGTATCCCACTAAAAACCAAAGCTGACGTTGACGACGCATGCCTCTATATTACAAACCTTATTCAAGTGGCGGCTTGGTCTAGTACACCTGAACTGAAGGGTCCTTCGAGAGAGGCGCCGGTCCCTCTTGTTGTCAAGGAAAAAATCGCCGCCAAACGTCGCCTTCGCAAAATTTGGCAGACAACCCACCGATGTGCGGATAAAACCAGACTAAATCGAGCTATTAAAGAACTCAAAGATCTTCTGGATTACGCTTCAAACGATTCACTCAAGCAGAGATTGGAAAAAATGTCTCCAAATGCAAATGGCTCTCACAACCTCTGGAAGGCAACAAAGTACCTCCCACAGCCGCAACGGTGCTCTCCGCCTTTAAGATCCGGTAATAAATGGGCGCGAACTGACCAGGAAAAATCTCAGGCCTTCGCTATATACCTGGCTGAAGTATTTAAACCCAACAATACGGATAGTCCAGAGGATCCCGAAATAAATCGAGTATTAAAGCAAGACTTGCAATTATGCCTACCCCTGAGTCCTACTACACCAAAAGAGATTGCTAGAGAAATAGTCAAAATGGACCGTAATAAAGCGCCTGGATTTGACTTGGTTACCCCCAGACTGTTGAAAGAGCTCCCTAGGAGGTGCATTCTCTTTTTGACCATTCTTGTCAATGCTACATTGAGAATATCGCATTTCCCTGCACTCTGGAAAACATCCCAAATTGTGATGATCCAAAAACCTGGTAAACCGCCTAACGAGTTGTCTTCTTATCGCCCTATAAGCCTGACACCGGTTTTGTCAAAGTTATGGGAAAGGATCATCTTGGCACGATTATCTCCTTGCCTAGATACATGCCATGTAATACCTGACCACCAATTTGGCTTCCGAAAGCACCACTCAACCATAGAACAGGTACACAGAGTGTATTGCACAATAAGACATTGTCTGGAGAGGAAAGAGTACTGCTCGGCTGCTTTTCTCGACGTGCAACAAGCTTTTGATCGGGTTTGGCATAAAGGACTGCTCTGCAAAATTAAAAAGTACCTTCCACATTCCTACTTTCTGCTATTAGAGTCTTATCTCAGTGACAGAAAGTTTCAAGTCAAGCTCCGTGATGCCAGATCTTCTCTTTTTGCCTGCAGAGCCGGAGTGCCTCAAGGCTCCGTACTTGGTCCGGTCCTCTACAACATTTTTACTTGTGATCTACCCCAGTCACCAGAAATAGCGATAGCAACCTTTGCCGATGATGCAGCCTTCCTCAGTTGTAGCAGTGATCCCAATGAAGCGACCAGACTGTTGCAAACCCAGCTCGATATCACTAACACTTGGATGACCAAGTGGCGCATAAAAGCAAGCGCCCCCAAGTCTCACCACATCACATTTACCCTAAGACGTGAAACTTGTCCTCCAGTCAAACTCGGCCCCGATACATTGCCGCAATCAACCTGTGTTAAGTATCTTGGATTTCACTTGGACCGAAGGATGACATGGAAAGACCACATAAAAACAAAACGTAATGAAATTAACATTAGATTTAAAAACCTACTCTGGCTTCTCGGTAGACAGGCTGCCTTATCCCTATCCAACAAGTTAAGGGTGTATTGCTCAATAATAAAACCGATTTGGACGTATGGAATCCAACTGTGGTCGACAGCAAGCAAATCCAACATTATGTGCCTCCAGAGAGCTCAAAACAGTATCCTGAGGGTACTTTCGTCGGCGCCTTGGTATACTCGAAATTCGGAAATCCACGAGTACCTGGAAATCCCAACCATCTTGGATGAAGTTAAACGATACTTAGCCAACTATAAGAACCGCTTGAAAGCTCACCCAAACCCGTTGTCCGGCTTACTATTGCAGCCAAATCCAATTAAAAGACTCAAGAGAGCCGACGTGCTACCCTACTAA

Protein

MKLNPLKNPQPQHKLLTQQALLPGLFDRQRSSSLSDLGKSPQDTTNVDQPNVASITPVATLLEDIPQPPAPPPWQRVPSPNSRSSKKRKYSSSSPEAPSTTVKNRFSTLPLDATDEPCTTDRPKPSKPPPIVLNGIEDVTELSKLLQTVSSKDDFKFKLINKNLLHILVNNAEEYKKIIAVIRANGLIGHTFTPKDIKCYRIVIKDLHHSTPHEAITEAIEATNNKIKGEIINARYGPDKKPTSTFFVNIEPSVNNPAAKNITHIFNQKVKIEDPRKSKSFVQCQRCQRYGHSKNNCMRPYRCVKCGEGHKTSECQKKDRTTPAKCALCLCDHPANYKGCEIYKEILARRNKNLTPRERQSALSITALPINPISSTSTKTEGIERPTQQRTYAEVADGRNSQSNQQSYSKLENILLKQTSKMTSLHIATWNINGLAPNKNELVTFIKSNKLDVCLVSESHTTPRSRICVPGFSVYITCHPDGGAHAGTAIIIKNSIKHYLLESIAAPYLQATTVRVEDRSGPLILSAIYCPPRHAIKEKMFTEFFMSLGNRFIAGGDWNAKHTYWGSRLTVTRGRELKKSIENNHLLAMTTGEPTYWPTDSNKIPDLLDFFVTKGISAQNTLIKASLDGSSDHSPVLLTLSSMAMPSDTHTVYLHNYKTDWQCFREFLESNINLCIPLKTKADVDDACLYITNLIQVAAWSSTPELKGPSREAPVPLVVKEKIAAKRRLRKIWQTTHRCADKTRLNRAIKELKDLLDYASNDSLKQRLEKMSPNANGSHNLWKATKYLPQPQRCSPPLRSGNKWARTDQEKSQAFAIYLAEVFKPNNTDSPEDPEINRVLKQDLQLCLPLSPTTPKEIAREIVKMDRNKAPGFDLVTPRLLKELPRRCILFLTILVNATLRISHFPALWKTSQIVMIQKPGKPPNELSSYRPISLTPVLSKLWERIILARLSPCLDTCHVIPDHQFGFRKHHSTIEQVHRVYCTIRHCLERKEYCSAAFLDVQQAFDRVWHKGLLCKIKKYLPHSYFLLLESYLSDRKFQVKLRDARSSLFACRAGVPQGSVLGPVLYNIFTCDLPQSPEIAIATFADDAAFLSCSSDPNEATRLLQTQLDITNTWMTKWRIKASAPKSHHITFTLRRETCPPVKLGPDTLPQSTCVKYLGFHLDRRMTWKDHIKTKRNEINIRFKNLLWLLGRQAALSLSNKLRVYCSIIKPIWTYGIQLWSTASKSNIMCLQRAQNSILRVLSSAPWYTRNSEIHEYLEIPTILDEVKRYLANYKNRLKAHPNPLSGLLLQPNPIKRLKRADVLPY

Uniprot

J9LYS0 J9KWJ0 J9KE07 J9LBF1 A0A0J7K3N0

EMBL

ABLF02041861 ABLF02021819 ABLF02021820 ABLF02055326 ABLF02024784 ABLF02024792 + More
ABLF02012739 ABLF02012741 LBMM01015125 KMQ84919.1

Proteomes

UP000007819 UP000036403

Pfam

PF00078   RVT_1        + More
PF07530   PRE_C2HC
PF14529   Exo_endo_phos_2
PF04937   DUF659
PF03372   Exo_endo_phos

Interpro

IPR005135   Endo/exonuclease/phosphatase        + More
IPR006579   Pre_C2HC_dom
IPR036691   Endo/exonu/phosph_ase_sf
IPR000477   RT_dom
IPR037220   BED_dom
IPR012337   RNaseH-like_sf
IPR007021   DUF659

SUPFAM

SSF56219   SSF56219        + More
SSF140996   SSF140996
SSF53098   SSF53098

Gene 3D

3.60.10.10

ProteinModelPortal

J9LYS0 J9KWJ0 J9KE07 J9LBF1 A0A0J7K3N0

PDB

6AR3 E-value=0.00264107, Score=101

KEGG

105842291 no KO assigned | (RefSeq) uncharacterized LOC105842291

GO

GO:0003964 GO:0003676 GO:0008270 GO:0016020 GO:0019752 GO:0016491 GO:0006108 GO:0030060 GO:0016615 GO:0000049 GO:0016876

Length:

1308

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.02171

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00002

outside

1 - 1308

Pi

278.726796

Theta

200.532528

Tajima's D

2.891239

CLR

0.366559

CSRT

0.975201239938003

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics

Multiple alignment of Orthologues

Gene Tree